Add missing doc files
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 5 Sep 2013 11:03:18 +0000 (12:03 +0100)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 5 Sep 2013 11:03:18 +0000 (12:03 +0100)
commit6ccf6e7acc4d35484ae6ad0f03d22c19b8ce63fc
treea987c8f7b48b25818b283fd7045ed4c8836195e3
parentf96c106fc2e76aff65de8adebdd31069fe3a1a05
Add missing doc files
373 files changed:
binaries/src/ViennaRNA/doc/doxygen.conf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/html/sync_off.png [new file with mode: 0644]
binaries/src/ViennaRNA/doc/html/sync_on.png [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/1_88_84__epars_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/1_88_84__epars_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/1_88_84__intloops_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/1_88_84__intloops_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dfold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dfold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dfold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dpfold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dpfold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dpfold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/2Dpfold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/LPfold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/LPfold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/LPfold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/Lfold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/Lfold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/MEA_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/MEA_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/MEA_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/MEA_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/Makefile [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/PKplex_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/PS__dot_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/PS__dot_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/PS__dot_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/PS__dot_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/ProfileAln_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/RNAstruct_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/RNAstruct_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/alifold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/alifold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/alifold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/alifold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/aln__util_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/annotated.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/citelist.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/cofold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/cofold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/cofold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/convert__epars_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/convert__epars_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/data__structures_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/deprecated.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_97aefd0d527b934f1d99a682da8fe6a9.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_97aefd0d527b934f1d99a682da8fe6a9_dep.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_97aefd0d527b934f1d99a682da8fe6a9_dep.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_d72344b28b4f2089ce25682c4e6eba22.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_d72344b28b4f2089ce25682c4e6eba22_dep.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dir_d72344b28b4f2089ce25682c4e6eba22_dep.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dist__vars_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dist__vars_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dist__vars_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/dist__vars_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/doxygen.sty [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/duplex_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/duplex_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/duplex_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/duplex_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/edit__cost_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/edit__cost_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/energy__par_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/files.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/findpath_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/findpath_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/findpath_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/findpath_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/gquad_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/gquad_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/gquad_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/gquad_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__centroid__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__centroid__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__centroid__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__centroid__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__class__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__class__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__class__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__class__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__cofold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__cofold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__cofold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__cofold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__mfe__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__mfe__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__mfe__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__mfe__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__pf__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__pf__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__pf__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__pf__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__stochbt.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__stochbt.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__stochbt.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__consensus__stochbt.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__dos.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__dos.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__dos.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__dos.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__convert.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__convert.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__convert.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__convert.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__rw.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__rw.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__rw.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__energy__parameters__rw.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__eval.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__eval.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__eval.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__eval.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__folding__routines.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__folding__routines.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__folding__routines.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__inverse__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__inverse__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__inverse__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__inverse__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__mfe.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__mfe.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__mfe.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__mfe.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__pf.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__pf.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__pf.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__pf.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__stochbt.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__stochbt.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__stochbt.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__kl__neighborhood__stochbt.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__consensus__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__consensus__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__consensus__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__consensus__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__pf__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__pf__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__pf__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__local__pf__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mea__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mea__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mea__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mea__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__cofold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__cofold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__cofold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__cofold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__mfe__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__parse.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__parse.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__cofold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__cofold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__cofold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__cofold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__pf__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__fold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__fold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__fold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__fold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__stochbt.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__stochbt.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__stochbt.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__stochbt.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__wuchty.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__wuchty.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__wuchty.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__wuchty.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__zuker.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__zuker.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__zuker.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__subopt__zuker.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__up__cofold.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__up__cofold.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__up__cofold.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/group__up__cofold.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/index.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl11_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl11dH_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl21_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl21dH_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl22_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/intl22dH_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/inverse_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/inverse_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/list_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/loop__energies_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/loop__energies_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/loop__energies_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/loop__energies_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mainpage_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mm_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mm_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/modules.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/move__set_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mp_example.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mp_parse.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/mp_utils.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/naview_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/naview_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/naview_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/naview_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/pair__mat_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/params_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__co_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__co_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__co_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__co_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__up_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__up_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__up_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plex_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/plot__layouts_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/profiledist_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/profiledist_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/profiledist_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/profiledist_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/read__epars_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/read__epars_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.aux [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.bbl [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.blg [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.brf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.idx [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.ilg [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.ind [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.log [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.out [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/refman.toc [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/ribo_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/snofold_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/snoop_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/stringdist_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/stringdist_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/stringdist_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/stringdist_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structCOORDINATE.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structConcEnt.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structINTERVAL.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLIST.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLIST__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLIST__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLST__BUCKET.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLST__BUCKET__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structLST__BUCKET__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structPAIR.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structPostorder__list.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structSOLUTION.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTree.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTree__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTree__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDfold__solution.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDfold__vars.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDfold__vars__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDfold__vars__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDpfold__solution.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDpfold__vars.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDpfold__vars__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structTwoDpfold__vars__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structbondT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structbondTEn.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structcofoldF.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structconstrain.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structcpair.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structdupVar.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structduplexT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structfolden.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structinteract.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structintermediate__t.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structintermediate__t__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structintermediate__t__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structmodel__detailsT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structmove__t.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpair__info.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpairpro.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpairpro__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpairpro__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structparamT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structparamT__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structparamT__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpath__t.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpf__paramT__coll__graph.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpf__paramT__coll__graph.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structplist.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpu__contrib.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structpu__out.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structsect.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structsnoopT.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structstruct__en.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structsvm__model.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/structswString.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/subopt_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/subopt_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/subopt_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/subopt_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/svm__utils_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/treedist_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/treedist_8h__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/treedist_8h__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/treedist_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/utils_8h.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/utils_8h__dep__incl.md5 [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/utils_8h__dep__incl.pdf [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/utils_8h_source.tex [new file with mode: 0644]
binaries/src/ViennaRNA/doc/latex/viennarna.bib [new file with mode: 0644]