--- /dev/null
+</div>
+
+<!--/body and footer -->
+<hr>
+<div class="container">
+ <div class="row">
+ <div class="col-md-3">
+ <ul class="list-unstyled">
+ <li>
+ <strong><a href="http://www.compbio.dundee.ac.uk/">The Barton Group</a></strong>
+ </li>
+ </ul>
+ <a href="http://www.compbio.dundee.ac.uk/"><img src="${pageContext.request.contextPath}/static/img/BG_with_text.svg" style="width:55%; height:55%"
+ alt="Barton Group Logo with Text at Bottom"></a>
+ </div>
+
+ <div class="col-md-3">
+
+ <ul class="list-unstyled">
+ <li>
+ <strong><a href="${pageContext.request.contextPath}/index.jsp">JABAWS</a></strong>
+ </li>
+ <ul>
+ <li>
+ <a href="${pageContext.request.contextPath}/getting_started.jsp">Getting Started</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/download.jsp">Download</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/about.jsp">About</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/about.jsp#mailing">Mailing List</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/about.jsp#citing">Citing JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/ServiceStatus" title="JABAWS webservices status. Click to test all web services.
+ Please be patient while the services are being checked" id="show_hidden3">Services Status</a>
+ </li>
+
+ <li>
+ <a href="${pageContext.request.contextPath}/PublicAnnualStat" title="JABAWS server usage statistics"
+ id="show_hidden4">Usage Statistics</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/about.jsp#funding">Funding</a>
+ </li>
+ </ul>
+ </li>
+ </ul>
+ </div>
+ <div class="col-md-4">
+ <ul class="list-unstyled">
+ <li>
+ <strong><a href="${pageContext.request.contextPath}/man_docs.jsp">Documentation</a></strong>
+ <ul>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_about.jsp">What is JABAWS?</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_servervm.jsp">Virtual Appliance</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_serverwar.jsp">Web Application Archive</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_client.jsp">Command Line Client</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_configuration.jsp">Configure JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_dev.jsp">Accessing JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_server_dev.jsp">Develop JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_stats.jsp">Usage Statistics</a>
+ </li>
+ </ul>
+ </li>
+ </ul>
+ </div>
+ <div class="col-md-2">
+ <p>
+ <a href="#">Back to top <i class="fa fa-arrow-up" aria-hidden="true"></i></a>
+ </p>
+ </div>
+ </div>
+ <hr>
+ <p class="text-right"><small>
+ Site Last updated: XX February 2017. This site was built using the <a href="http://getbootstrap.com">Bootstrap framework.</a>
+ </small></p>
+</div>
+
+<!-- Bootstrap core JavaScript
+================================================== -->
+<!-- Placed at the end of the document so the pages load faster -->
+<script type="text/javascript" src="${pageContext.request.contextPath}/static/js/jquery-1.12.4.min.js"></script>
+<script type="text/javascript" src="${pageContext.request.contextPath}/static/js/bootstrap.min.js"></script>
+<script type="text/javascript" src="${pageContext.request.contextPath}/static/js/main.js" ></script>
+<script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.9.0/highlight.min.js"></script>
+<script>hljs.initHighlightingOnLoad();</script>
+</body>
+</html>
\ No newline at end of file
--- /dev/null
+<!DOCTYPE html>
+<html lang="en">
+
+<!-- Header for BG group pages - different for each page... -->
+<head id="top">
+ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
+ <meta charset="utf-8">
+ <!--<meta http-equiv="X-UA-Compatible" content="IE=edge">-->
+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
+
+ <meta name="description" content="Java Bioinformatics Analyses Web Services (JABAWS) at the Barton Group -
+ Bioinformatics Research Group in the Division of Computational Biology,
+ School of Life Sciences, University of Dundee, UK.">
+ <meta name="author" content="Fábio Madeira (v2.2)">
+
+ <title>JABAWS | Java Bioinformatics Analyses Web Services (JABAWS) | ${param.title}</title>
+
+ <!-- Header section of BG website pages - includes navbar and logos must be used with an h2-xxxx.html file before -->
+
+ <!-- Google Analytics -->
+ <script>
+ (function(i, s, o, g, r, a, m) {
+ i['GoogleAnalyticsObject'] = r;
+ i[r] = i[r] ||
+ function() {
+ (i[r].q = i[r].q || []).push(arguments)
+ }, i[r].l = 1 * new Date();
+ a = s.createElement(o), m = s.getElementsByTagName(o)[0];
+ a.async = 1;
+ a.src = g;
+ m.parentNode.insertBefore(a, m)
+ })(window, document, 'script', 'https://www.google-analytics.com/analytics.js', 'ga');
+
+ ga('create', 'UA-5356328-1', 'auto');
+ ga('send', 'pageview');
+ </script>
+ <!-- End Google Analytics -->
+
+ <link rel="shortcut icon" href="${pageContext.request.contextPath}/static/img/BG_intense2_small.ico">
+ <%--<!-- Bootstrap core CSS -->--%>
+ <link href="${pageContext.request.contextPath}/static/css/bootstrap.min.css" rel="stylesheet">
+ <link href="${pageContext.request.contextPath}/static/css/font-awesome.min.css" rel="stylesheet">
+ <%--<%–<!-- Barton Group specific CSS -->–%>--%>
+ <link href="${pageContext.request.contextPath}/static/css/main.css" rel="stylesheet">
+ <link href="${pageContext.request.contextPath}/static/css/table.css" rel="stylesheet">
+ <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.9.0/styles/default.min.css">
+ ${param.html_custom_css}
+ ${param.html_custom_js}
+
+</head>
+<!--/navbar and header -->
+
+
+<body>
+<hr />
+<!-- BG header part -->
+<div class="container" id="mainpage">
+ <div class="row">
+ <div class="col-md-2 col-xs-2 text-right">
+ <a href="http://www.compbio.dundee.ac.uk/"><img src="${pageContext.request.contextPath}/static/img/BG_with_text.svg" style="width:80%;height:80%" alt="Barton Group Logo"></a>
+ </div>
+ <div class="col-md-2 col-xs-2 text-left">
+ <a href="http://www.dundee.ac.uk"><img src="${pageContext.request.contextPath}/static/img/University_white_logo.svg" style="width:90%;height:90%" alt="University of Dundee Logo"></a>
+ </div>
+ <div class="col-md-7 col-xs-7 text-left">
+ <a href="/"><img src="${pageContext.request.contextPath}/static/img/jabaws2.2.svg" style="width:90%;height:90%" alt="Barton Group Banner"></a>
+ </div>
+ <div class="col-md-1 col-xs-1 text-left"></div>
+ <!--<div class="col-md-1 col-xs-1 text-left"></div>-->
+ <!--<div class="col-md-10 col-xs-10 text-left">-->
+ <!--<img src="static/jabaws2.2_header.svg" style="width:100%;height:100%" alt="Barton Group Banner">-->
+ <!--</div>-->
+ <!--<div class="col-md-2 col-xs-2 text-left"></div>-->
+ </div>
+</div>
+<!--navbar region -->
+<div class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ </div>
+ <div class="collapse navbar-collapse">
+ <ul class="nav navbar-nav">
+ <li>
+ <a href="${pageContext.request.contextPath}/"><i class="fa fa-home" aria-hidden="true"></i> Home</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/getting_started.jsp" ><i class="fa fa-fighter-jet" aria-hidden="true"></i> Getting Started</a>
+ </li>
+
+ <li>
+ <a href="${pageContext.request.contextPath}/download.jsp" ><i class="fa fa-download" aria-hidden="true"></i> Download</a>
+ </li>
+
+ <li class="dropdown">
+ <a href="${pageContext.request.contextPath}/man_about.jsp" class="dropdown-toggle" data-toggle="dropdown">
+ <i class="fa fa-file-text-o" aria-hidden="true"></i> Documentation<b class="caret"></b></a>
+ <ul class="dropdown-menu">
+ <li>
+ <a href="${pageContext.request.contextPath}/man_about.jsp">What is JABAWS?</a>
+ </li>
+ <li class="divider"></li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_servervm.jsp">Virtual Appliance</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_serverwar.jsp">Web Application Archive</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_client.jsp">Command Line Client</a>
+ </li>
+ <li class="divider"></li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_configuration.jsp">Configure JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_dev.jsp">Accessing JABAWS</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_server_dev.jsp">Develop JABAWS</a>
+ </li>
+ <li class="divider"></li>
+ <li>
+ <a href="${pageContext.request.contextPath}/man_stats.jsp">Usage Statistics</a>
+ </li>
+ </ul>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/ServiceStatus"
+ title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked"
+ id="show_hidden1">
+ <i class="fa fa-cogs" aria-hidden="true"></i> Services Status</a>
+ </li>
+ <li>
+ <a href="${pageContext.request.contextPath}/PublicAnnualStat" title="JABAWS server usage statistics" id="show_hidden2">
+ <i class="fa fa-bar-chart" aria-hidden="true"></i> Usage Statistics</a>
+ </li>
+ <!--Includes funding and contacts (v2.2)-->
+ <li>
+ <a href="${pageContext.request.contextPath}/about.jsp" ><i class="fa fa-info-circle" aria-hidden="true"></i> About</a>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div>
+</div>
+<!--/navbar and header -->
+
+<!--body -->
+<div class="container">
+ <div class="row">
+ <div class="col-md-3"></div>
+ <div class="col-md-6">
+ <div class="center-block">
+ <hidden_loader style="display:none;">
+ <div class="alert alert-warning" role="alert">
+ <p style="text-align: center; font-size: 15px">
+ <img src="${pageContext.request.contextPath}/static/img/loader.gif" style="width:7%;height:7%">
+ This call may take a while to be served...
+ </p>
+ </div>
+ </hidden_loader>
+ </div>
+ </div>
+ <div class="col-md-3"></div>
+ </div>
git://source.jalview.org / jabaws.git / commitdiff