group consensus/conservation calculated from start to end

diff --git a/src/jalview/gui/ConservationThread.java b/src/jalview/gui/ConservationThread.java
index 4fc1103..4b921ac 100644 (file)
--- a/src/jalview/gui/ConservationThread.java
+++ b/src/jalview/gui/ConservationThread.java
@@ -62,7 +62,7 @@ class ConservationThread extends Thread
       {
         cons.findQuality();
       }
-      cons.completeAnnotations(alignViewport.conservation,alignViewport.quality, alWidth);
+      cons.completeAnnotations(alignViewport.conservation,alignViewport.quality, 0, alWidth);
     } catch (OutOfMemoryError error)
     {
       new OOMWarning("calculating conservation", error);