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phylotastic hackathon at NESCENT 120606
authorcmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Thu, 7 Jun 2012 06:38:50 +0000 (06:38 +0000)
committercmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Thu, 7 Jun 2012 06:38:50 +0000 (06:38 +0000)
forester/java/src/org/forester/archaeopteryx/AptxUtil.java patch | blob | history
forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java patch | blob | history
forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java patch | blob | history

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
index f49792c..a2c4550 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
@@ -83,7 +83,7 @@ import org.forester.phylogeny.iterators.PreorderTreeIterator;
 import org.forester.util.AsciiHistogram;
 import org.forester.util.DescriptiveStatistics;
 import org.forester.util.ForesterUtil;
-import org.forester.ws.uniprot.UniProtTaxonomy;
+import org.forester.ws.seqdb.UniProtTaxonomy;
 
 public final class AptxUtil {
 
diff --git a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
index ec8ba76..55a740d 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
@@ -34,7 +34,7 @@ import org.forester.analysis.AncestralTaxonomyInferenceException;
 import org.forester.archaeopteryx.MainFrameApplication;
 import org.forester.archaeopteryx.TreePanel;
 import org.forester.phylogeny.Phylogeny;
-import org.forester.ws.uniprot.SequenceDbWsTools;
+import org.forester.ws.seqdb.SequenceDbWsTools;
 
 public class AncestralTaxonomyInferrer extends RunnableProcess {
 
diff --git a/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java b/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
index d389aec..508d60f 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
@@ -43,8 +43,8 @@ import org.forester.phylogeny.data.Taxonomy;
 import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 import org.forester.util.ForesterUtil;
 import org.forester.util.SequenceIdParser;
-import org.forester.ws.uniprot.SequenceDatabaseEntry;
-import org.forester.ws.uniprot.SequenceDbWsTools;
+import org.forester.ws.seqdb.SequenceDatabaseEntry;
+import org.forester.ws.seqdb.SequenceDbWsTools;
 
 public final class SequenceDataRetriver extends RunnableProcess {