- wsdbfetch REST service<!--<a href='http://issues.jalview.org/browse/JAL-636'>JAL-636</a>-->
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-368'>JAL-368</a>] - -->
- <!--[<a href='http://issues.jalview.org/browse/JAL-153'>JAL-153</a>] - -->Stop
- windows being moved outside desktop on OSX
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-758'>JAL-758</a>] - -->Filetype
- associations not installed for webstart launch
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-849'>JAL-849</a>] - -->Jalview
- does not always retrieve progress of a JABAWS job execution in
- full once it is complete
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-979'>JAL-979</a>] - -->revise
- SHMR RSBS definition to ensure alignment is uploaded via ali_file
- parameter
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-980'>JAL-980</a>] - -->Jalview
- 2.7 is incompatible with Jmol-12.2.2
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-983'>JAL-983</a>] - -->View
- all structures superposed fails with exception
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-994'>JAL-994</a>] - -->Jnet
- job queues forever if a very short sequence is submitted for
- prediction
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1004'>JAL-1004</a>] - -->Cut
- and paste menu not opened when mouse clicked on desktop window
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1010'>JAL-1010</a>] - -->Putting
- fractional value into integer text box in alignment parameter
- dialog causes jalview to hang
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1022'>JAL-1022</a>] - -->Structure
- view highlighting doesn't work on windows 7
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1023'>JAL-1023</a>] - -->View
- all structures fails with exception shown in structure view
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1025'>JAL-1025</a>] - -->Characters
- in filename associated with PDBEntry not escaped in a platform
- independent way
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1026'>JAL-1026</a>] - -->Jalview
- desktop fails to launch with exception when using proxy
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1031'>JAL-1031</a>] - -->Tree
- calculation reports 'you must have 2 or more sequences
- selected' when selection is empty
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1040'>JAL-1040</a>] - -->Jalview
- desktop fails to launch with jar signature failure when java web
- start temporary file caching is disabled
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1062'>JAL-1062</a>] - -->DAS
- Sequence retrieval with range qualification results in sequence
- xref which includes range qualification
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1087'>JAL-1087</a>] - -->Errors
- during processing of command line arguments cause progress bar
- (JAL-898) to be removed
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1097'>JAL-1097</a>] - -->Replace
- comma for semi-colon option not disabled for DAS sources in
- sequence fetcher
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1111'>JAL-1111</a>] - -->Cannot
- close news reader when JABAWS server warning dialog is shown
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1127'>JAL-1127</a>] - -->Option
- widgets not updated to reflect user settings
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1131'>JAL-1131</a>] - -->Edited
- sequence not submitted to web service
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1134'>JAL-1134</a>] - -->Jalview
- 2.7 Webstart does not launch on mountain lion
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1135'>JAL-1135</a>] - -->InstallAnywhere
- installer doesn't unpack and run on OSX Mountain Lion
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1144'>JAL-1144</a>] - -->Annotation
- panel not given a scroll bar when sequences with alignment
- annotation are pasted into the alignment
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1148'>JAL-1148</a>] - -->Sequence
- associated annotation rows not associated when loaded from jalview
- project
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1149'>JAL-1149</a>] - -->Browser
- launch fails with NPE on java 1.7
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1171'>JAL-1171</a>] - -->JABAWS
- alignment marked as finished when job was cancelled or job failed
- due to invalid input
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1185'>JAL-1185</a>] - -->NPE
- with v2.7 example when clicking on Tree associated with all views
- </li>
- <li>
- <!--[<a href='http://issues.jalview.org/browse/JAL-1145'>JAL-1145</a>] - -->Exceptions
- when copy/paste sequences with grouped annotation rows to new
- window
+ wsdbfetch REST service</li>
+ <li>Stop windows being moved outside desktop on OSX</li>
+ <li>Filetype associations not installed for webstart launch</li>
+ <li>Jalview does not always retrieve progress of a JABAWS job
+ execution in full once it is complete</li>
+ <li>revise SHMR RSBS definition to ensure alignment is
+ uploaded via ali_file parameter</li>
+ <li>Jalview 2.7 is incompatible with Jmol-12.2.2</li>
+ <li>View all structures superposed fails with exception</li>
+ <li>Jnet job queues forever if a very short sequence is
+ submitted for prediction</li>
+ <li>Cut and paste menu not opened when mouse clicked on
+ desktop window</li>
+ <li>Putting fractional value into integer text box in
+ alignment parameter dialog causes Jalview to hang</li>
+ <li>Structure view highlighting doesn't work on windows 7