X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2Fgenetreepreprocessing.wiki;h=25348f9535efca4f298422d8e1172b9f06a3df39;hb=8298cc0323b6f4d4a905f31512f0b3adcc76f925;hp=b07f23bb0d6c03a34b6a6a01ce3c55d988b98ec0;hpb=e4309640c118a2bc57d11cf415cd00514608f668;p=jalview.git

diff --git a/wiki/genetreepreprocessing.wiki b/wiki/genetreepreprocessing.wiki
index b07f23b..25348f9 100644
--- a/wiki/genetreepreprocessing.wiki
+++ b/wiki/genetreepreprocessing.wiki
@@ -1,3 +1,5 @@
+#summary preprocessing of gene trees for speciation/duplication inference
+
 = Gene tree preprocessing =
 
 == Purpose ==
@@ -14,8 +16,9 @@ path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree i
 
 == Details ==
 
-Output is two files:
+Output consists of three files:
   * input-name_preprocessed_gene_tree.phylo.xml
+  * input-name_species_present.txt
   * input-name_removed_nodes.txt