inprogress
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 27 Nov 2013 06:26:45 +0000 (06:26 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 27 Nov 2013 06:26:45 +0000 (06:26 +0000)
commited149d1b26c50c0673b5491fc639cdcb6afdde2f
tree3f29302226f59dc1c4618a3929a0e2e0a06c2a5e
parent621ed13e126d42a03cc1600d66583aba0769ffcd
inprogress
17 files changed:
forester/java/src/org/forester/application/surfacing.java
forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java
forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
forester/java/src/org/forester/protein/BasicDomain.java
forester/java/src/org/forester/protein/BinaryDomainCombination.java
forester/java/src/org/forester/protein/Domain.java
forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
forester/java/src/org/forester/surfacing/AdjactantDirectedCombinableDomains.java
forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
forester/java/src/org/forester/surfacing/SimpleDomain.java
forester/java/src/org/forester/surfacing/SurfacingUtil.java
forester/java/src/org/forester/surfacing/TestSurfacing.java
forester/java/src/org/forester/test/Test.java