source.jalview.org Git - jabaws.git/commit

git://source.jalview.org / jabaws.git / commit

author	pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
	Tue, 21 Jun 2011 14:25:36 +0000 (14:25 +0000)
committer	pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
	Tue, 21 Jun 2011 14:25:36 +0000 (14:25 +0000)
commit	d8e1d04583007816f5dc77595d322ba669075ae3
tree	8fe9f031cd1282d19aa9289b1a848ccaa80c82e2	tree \| snapshot
parent	8140043fefd2101326b3e651e3b7e2d4ac806b99	commit \| diff

new version of tcoffee 8.99 not yet compiled for ia32 linux (currently compiled for dundee cluster)

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4298 e3abac25-378b-4346-85de-24260fe3988d

78 files changed:

binaries/src/tcoffee/README	[new file with mode: 0644]	blob
binaries/src/tcoffee/bin/binaries/linux/t_coffee	[new file with mode: 0644]	blob
binaries/src/tcoffee/install	[new file with mode: 0644]	blob
binaries/src/tcoffee/license.txt	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/CUSTOM_evaluate_for_struc.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/TMalign.f	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/aln_compare.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/aln_convertion_util.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/define_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev1.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev1_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev2.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev2_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev3.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev3_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev4.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dev4_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/diagonal.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/dp_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/evaluate.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/evaluate_dirichlet.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/evaluate_for_domain.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/evaluate_for_struc.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/fast_tree_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/fastal.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/fastal_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/fastal_opt_parsing.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/fsa_dp.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/header_list	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/hsearch.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/io_func.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/io_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/iteration.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/makefile	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/matrices.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/parttree.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/pavie_dp.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/pb_util_read_seq_util.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/pb_util_read_sequence.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/perl_header_lib.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/random.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/reformat.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/reformat_struc.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/scoring.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/showpair.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/source_list	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/t_coffee	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/t_coffee.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/t_coffee.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/tree.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/tree_util.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_aln_analyze.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_analyse_constraints_list.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_constraints_list.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_declare.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_domain_constraints_list.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_domain_dp.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_domain_dp_drivers.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_cdna_fasta_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_clean_maln.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_drivers.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_est.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_fasta_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_fasta_sw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_generic_fasta_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_gotoh_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_gotoh_sw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_mm_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_sim.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_ssec_pwaln.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dp_suboptimal_nw.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_dps.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_graph_maln.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_job_handling.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_lib_header.h	[new file with mode: 0644]	blob
binaries/src/tcoffee/t_coffee_source/util_make_tree.c	[new file with mode: 0644]	blob
binaries/src/tcoffee/tclinkdb.txt	[new file with mode: 0644]	blob

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