+\r
+##################################################################################################################################\r
+# log4j.properties from runner/\r
+\r
+#log4j.appender.stdout=org.apache.log4j.ConsoleAppender\r
+#log4j.appender.stdout.Target=System.out\r
+#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.stdout.layout.ConversionPattern=%m%n\r
+#log4j.rootLogger=info, stdout\r
+\r
+log4j.rootLogger=TRACE, rootfile\r
+log4j.appender.rootfile=org.apache.log4j.FileAppender\r
+log4j.appender.rootfile.File=${catalina.base}/logs/JABAWSLogFilename.log1\r
+log4j.appender.rootfile.Target=System.out\r
+log4j.appender.rootfile.layout=org.apache.log4j.PatternLayout\r
+log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n\r
+\r
+# %d{ABSOLUTE} %5p %c{1}:%L -\r
+log4j.logger.compbio=TRACE, B\r
+log4j.appender.B=org.apache.log4j.FileAppender\r
+#log4j.appender.B.File=engine.log\r
+log4j.appender.B.File=${catalina.base}/logs/engine.log\r
+log4j.appender.B.layout=org.apache.log4j.PatternLayout\r
+log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
+\r
+# %d{ABSOLUTE} %5p %c{1}:%L -\r
+#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C\r
+#log4j.appender.C=org.apache.log4j.FileAppender\r
+#log4j.appender.C.File=LocalExecutorService.log\r
+#log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.C.layout.ConversionPattern=%m%n\r
+# %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
+\r
+#log4j.logger.RunnerLogger=ERROR, D\r
+#log4j.appender.D=org.apache.log4j.ConsoleAppender \r
+#log4j.appender.D.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.D.layout.ConversionPattern=%r [%t] %p %c %x - %m%n\r