X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2Fgenetreepreprocessing.wiki;h=25348f9535efca4f298422d8e1172b9f06a3df39;hb=c8ff39a044c9609163a9ec2f19aaf84fd79adb57;hp=5c0d07d52f8ae696ff857482af74525c20a4ea28;hpb=13002e98f00d3bf07d5d3c7a0645fd8344ad9d4d;p=jalview.git

diff --git a/wiki/genetreepreprocessing.wiki b/wiki/genetreepreprocessing.wiki
index 5c0d07d..25348f9 100644
--- a/wiki/genetreepreprocessing.wiki
+++ b/wiki/genetreepreprocessing.wiki
@@ -1,4 +1,6 @@
-= Gene tree Preprocessing =
+#summary preprocessing of gene trees for speciation/duplication inference
+
+= Gene tree preprocessing =
 
 == Purpose ==
 
@@ -14,8 +16,9 @@ path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree i
 
 == Details ==
 
-Output is two files:
+Output consists of three files:
   * input-name_preprocessed_gene_tree.phylo.xml
+  * input-name_species_present.txt
   * input-name_removed_nodes.txt