Adding AAConWS
authorpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Mon, 22 Nov 2010 15:09:13 +0000 (15:09 +0000)
committerpvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Mon, 22 Nov 2010 15:09:13 +0000 (15:09 +0000)
commitfab6bab770b548a0c99ed6f5dfb46f5aa99f67c7
treeaebc79441454d9b12881cb79981915a532d8f40b
parentcb02e8a08893701386c270a8bf9d0f08b9cbc4db
Adding AAConWS

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3343 e3abac25-378b-4346-85de-24260fe3988d
29 files changed:
.classpath
TODO.txt
WEB-INF/lib/compbio-util-1.3.jar [moved from WEB-INF/lib/compbio-util-1.2.jar with 80% similarity]
binaries/aaconservation.jar [new file with mode: 0644]
binaries/manual.txt [new file with mode: 0644]
build.xml
conf/Executable.properties
conf/settings/AAConLimits.xml [new file with mode: 0644]
conf/settings/AAConParameters.xml [new file with mode: 0644]
conf/settings/AAConPresets.xml [new file with mode: 0644]
datamodel/compbio/data/sequence/ClustalAlignmentUtil.java
datamodel/compbio/data/sequence/DisemblResultAnnot.java [new file with mode: 0644]
datamodel/compbio/data/sequence/FastaSequence.java
datamodel/compbio/data/sequence/JalviewAnnotation.java [new file with mode: 0644]
datamodel/compbio/data/sequence/MultiAnnotatedSequence.java
datamodel/compbio/data/sequence/SequenceUtil.java
runner/compbio/runner/conservation/AACon.java [new file with mode: 0644]
runner/compbio/runner/disorder/Disembl.java
testsrc/compbio/data/sequence/SequenceUtilTester.java
testsrc/compbio/metadata/AllTestSuit.java
testsrc/compbio/runner/conservation/AAConTester.java [new file with mode: 0644]
testsrc/compbio/runner/disorder/DisemblTester.java [new file with mode: 0644]
testsrc/testdata/TO1381.fasta.aln [new file with mode: 0644]
webservices/compbio/data/msa/Annotation.java [new file with mode: 0644]
webservices/compbio/data/msa/JManagement.java [new file with mode: 0644]
webservices/compbio/data/msa/Metadata.java [new file with mode: 0644]
webservices/compbio/data/msa/MsaWS.java
webservices/compbio/ws/server/AAConWS.java [new file with mode: 0644]
webservices/compbio/ws/server/WSUtil.java