PROT-1 Remove old files
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Fri, 15 Nov 2013 11:34:56 +0000 (11:34 +0000)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Fri, 15 Nov 2013 11:34:56 +0000 (11:34 +0000)
commit6e17b2757626e22443cacb6f0c8207806328129c
tree0a8713d80548261ac609d3eb88bde5196ce50bed
parent008be2cc63154bacbe1cbf5fa03ffbe49fdc09da
PROT-1 Remove old files
112 files changed:
META-INF/MANIFEST.MF [deleted file]
WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar [deleted file]
WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar [deleted file]
WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar [deleted file]
WEB-INF/lib/displaytag-1.2.jar [deleted file]
WEB-INF/lib/guava-15.0.jar [deleted file]
WEB-INF/lib/jabaws-core-2.1.0.jar [deleted file]
WEB-INF/lib/jabaws-core-src-2.1.0.jar [deleted file]
WEB-INF/lib/jackson-core-asl-1.9.13.jar [deleted file]
WEB-INF/lib/jackson-mapper-asl-1.9.13.jar [deleted file]
WEB-INF/lib/jstl-1.2.jar [deleted file]
WEB-INF/lib/log4j-1.2.16.jar [deleted file]
WEB-INF/lib/lz4-1.2.0.jar [deleted file]
WEB-INF/lib/metrics-core-3.0.1.jar [deleted file]
WEB-INF/lib/netty-3.6.6.Final.jar [deleted file]
WEB-INF/lib/slf4j-api-1.7.5.jar [deleted file]
WEB-INF/lib/slf4j-simple-1.7.5.jar [deleted file]
WEB-INF/lib/snappy-java-1.1.0.jar [deleted file]
WEB-INF/web.xml [deleted file]
build.xml [deleted file]
conf/Engine.properties [deleted file]
conf/GA.properties [deleted file]
conf/Proteocache.properties [deleted file]
datadb/compbio/cassandra/CassandraNativeConnector.java [deleted file]
datadb/compbio/cassandra/CassandraNewTableWriter.java [deleted file]
datadb/compbio/cassandra/CassandraReader.java [deleted file]
datadb/compbio/cassandra/CassandraWriter.java [deleted file]
datadb/compbio/cassandra/DataBase.java [deleted file]
datadb/compbio/cassandra/FastaReader.java [deleted file]
datadb/compbio/cassandra/FastaSequence.java [deleted file]
datadb/compbio/cassandra/JpredParser.java [deleted file]
datadb/compbio/cassandra/JpredParserHTTP.java [deleted file]
datadb/compbio/cassandra/JpredParserLocalFile.java [deleted file]
datadb/compbio/cassandra/Pair.java [deleted file]
datadb/compbio/cassandra/StructureJobLog.java [deleted file]
datadb/compbio/cassandra/StructureProteinPrediction.java [deleted file]
datadb/compbio/cassandra/readers/CassandraReaderExecutionTime.java [deleted file]
doc/packages.odt [deleted file]
engine/compbio/engine/Job.java [deleted file]
engine/compbio/engine/JpredJob.java [deleted file]
engine/compbio/engine/ProteoCachePropertyHelperManager.java [deleted file]
engine/compbio/engine/archive/Archive.java [deleted file]
engine/compbio/engine/archive/ArchiveManager.java [deleted file]
engine/compbio/engine/archive/ArchivedJob.java [deleted file]
log/log4j.properties [deleted file]
server/compbio/listeners/ContextListener.java [deleted file]
server/compbio/listeners/DetailList.java [deleted file]
server/compbio/listeners/ServletJobsByDate.java [deleted file]
server/compbio/listeners/ServletLogInfo.java [deleted file]
server/compbio/listeners/ServletSequenceProtein.java [deleted file]
server/compbio/listeners/ServletTimeExecution.java [deleted file]
server/compbio/statistic/CassandraRequester.java [deleted file]
server/compbio/statistic/StatisticsProt.java [deleted file]
testsrc/lib/testng-5.10-jdk15.jar [deleted file]
testsrc/testdata/1000x3000Dna.fasta [deleted file]
testsrc/testdata/200x500Protein.dnd [deleted file]
testsrc/testdata/200x500Protein.fasta [deleted file]
testsrc/testdata/3dnaseqs.fasta [deleted file]
testsrc/testdata/50000x300Dna.fasta [deleted file]
testsrc/testdata/50x500Protein.dnd [deleted file]
testsrc/testdata/50x500Protein.fasta [deleted file]
testsrc/testdata/ClustalLimits.xml [deleted file]
testsrc/testdata/ClustalParameters.xml [deleted file]
testsrc/testdata/ClustalPresets.xml [deleted file]
testsrc/testdata/ClustaloParameters.xml [deleted file]
testsrc/testdata/InvalidMafftParameters.xml [deleted file]
testsrc/testdata/Jpred.test1.fasta [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.align [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.blast.gz [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.hmm [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.jnet [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.profile [deleted file]
testsrc/testdata/Jpred.test1.fasta.res.pssm [deleted file]
testsrc/testdata/MafftLimits.xml [deleted file]
testsrc/testdata/MafftParameters.xml [deleted file]
testsrc/testdata/MafftPresets.xml [deleted file]
testsrc/testdata/MuscleLimits.xml [deleted file]
testsrc/testdata/MuscleParameters.xml [deleted file]
testsrc/testdata/MusclePresets.xml [deleted file]
testsrc/testdata/ProbconsLimits.xml [deleted file]
testsrc/testdata/ProbconsParameters.xml [deleted file]
testsrc/testdata/RNAalifoldParameters.xml [deleted file]
testsrc/testdata/RunnerConfigSchema.xsd [deleted file]
testsrc/testdata/SmallProtein.fasta [deleted file]
testsrc/testdata/TO1381.aln [deleted file]
testsrc/testdata/TO1381.dnd [deleted file]
testsrc/testdata/TO1381.fasta [deleted file]
testsrc/testdata/TO1381.fasta.aln [deleted file]
testsrc/testdata/TO1381L.aln [deleted file]
testsrc/testdata/TO1381s.aln [deleted file]
testsrc/testdata/TcoffeeLimits.xml [deleted file]
testsrc/testdata/TcoffeePresets.xml [deleted file]
testsrc/testdata/aacon_results.txt [deleted file]
testsrc/testdata/aaconprm.txt [deleted file]
testsrc/testdata/complicated.fasta [deleted file]
testsrc/testdata/percentProgress.txt [deleted file]
testsrc/testdata/test_input.aln [deleted file]
testsrc/testdata/test_input.fasta [deleted file]
testsrc/testdata/testlimit.fasta [deleted file]
testsrc/testdata/unfolded_RF00031.aln [deleted file]
website/AllReports.jsp [deleted file]
website/Index.jsp [deleted file]
website/PrintResult.jsp [deleted file]
website/QueryJobsByDate.jsp [deleted file]
website/QueryLogInfo.jsp [deleted file]
website/QuerySequenceProtein.jsp [deleted file]
website/QueryTimeExecition.jsp [deleted file]
website/ReportJobsByDate.jsp [deleted file]
website/ReportLogInfo.jsp [deleted file]
website/ReportSequenceProtein.jsp [deleted file]
website/ReportTimeExecution.jsp [deleted file]
website/StatisticsProtein.jsp [deleted file]