source.jalview.org Git - jabaws.git/commit

git://source.jalview.org / jabaws.git / commit

author	Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
	Fri, 20 Sep 2013 14:32:07 +0000 (15:32 +0100)
committer	Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
	Fri, 20 Sep 2013 14:32:07 +0000 (15:32 +0100)
commit	b2a2fdc2bd95a64b3908d8ea2f31270b6c7199d3
tree	f3c87b72e69d403804618a6096e29328670d644c	tree \| snapshot
parent	c6a3bc57b6b96407d7b203e319e947e9d9aed31c	commit \| diff

Refactoring: rename duplicated Util classes

60 files changed:

engine/compbio/engine/ClusterJobId.java		diff \| blob \| history
engine/compbio/engine/Configurator.java		diff \| blob \| history
engine/compbio/engine/Job.java		diff \| blob \| history
engine/compbio/engine/SubmissionManager.java		diff \| blob \| history
engine/compbio/engine/client/ConfExecutable.java		diff \| blob \| history
engine/compbio/engine/client/EngineUtil.java	[moved from engine/compbio/engine/client/Util.java with 94% similarity]	diff \| blob \| history
engine/compbio/engine/client/EnvVariableProcessor.java		diff \| blob \| history
engine/compbio/engine/client/SkeletalExecutable.java		diff \| blob \| history
engine/compbio/engine/cluster/drmaa/AsyncJobRunner.java		diff \| blob \| history
engine/compbio/engine/cluster/drmaa/ClusterEngineUtil.java	[moved from engine/compbio/engine/cluster/drmaa/ClusterUtil.java with 76% similarity]	diff \| blob \| history
engine/compbio/engine/cluster/drmaa/ClusterSession.java		diff \| blob \| history
engine/compbio/engine/cluster/drmaa/JobRunner.java		diff \| blob \| history
engine/compbio/engine/conf/DirectoryManager.java		diff \| blob \| history
engine/compbio/engine/local/AsyncLocalRunner.java		diff \| blob \| history
engine/compbio/engine/local/ExecutableWrapper.java		diff \| blob \| history
engine/compbio/engine/local/LocalEngineUtil.java		diff \| blob \| history
runner/compbio/runner/RunnerUtil.java	[moved from runner/compbio/runner/Util.java with 90% similarity]	diff \| blob \| history
runner/compbio/runner/conservation/AACon.java		diff \| blob \| history
runner/compbio/runner/disorder/Disembl.java		diff \| blob \| history
runner/compbio/runner/disorder/GlobPlot.java		diff \| blob \| history
runner/compbio/runner/disorder/Jronn.java		diff \| blob \| history
runner/compbio/runner/msa/ClustalO.java		diff \| blob \| history
runner/compbio/runner/msa/ClustalW.java		diff \| blob \| history
runner/compbio/runner/msa/Mafft.java		diff \| blob \| history
runner/compbio/runner/msa/Muscle.java		diff \| blob \| history
runner/compbio/runner/msa/Probcons.java		diff \| blob \| history
runner/compbio/runner/msa/Tcoffee.java		diff \| blob \| history
runner/compbio/runner/structure/RNAalifold.java		diff \| blob \| history
testsrc/compbio/engine/cluster/drmaa/DrmaaClusterEngineTester.java		diff \| blob \| history
testsrc/compbio/engine/cluster/drmaa/UtilTester.java		diff \| blob \| history
testsrc/compbio/engine/local/AsyncLocalRunnerTester.java		diff \| blob \| history
testsrc/compbio/engine/local/LocalRunnerTester.java		diff \| blob \| history
testsrc/compbio/runner/conservation/AAConTester.java		diff \| blob \| history
testsrc/compbio/runner/disorder/DisemblTester.java		diff \| blob \| history
testsrc/compbio/runner/disorder/GlobPlotTester.java		diff \| blob \| history
testsrc/compbio/runner/disorder/IUPredTester.java		diff \| blob \| history
testsrc/compbio/runner/disorder/JronnTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/ClustalOTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/ClustalWTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/MafftTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/MuscleTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/ProbconsTester.java		diff \| blob \| history
testsrc/compbio/runner/msa/TcoffeeParametersTester.java		diff \| blob \| history
testsrc/compbio/runner/predictors/JpredTester.java		diff \| blob \| history
testsrc/compbio/runner/structure/RNAalifoldTester.java		diff \| blob \| history
webservices/compbio/stat/servlet/ServiceStatus.java		diff \| blob \| history
webservices/compbio/stat/servlet/StatisticCollector.java		diff \| blob \| history
webservices/compbio/ws/client/WSTester.java		diff \| blob \| history
webservices/compbio/ws/server/ClustalOWS.java		diff \| blob \| history
webservices/compbio/ws/server/ClustalWS.java		diff \| blob \| history
webservices/compbio/ws/server/GAUtils.java		diff \| blob \| history
webservices/compbio/ws/server/GenericMetadataService.java		diff \| blob \| history
webservices/compbio/ws/server/JpredWS.java		diff \| blob \| history
webservices/compbio/ws/server/MafftWS.java		diff \| blob \| history
webservices/compbio/ws/server/MainManager.java		diff \| blob \| history
webservices/compbio/ws/server/MuscleWS.java		diff \| blob \| history
webservices/compbio/ws/server/ProbconsWS.java		diff \| blob \| history
webservices/compbio/ws/server/SetExecutableFlag.java		diff \| blob \| history
webservices/compbio/ws/server/TcoffeeWS.java		diff \| blob \| history
webservices/compbio/ws/server/WSUtil.java		diff \| blob \| history

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