Clean-up, refactoring, commenting. Parameters file containts only options since Jalvi...
authorDaniel Barton <daluke.barton@gmail.com>
Fri, 30 Aug 2013 09:57:53 +0000 (10:57 +0100)
committerDaniel Barton <daluke.barton@gmail.com>
Fri, 30 Aug 2013 09:57:53 +0000 (10:57 +0100)
commitc84ec6492607920b938cfa3645e1a92e15727dd1
tree4af254d659c5f9a6d75448cfc88af6f842422eff
parentc00a86ec130a4bf0bc9b8fc25bbbc7b2912bd62a
Clean-up, refactoring, commenting. Parameters file containts only options since Jalview still can't deal with them
15 files changed:
conf/Executable.properties
conf/settings/RNAalifoldOptionsOnly.xml [new file with mode: 0644]
conf/settings/RNAalifoldParameters.xml
datamodel/compbio/data/sequence/RNAStructScoreManager.java
datamodel/compbio/data/sequence/Range.java
datamodel/compbio/data/sequence/Score.java
runner/compbio/runner/structure/RNAalifold.java
testsrc/compbio/ws/client/TestRNAalifoldWS.java
testsrc/testdata/RNAalifoldParameters.xml [deleted file]
webservices/compbio/data/msa/FoldWS.java [deleted file]
webservices/compbio/ws/client/Jws2Client.java
webservices/compbio/ws/client/Services.java
webservices/compbio/ws/client/WSTester.java
webservices/compbio/ws/server/RNAalifoldWS.java
webservices/compbio/ws/server/WSUtil.java