remove mafft extensions - we do not support them
authorpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Tue, 21 Jun 2011 10:27:17 +0000 (10:27 +0000)
committerpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Tue, 21 Jun 2011 10:27:17 +0000 (10:27 +0000)
commit70b2b6ad7d60388a11adc9b8a1f59ddc0fc03a31
tree4b57d9570b235052dc9b3f5756be3bf20e255776
parent063b30bb5e8161134ae764742636ab538e10eea7
remove mafft extensions - we do not support them

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4287 e3abac25-378b-4346-85de-24260fe3988d
49 files changed:
binaries/src/mafft/extensions/Makefile [deleted file]
binaries/src/mafft/extensions/mxscarna_src/AlifoldMEA.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/AlifoldMEA.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/BPPMatrix.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Beta.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/GlobalParameters.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Globaldp.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Globaldp.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Main.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Makefile [deleted file]
binaries/src/mafft/extensions/mxscarna_src/McCaskill.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/McCaskill.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/README [deleted file]
binaries/src/mafft/extensions/mxscarna_src/ScoreType.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/StemCandidate.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/Util.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/config.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/nrutil.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/params-weird [deleted file]
binaries/src/mafft/extensions/mxscarna_src/postProcessings.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/CompareToRef.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/Defaults.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/Defaults.h_backup [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/EMtrainingALL.txt [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/EvolutionaryTree.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/FileBuffer.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/FixRef.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/Main.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/MakeGnuPlot.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/Makefile [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/MultiSequence.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/ProbabilisticModel.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/ProjectPairwise.cc [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/README [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/SafeVector.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/ScoreType.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/Sequence.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/SparseMatrix.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/mlparams0 [deleted file]
binaries/src/mafft/extensions/mxscarna_src/probconsRNA/train-script [deleted file]
binaries/src/mafft/extensions/mxscarna_src/scarna.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/seq2scs.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/COPYING [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/energy_const.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/energy_par.h [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/energy_param.cpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/energy_param.hpp [deleted file]
binaries/src/mafft/extensions/mxscarna_src/vienna/params.h [deleted file]
binaries/src/mafft/extensions/univscript.tmpl [deleted file]