source.jalview.org Git - jabaws.git/commit

git://source.jalview.org / jabaws.git / commit

author	Fábio Madeira <fmmarquesmadeira@dundee.ac.uk>
	Mon, 10 Apr 2017 09:47:50 +0000 (10:47 +0100)
committer	Fábio Madeira <fmmarquesmadeira@dundee.ac.uk>
	Tue, 11 Apr 2017 11:22:48 +0000 (12:22 +0100)
commit	7c6018cf87e67d7ac21f5230284ef2162a19320f
tree	2c9c5cdb50f66d374ed058bc7ece3ec6886d2501	tree \| snapshot
parent	1eab6cadc31107fabe7ef060de1ae91eeb4a025b	commit \| diff

JWS-112 Bumping version of ClustalW (src, binaries and windows) to version 2.1.

143 files changed:

binaries/src/clustalw/COPYING	[new file with mode: 0644]	blob
binaries/src/clustalw/COPYING.LESSER	[new file with mode: 0644]	blob
binaries/src/clustalw/Makefile		diff \| blob \| history
binaries/src/clustalw/Makefile.in		diff \| blob \| history
binaries/src/clustalw/aclocal.m4		diff \| blob \| history
binaries/src/clustalw/clustalw_help		diff \| blob \| history
binaries/src/clustalw/config.guess		diff \| blob \| history
binaries/src/clustalw/config.log	[new file with mode: 0644]	blob
binaries/src/clustalw/config.status		diff \| blob \| history
binaries/src/clustalw/config.sub		diff \| blob \| history
binaries/src/clustalw/configure		diff \| blob \| history
binaries/src/clustalw/configure.ac		diff \| blob \| history
binaries/src/clustalw/depcomp		diff \| blob \| history
binaries/src/clustalw/install-sh		diff \| blob \| history
binaries/src/clustalw/m4/Makefile		diff \| blob \| history
binaries/src/clustalw/m4/Makefile.in		diff \| blob \| history
binaries/src/clustalw/missing		diff \| blob \| history
binaries/src/clustalw/src/.deps/Alignment.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/AlignmentOutput.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/AlignmentSteps.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Clustal.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ClustalFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ClustalWResources.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ClusterTree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ClusterTreeOutput.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/CommandLineParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/DebugLog.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/EMBLFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/FastPairwiseAlign.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/FileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/FileReader.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/FullPairwiseAlign.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/GDEFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Help.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/InFileStream.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/InteractiveMenu.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/InvalidCombination.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Iteration.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/LowScoreSegProfile.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/MSA.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/MSFFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/MyersMillerProfileAlign.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/NJTree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Node.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ObjectiveScore.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/OutputFile.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/PIRFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/PearsonFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ProfileBase.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ProfileStandard.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/ProfileWithSub.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/RSFFileParser.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/RandomGenerator.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/RootedClusterTree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/RootedGuideTree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/RootedTreeOutput.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Sequence.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Stats.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/SubMatrix.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/SymMatrix.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Tree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/TreeInterface.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/UPGMAAlgorithm.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/UnRootedClusterTree.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/UserParameters.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/Utility.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/VectorOutOfRange.Po		diff \| blob \| history
binaries/src/clustalw/src/.deps/main.Po		diff \| blob \| history
binaries/src/clustalw/src/Alignment.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/AlignmentOutput.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/AlignmentSteps.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Clustal.cpp		diff \| blob \| history
binaries/src/clustalw/src/Clustal.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ClustalFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ClustalWResources.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ClusterTree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ClusterTreeOutput.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/CommandLineParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/DebugLog.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/EMBLFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/FastPairwiseAlign.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/FileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/FileReader.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/FullPairwiseAlign.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/GDEFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Help.cpp		diff \| blob \| history
binaries/src/clustalw/src/Help.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/InFileStream.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/InteractiveMenu.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/InvalidCombination.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Iteration.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/LowScoreSegProfile.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/MSA.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/MSFFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Makefile		diff \| blob \| history
binaries/src/clustalw/src/Makefile.in		diff \| blob \| history
binaries/src/clustalw/src/MyersMillerProfileAlign.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/NJTree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Node.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ObjectiveScore.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/OutputFile.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/PIRFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/PearsonFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ProfileBase.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ProfileStandard.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/ProfileWithSub.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/RSFFileParser.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/RandomGenerator.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/RootedClusterTree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/RootedGuideTree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/RootedTreeOutput.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Sequence.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Stats.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/SubMatrix.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/SymMatrix.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Tree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/TreeInterface.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/UPGMAAlgorithm.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/UnRootedClusterTree.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/UserParameters.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/Utility.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/VectorOutOfRange.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/alignment/Alignment.cpp		diff \| blob \| history
binaries/src/clustalw/src/alignment/AlignmentOutput.cpp		diff \| blob \| history
binaries/src/clustalw/src/clustalw2		diff \| blob \| history
binaries/src/clustalw/src/clustalw_version.h		diff \| blob \| history
binaries/src/clustalw/src/config.h		diff \| blob \| history
binaries/src/clustalw/src/config.h.in		diff \| blob \| history
binaries/src/clustalw/src/fileInput/ClustalFileParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/fileInput/EMBLFileParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/fileInput/FileReader.cpp		diff \| blob \| history
binaries/src/clustalw/src/fileInput/GDEFileParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/fileInput/MSFFileParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/fileInput/RSFFileParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/general/UserParameters.cpp		diff \| blob \| history
binaries/src/clustalw/src/general/UserParameters.h		diff \| blob \| history
binaries/src/clustalw/src/general/Utility.cpp		diff \| blob \| history
binaries/src/clustalw/src/general/Utility.h		diff \| blob \| history
binaries/src/clustalw/src/interface/CommandLineParser.cpp		diff \| blob \| history
binaries/src/clustalw/src/main.o	[new file with mode: 0644]	blob
binaries/src/clustalw/src/tree/ClusterTree.cpp		diff \| blob \| history
binaries/src/clustalw/src/tree/Tree.cpp		diff \| blob \| history
binaries/windows/clustalw2.exe	[changed mode: 0644->0755]	blob \| history

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