Globprot need a proper reference to bio python and sav_gol binaries -> they should be \r
somehow taken from disembl. \r
\r
-Add registry service to query services status\r
++Add registry service to query services status\r
\r
-Refactor web services checker to enable a programmatic access to its methods.\r
-Rename it to avoid confusion with jabaws client\r
-\r
-Finish the client\r
++Refactor web services checker to enable a programmatic access to its methods.\r
++Finish the client\r
\r
Add interface for Jalview annotation \r
Add the method to return Jalview Annotation to SequenceAnnotation IF \r
chmod +x GlobPlot.py
cd ..
+echo "Compiling IUPred..."
+cd iupred
+make clean
+make
+echo "DONE"
+chmod +x iupred
+cd ..
+
echo "Setting executable flag for GlobPlot..."
chmod +x globplot/GlobPlot.py globplot/sav_gol
+
+echo "Setting executable flag for IUPred..."
+chmod +x iupred/iupred
globplot.limits.file=conf/settings/GlobPlotLimits.xml\r
globplot.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M\r
\r
+### IUPred configuration ### \r
+#local.iupred.bin.windows= \r
+local.iupred.bin=binaries/src/iupred/iupred\r
+# tcoffee.bin.env=IUPred_PATH#/homes/pvtroshin/workspace/jaba2/binaries/src/iupred;\r
+cluster.iupred.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/iupred/iupred\r
+iupred.parameters.file=conf/settings/UIPredParameters.xml\r
+iupred.limits.file=conf/settings/UIPredLimits.xml\r
+iupred.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M\r
\r
### AACon configuration ###\r
local.aacon.bin.windows=D:\\Java\\jdk1.6.0_24\\bin\\java.exe \r
outWriter.close();\r
}\r
\r
+ /**\r
+ * Read IUPred output\r
+ * \r
+ * @param result\r
+ * @return\r
+ * @throws IOException\r
+ * @throws UnknownFileFormatException\r
+ */\r
+ public static Map<String, Score> readIUPred(final File result,\r
+ IUPredResult type) throws IOException, UnknownFileFormatException {\r
+ InputStream input = new FileInputStream(result);\r
+ Map<String, Score> sequences = readIUPred(input, type);\r
+ input.close();\r
+ return sequences;\r
+ }\r
+\r
+ // Check the type of the file e.g. long| short or domain\r
+ // and read\r
+ /**\r
+ * ## Long Disorder\r
+ * \r
+ * # P53_HUMAN\r
+ * \r
+ * 1 M 0.9943\r
+ * \r
+ * 2 E 0.9917\r
+ * \r
+ * 3 E 0.9879\r
+ * \r
+ * (every line)\r
+ * \r
+ * @throws IOException\r
+ * @throws UnknownFileFormatException\r
+ * \r
+ * \r
+ */\r
+ private static Map<String, Score> readIUPred(InputStream input,\r
+ IUPredResult type) throws IOException, UnknownFileFormatException {\r
+\r
+ Score score = null;\r
+ final Map<String, Score> seqs = new HashMap<String, Score>();\r
+ Scanner scan = new Scanner(input);\r
+ scan.useDelimiter("#");\r
+ while (scan.hasNext()) {\r
+ String nextEntry = scan.next();\r
+ Scanner entry = new Scanner(nextEntry);\r
+ String name = entry.nextLine();\r
+ // inside entry:\r
+ if (IUPredResult.Glob == type) {\r
+ // parse domains\r
+ TreeSet<Range> ranges = parseIUPredDomains(entry);\r
+ score = new Score(type, ranges);\r
+ } else {\r
+ // parse short | long\r
+ float[] scores = parseIUPredScores(entry);\r
+ score = new Score(type, scores);\r
+ }\r
+ entry.close();\r
+ seqs.put(name, score);\r
+ }\r
+\r
+ scan.close();\r
+ return seqs;\r
+ }\r
+\r
+ /**\r
+ * # P53_HUMA\r
+ * \r
+ * Number of globular domains: 2\r
+ * \r
+ * globular domain 1. 98 - 269\r
+ * \r
+ * globular domain 2. 431 - 482\r
+ * \r
+ * >P53_HUMA\r
+ * \r
+ * meepqsdpsv epplsqetfs dlwkllpenn vlsplpsqam ddlmlspddi eqwftedpgp\r
+ * \r
+ * @param scan\r
+ */\r
+ private static TreeSet<Range> parseIUPredDomains(Scanner scan) {\r
+ String header = "Number of globular domains:";\r
+ String domainPref = "globular domain";\r
+ TreeSet<Range> ranges = new TreeSet<Range>();\r
+ String line = scan.nextLine().trim();\r
+ assert line.startsWith(header);\r
+ line = line.substring(header.length()).trim();\r
+ int domainNum = Integer.parseInt(line);\r
+ if (domainNum == 0) {\r
+ return ranges;\r
+ }\r
+\r
+ for (int i = 0; i < domainNum; i++) {\r
+ assert scan.hasNextLine();\r
+ line = scan.nextLine();\r
+ assert line.trim().startsWith(domainPref);\r
+ line = line.substring(line.indexOf(".") + 1).trim();\r
+ Range r = new Range(line.split("-"));\r
+ ranges.add(r);\r
+ }\r
+\r
+ return ranges;\r
+ }\r
+ /*\r
+ * 1 M 0.9943\r
+ * \r
+ * 2 E 0.9917\r
+ */\r
+ private static float[] parseIUPredScores(Scanner scan)\r
+ throws UnknownFileFormatException {\r
+ List<String> annotation = new ArrayList<String>();\r
+ while (scan.hasNextLine()) {\r
+ String line = scan.nextLine().trim();\r
+ String[] val = line.split("\\s+");\r
+ annotation.add(val[2]);\r
+ }\r
+ return convertToNumber(annotation\r
+ .toArray(new String[annotation.size()]));\r
+ }\r
+\r
public static Map<String, Score> readJRonn(final File result)\r
throws IOException, UnknownFileFormatException {\r
InputStream input = new FileInputStream(result);\r
SmoothedScore,\r
/** This a score with no range */\r
RawScore\r
+}\r
+\r
+enum IUPredResult {\r
+ /**\r
+ * Short disorder\r
+ */\r
+ Short,\r
+ /**\r
+ * Long disorder\r
+ */\r
+ Long,\r
+ /**\r
+ * Globular domains\r
+ */\r
+ Glob\r
}
\ No newline at end of file
import static org.testng.AssertJUnit.assertTrue;\r
import static org.testng.AssertJUnit.fail;\r
\r
+import java.io.File;\r
import java.io.FileInputStream;\r
import java.io.FileNotFoundException;\r
import java.io.FileOutputStream;\r
}\r
\r
@Test\r
+ public void testReadIUPredForShortAndLongDisorder() {\r
+ try {\r
+ Map<String, Score> scores = SequenceUtil.readIUPred(new File(\r
+ AllTestSuit.TEST_DATA_PATH, "output.long"),\r
+ IUPredResult.Long);\r
+ ScoreManager man = ScoreManager.newInstanceSingleScore(scores);\r
+ man.writeOut(new PrintWriter(System.out, true));\r
+ } catch (IOException e) {\r
+ e.printStackTrace();\r
+ fail(e.getLocalizedMessage());\r
+ } catch (UnknownFileFormatException e) {\r
+ e.printStackTrace();\r
+ fail(e.getLocalizedMessage());\r
+ }\r
+ }\r
+\r
+ @Test\r
+ public void testReadIUPredForGlobDomain() {\r
+ try {\r
+ Map<String, Score> scores = SequenceUtil.readIUPred(new File(\r
+ AllTestSuit.TEST_DATA_PATH, "output.glob"),\r
+ IUPredResult.Glob);\r
+ ScoreManager man = ScoreManager.newInstanceSingleScore(scores);\r
+ man.writeOut(new PrintWriter(System.out, true));\r
+ } catch (IOException e) {\r
+ e.printStackTrace();\r
+ fail(e.getLocalizedMessage());\r
+ } catch (UnknownFileFormatException e) {\r
+ e.printStackTrace();\r
+ fail(e.getLocalizedMessage());\r
+ }\r
+ }\r
+\r
+ @Test\r
public void testReadAAConResults() {\r
try {\r
InputStream inStream = new FileInputStream(\r
--- /dev/null
+# P53_HUMA
+Number of globular domains: 2
+ globular domain 1. 98 - 269
+ globular domain 2. 431 - 482
+>P53_HUMA
+meepqsdpsv epplsqetfs dlwkllpenn vlsplpsqam ddlmlspddi eqwftedpgp
+deaprmpeaa ppvapapaap tpaapapaps wplsssvPSQ KTYQGSYGFR LGFLHSGTAK
+SVTCTYSPAL NKMFCQLAKT CPVQLWVDST PPPGTRVRAM AIYKQSQHMT EVVRRCPHHE
+RCSDSDGLAP PQHLIRVEGN LRVEYLDDRN TFRHSVVVPY EPPEVGSDCT TIHYNYMCNS
+SCMGGMNRRP ILTIITLEDS SGNLLGRNSf evrvcacpgr drrteeenlr kkgephhelp
+pgstkralpn ntssspqpkk kpldgeyftl qirgrerfem frelnealel kdaqagkepg
+gsrahsshlk skkgqstsrh kklmfktegp dsdrcsdsdg lappqhlirv egnlrveyld
+drntfrhsvv VPYEPPEVGS DCTTIHYNYM CNSSCMGGMN RRPILTIITL EDSSGNLLGR
+NSfevrvcac pgrdrrteee nlrkkgephh elppgstkra lpnntssspq pkkkpldgey
+ftlqirgrer femfrelnea lelkdaqagk epggsrahss hlkskkgq
+# Foobar_dundeefriends
+Number of globular domains: 0
+>Foobar_dundeefriends
+meepqsdpsv epplsqetfs dlwkllpenn vlsplpsqam ddlmlspddi eqwftedpgp
--- /dev/null
+# P50_HUMAN
+ 1 M 0.9943
+ 2 E 0.9917
+ 3 E 0.9879
+ 4 P 0.9831
+ 5 Q 0.9553
+ 6 S 0.9316
+ 7 D 0.9208
+ 8 P 0.9119
+ 9 S 0.8857
+ 10 V 0.7951
+ 11 E 0.7605
+ 12 P 0.8074
+ 13 P 0.7342
+ 14 L 0.6374
+ 15 S 0.6035
+ 16 Q 0.5331
+ 17 E 0.4781
+ 18 T 0.4825
+ 19 F 0.4825
+ 20 S 0.4879
+ 21 D 0.5374
+ 22 L 0.4600
+ 23 W 0.3668
+ 24 K 0.3456
+ 25 L 0.4282
+ 26 L 0.3578
+ 27 P 0.3630
+ 28 E 0.3399
+ 29 N 0.3578
+ 30 N 0.4116
+ 31 V 0.3762
+ 32 L 0.3668
+ 33 S 0.4420
+ 34 P 0.4749
+ 35 L 0.4556
+ 36 P 0.4458
+ 37 S 0.5084
+ 38 Q 0.5043
+ 39 A 0.5043
+ 40 M 0.5331
+ 41 D 0.4781
+ 42 D 0.5623
+ 43 L 0.6604
+ 44 M 0.5900
+ 45 L 0.5084
+ 46 S 0.5802
+ 47 P 0.5802
+ 48 D 0.6174
+ 49 D 0.6124
+ 50 I 0.6374
+ 51 E 0.6827
+ 52 Q 0.6906
+ 53 W 0.7034
+ 54 F 0.7418
+ 55 T 0.7817
+ 56 E 0.8311
+ 57 D 0.8001
+ 58 P 0.7912
+ 59 G 0.7912
+ 60 P 0.7540
+ 61 D 0.7951
+ 62 E 0.7817
+ 63 A 0.7644
+ 64 P 0.7912
+ 65 R 0.8311
+ 66 M 0.8311
+ 67 P 0.7912
+ 68 E 0.7688
+ 69 A 0.7418
+ 70 A 0.7232
+ 71 P 0.7147
+ 72 P 0.6906
+ 73 V 0.6715
+ 74 A 0.6681
+ 75 P 0.6374
+ 76 A 0.6516
+ 77 P 0.6650
+ 78 A 0.6604
+ 79 A 0.6124
+ 80 P 0.6334
+ 81 T 0.6374
+ 82 P 0.5514
+ 83 A 0.5514
+ 84 A 0.5412
+ 85 P 0.5514
+ 86 A 0.5374
+ 87 P 0.5473
+ 88 A 0.4825
+ 89 P 0.5084
+ 90 S 0.5126
+ 91 W 0.5229
+ 92 P 0.5126
+ 93 L 0.5043
+ 94 S 0.4379
+ 95 S 0.4781
+ 96 S 0.4600
+ 97 V 0.4781
+ 98 P 0.3806
+ 99 S 0.4078
+ 100 Q 0.3096
+ 101 K 0.3263
+ 102 T 0.3399
+ 103 Y 0.3184
+ 104 Q 0.2820
+ 105 G 0.2167
+ 106 S 0.2122
+ 107 Y 0.2080
+ 108 G 0.2558
+ 109 F 0.2255
+ 110 R 0.1921
+ 111 L 0.1766
+ 112 G 0.1732
+ 113 F 0.1205
+ 114 L 0.1732
+ 115 H 0.0723
+ 116 S 0.0701
+ 117 G 0.0405
+ 118 T 0.0643
+ 119 A 0.0771
+ 120 K 0.1018
+ 121 S 0.0587
+ 122 V 0.0884
+ 123 T 0.0884
+ 124 C 0.1240
+ 125 T 0.1088
+ 126 Y 0.0554
+ 127 S 0.0607
+ 128 P 0.0441
+ 129 A 0.0387
+ 130 L 0.0490
+ 131 N 0.0478
+ 132 K 0.0231
+ 133 M 0.0414
+ 134 F 0.0297
+ 135 C 0.0701
+ 136 Q 0.0502
+ 137 L 0.0567
+ 138 A 0.0405
+ 139 K 0.0363
+ 140 T 0.0464
+ 141 C 0.0701
+ 142 P 0.0832
+ 143 V 0.0991
+ 144 Q 0.1322
+ 145 L 0.1998
+ 146 W 0.3146
+ 147 V 0.3146
+ 148 D 0.3184
+ 149 S 0.3578
+ 150 T 0.3311
+ 151 P 0.3184
+ 152 P 0.4203
+ 153 P 0.3578
+ 154 G 0.3578
+ 155 T 0.3578
+ 156 R 0.4282
+ 157 V 0.5084
+ 158 R 0.5802
+ 159 A 0.5667
+ 160 M 0.5473
+ 161 A 0.5514
+ 162 I 0.5331
+ 163 Y 0.4749
+ 164 K 0.4037
+ 165 Q 0.4116
+ 166 S 0.4203
+ 167 Q 0.3184
+ 168 H 0.4037
+ 169 M 0.4037
+ 170 T 0.4282
+ 171 E 0.4513
+ 172 V 0.4749
+ 173 V 0.4116
+ 174 R 0.4825
+ 175 R 0.4918
+ 176 C 0.4879
+ 177 P 0.4918
+ 178 H 0.4825
+ 179 H 0.4245
+ 180 E 0.4333
+ 181 R 0.4651
+ 182 C 0.4879
+ 183 S 0.5412
+ 184 D 0.5802
+ 185 S 0.5126
+ 186 D 0.4458
+ 187 G 0.5374
+ 188 L 0.4600
+ 189 A 0.4600
+ 190 P 0.4600
+ 191 P 0.4600
+ 192 Q 0.3992
+ 193 H 0.4879
+ 194 L 0.4282
+ 195 I 0.4333
+ 196 R 0.3668
+ 197 V 0.3005
+ 198 E 0.3096
+ 199 G 0.3847
+ 200 N 0.3939
+ 201 L 0.3630
+ 202 R 0.3359
+ 203 V 0.2292
+ 204 E 0.2292
+ 205 Y 0.2748
+ 206 L 0.3399
+ 207 D 0.2963
+ 208 D 0.2963
+ 209 R 0.2385
+ 210 N 0.2531
+ 211 T 0.1805
+ 212 F 0.2531
+ 213 R 0.2786
+ 214 H 0.3456
+ 215 S 0.3399
+ 216 V 0.3491
+ 217 V 0.4037
+ 218 V 0.3885
+ 219 P 0.3806
+ 220 Y 0.2748
+ 221 E 0.2700
+ 222 P 0.2657
+ 223 P 0.2963
+ 224 E 0.2865
+ 225 V 0.2167
+ 226 G 0.2080
+ 227 S 0.1844
+ 228 D 0.2041
+ 229 C 0.1602
+ 230 T 0.1416
+ 231 T 0.2041
+ 232 I 0.1958
+ 233 H 0.1018
+ 234 Y 0.0744
+ 235 N 0.0677
+ 236 Y 0.0909
+ 237 M 0.0789
+ 238 C 0.0723
+ 239 N 0.0660
+ 240 S 0.1322
+ 241 S 0.1532
+ 242 C 0.1060
+ 243 M 0.1018
+ 244 G 0.1060
+ 245 G 0.1150
+ 246 M 0.0789
+ 247 N 0.1266
+ 248 R 0.0965
+ 249 R 0.1732
+ 250 P 0.1766
+ 251 I 0.1766
+ 252 L 0.1805
+ 253 T 0.2820
+ 254 I 0.3096
+ 255 I 0.2602
+ 256 T 0.2080
+ 257 L 0.2333
+ 258 E 0.2385
+ 259 D 0.2385
+ 260 S 0.2432
+ 261 S 0.1602
+ 262 G 0.2122
+ 263 N 0.2385
+ 264 L 0.2333
+ 265 L 0.2558
+ 266 G 0.2432
+ 267 R 0.2292
+ 268 N 0.2209
+ 269 S 0.2483
+ 270 F 0.2531
+ 271 E 0.2432
+ 272 V 0.2432
+ 273 R 0.2432
+ 274 V 0.2432
+ 275 C 0.3053
+ 276 A 0.3630
+ 277 C 0.3578
+ 278 P 0.3630
+ 279 G 0.3668
+ 280 R 0.3263
+ 281 D 0.3992
+ 282 R 0.4037
+ 283 R 0.4556
+ 284 T 0.4703
+ 285 E 0.5173
+ 286 E 0.6219
+ 287 E 0.6412
+ 288 N 0.7275
+ 289 L 0.6984
+ 290 R 0.6756
+ 291 K 0.7079
+ 292 K 0.7192
+ 293 G 0.7342
+ 294 E 0.7458
+ 295 P 0.7501
+ 296 H 0.7540
+ 297 H 0.7605
+ 298 E 0.7605
+ 299 L 0.7342
+ 300 P 0.7912
+ 301 P 0.7951
+ 302 G 0.8036
+ 303 S 0.8074
+ 304 T 0.8074
+ 305 K 0.8118
+ 306 R 0.7951
+ 307 A 0.8118
+ 308 L 0.8242
+ 309 P 0.8488
+ 310 N 0.8650
+ 311 N 0.8488
+ 312 T 0.8311
+ 313 S 0.8424
+ 314 S 0.7912
+ 315 S 0.7951
+ 316 P 0.8001
+ 317 Q 0.8001
+ 318 P 0.7458
+ 319 K 0.7192
+ 320 K 0.6984
+ 321 K 0.6412
+ 322 P 0.6516
+ 323 L 0.5900
+ 324 D 0.5802
+ 325 G 0.5802
+ 326 E 0.5762
+ 327 Y 0.5623
+ 328 F 0.5374
+ 329 T 0.4556
+ 330 L 0.4556
+ 331 Q 0.4333
+ 332 I 0.3762
+ 333 R 0.3456
+ 334 G 0.4037
+ 335 R 0.3311
+ 336 E 0.3263
+ 337 R 0.3311
+ 338 F 0.3717
+ 339 E 0.3762
+ 340 M 0.3717
+ 341 F 0.3668
+ 342 R 0.3491
+ 343 E 0.4203
+ 344 L 0.4037
+ 345 N 0.4149
+ 346 E 0.4037
+ 347 A 0.3992
+ 348 L 0.4078
+ 349 E 0.4651
+ 350 L 0.4967
+ 351 K 0.5229
+ 352 D 0.5802
+ 353 A 0.5802
+ 354 Q 0.5846
+ 355 A 0.6293
+ 356 G 0.6412
+ 357 K 0.6374
+ 358 E 0.6604
+ 359 P 0.7317
+ 360 G 0.7034
+ 361 G 0.7573
+ 362 S 0.7573
+ 363 R 0.7573
+ 364 A 0.7772
+ 365 H 0.7605
+ 366 S 0.8036
+ 367 S 0.7951
+ 368 H 0.7817
+ 369 L 0.7869
+ 370 K 0.7724
+ 371 S 0.7869
+ 372 K 0.7869
+ 373 K 0.7951
+ 374 G 0.7644
+ 375 Q 0.7912
+ 376 S 0.7275
+ 377 T 0.7342
+ 378 S 0.7275
+ 379 R 0.6984
+ 380 H 0.7342
+ 381 K 0.7605
+ 382 K 0.7418
+ 383 L 0.7418
+ 384 M 0.7275
+ 385 F 0.7573
+ 386 K 0.7724
+ 387 T 0.8118
+ 388 E 0.8521
+ 389 G 0.8823
+ 390 P 0.8984
+ 391 D 0.9119
+ 392 S 0.9316
+ 393 D 0.9512
+# P53_HUMAN
+ 1 M 0.9854
+ 2 E 0.9883
+ 3 E 0.9711
+ 4 P 0.9677
+ 5 Q 0.9725
+ 6 S 0.9777
+ 7 D 0.9777
+ 8 P 0.9396
+ 9 S 0.9362
+ 10 V 0.9503
+ 11 E 0.9211
+ 12 P 0.8741
+ 13 P 0.8421
+ 14 L 0.7547
+ 15 S 0.6620
+ 16 Q 0.6576
+ 17 E 0.6906
+ 18 T 0.6620
+ 19 F 0.6427
+ 20 S 0.5807
+ 21 D 0.5707
+ 22 L 0.5382
+ 23 W 0.5342
+ 24 K 0.4476
+ 25 L 0.5296
+ 26 L 0.5254
+ 27 P 0.5211
+ 28 E 0.4725
+ 29 N 0.4330
+ 30 N 0.5533
+ 31 V 0.5854
+ 32 L 0.4864
+ 33 S 0.5139
+ 34 P 0.5533
+ 35 L 0.5577
+ 36 P 0.6576
+ 37 S 0.7547
+ 38 Q 0.7595
+ 39 A 0.6322
+ 40 M 0.6531
+ 41 D 0.6576
+ 42 D 0.6043
+ 43 L 0.5533
+ 44 M 0.5665
+ 45 L 0.5620
+ 46 S 0.6755
+ 47 P 0.6712
+ 48 D 0.6906
+ 49 D 0.6906
+ 50 I 0.7459
+ 51 E 0.8013
+ 52 Q 0.7505
+ 53 W 0.7459
+ 54 F 0.8050
+ 55 T 0.8013
+ 56 E 0.8792
+ 57 D 0.8966
+ 58 P 0.8655
+ 59 G 0.8198
+ 60 P 0.8198
+ 61 D 0.9013
+ 62 E 0.8421
+ 63 A 0.8013
+ 64 P 0.9013
+ 65 R 0.9415
+ 66 M 0.9488
+ 67 P 0.9269
+ 68 E 0.9013
+ 69 A 0.9013
+ 70 A 0.8991
+ 71 P 0.8991
+ 72 P 0.8681
+ 73 V 0.8313
+ 74 A 0.8713
+ 75 P 0.8313
+ 76 A 0.8565
+ 77 P 0.8655
+ 78 A 0.8655
+ 79 A 0.8462
+ 80 P 0.7718
+ 81 T 0.8162
+ 82 P 0.7250
+ 83 A 0.6948
+ 84 A 0.7547
+ 85 P 0.7718
+ 86 A 0.6851
+ 87 P 0.7369
+ 88 A 0.7080
+ 89 P 0.7505
+ 90 S 0.7672
+ 91 W 0.7459
+ 92 P 0.6269
+ 93 L 0.6183
+ 94 S 0.6531
+ 95 S 0.6712
+ 96 S 0.5296
+ 97 V 0.5577
+ 98 P 0.4292
+ 99 S 0.4476
+ 100 Q 0.3667
+ 101 K 0.3740
+ 102 T 0.3704
+ 103 Y 0.2884
+ 104 Q 0.3392
+ 105 G 0.3392
+ 106 S 0.3460
+ 107 Y 0.3529
+ 108 G 0.3807
+ 109 F 0.3566
+ 110 R 0.3566
+ 111 L 0.2884
+ 112 G 0.2988
+ 113 F 0.2064
+ 114 L 0.2988
+ 115 H 0.2002
+ 116 S 0.1942
+ 117 G 0.2129
+ 118 T 0.2817
+ 119 A 0.2164
+ 120 K 0.3182
+ 121 S 0.3149
+ 122 V 0.3460
+ 123 T 0.2503
+ 124 C 0.2470
+ 125 T 0.3215
+ 126 Y 0.2645
+ 127 S 0.2470
+ 128 P 0.2364
+ 129 A 0.2364
+ 130 L 0.1643
+ 131 N 0.1823
+ 132 K 0.1449
+ 133 M 0.2002
+ 134 F 0.1476
+ 135 C 0.1476
+ 136 Q 0.1115
+ 137 L 0.1881
+ 138 A 0.1881
+ 139 K 0.1731
+ 140 T 0.2034
+ 141 C 0.2817
+ 142 P 0.2884
+ 143 V 0.2951
+ 144 Q 0.3286
+ 145 L 0.4220
+ 146 W 0.4685
+ 147 V 0.4582
+ 148 D 0.4979
+ 149 S 0.4864
+ 150 T 0.4685
+ 151 P 0.3948
+ 152 P 0.4119
+ 153 P 0.3910
+ 154 G 0.4507
+ 155 T 0.4292
+ 156 R 0.5017
+ 157 V 0.6089
+ 158 R 0.6269
+ 159 A 0.6089
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git://source.jalview.org / jabaws.git / commitdiff