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use .jalview.uniprot.xml
author
amwaterhouse
<Andrew Waterhouse>
Wed, 15 Jun 2005 15:06:22 +0000
(15:06 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 15 Jun 2005 15:06:22 +0000
(15:06 +0000)
src/jalview/io/SequenceFeatureFetcher.java
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diff --git
a/src/jalview/io/SequenceFeatureFetcher.java
b/src/jalview/io/SequenceFeatureFetcher.java
index
bb404d8
..
cdd628b
100755
(executable)
--- a/
src/jalview/io/SequenceFeatureFetcher.java
+++ b/
src/jalview/io/SequenceFeatureFetcher.java
@@
-46,16
+46,11
@@
public class SequenceFeatureFetcher implements Runnable {
}
\r
\r
public void run() {
\r
}
\r
\r
public void run() {
\r
- String cache = jalview.bin.Cache.getProperty("UNIPROT_CACHE");
\r
\r
RandomAccessFile out = null;
\r
\r
try {
\r
\r
RandomAccessFile out = null;
\r
\r
try {
\r
- if (cache == null) {
\r
- jalview.bin.Cache.setProperty("UNIPROT_CACHE",
\r
- System.getProperty("user.home") + "/.jalview.uniprot.xml");
\r
- cache = jalview.bin.Cache.getProperty("UNIPROT_CACHE");
\r
- }
\r
+ String cache = System.getProperty("user.home") + "/.jalview.uniprot.xml";
\r
\r
File test = new File(cache);
\r
\r
\r
File test = new File(cache);
\r
\r
@@
-117,7
+112,6
@@
public class SequenceFeatureFetcher implements Runnable {
ex.printStackTrace();
\r
}
\r
\r
ex.printStackTrace();
\r
}
\r
\r
- jalview.gui.PaintRefresher.Refresh(null, align);
\r
findMissingIds(align);
\r
\r
if (sbuffer.length() > 0) {
\r
findMissingIds(align);
\r
\r
if (sbuffer.length() > 0) {
\r
@@
-133,6
+127,8
@@
public class SequenceFeatureFetcher implements Runnable {
//ignore for now!!!!!!!!!!
\r
// WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);
\r
}
\r
//ignore for now!!!!!!!!!!
\r
// WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);
\r
}
\r
+
\r
+ jalview.gui.PaintRefresher.Refresh(null, align);
\r
}
\r
\r
void ReadUniprotFile(String[] result, RandomAccessFile out, AlignmentI align) {
\r
}
\r
\r
void ReadUniprotFile(String[] result, RandomAccessFile out, AlignmentI align) {
\r