Fix copyright header

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@2612 e3abac25-378b-4346-85de-24260fe3988d

diff --git a/runner/compbio/pipeline/_jpred/BlastBlastComparator.java b/runner/compbio/pipeline/_jpred/BlastBlastComparator.java
index a85c17b..655dceb 100644 (file)
--- a/runner/compbio/pipeline/_jpred/BlastBlastComparator.java
+++ b/runner/compbio/pipeline/_jpred/BlastBlastComparator.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/pipeline/_jpred/BlastHmmerComparator.java b/runner/compbio/pipeline/_jpred/BlastHmmerComparator.java
index 21dec65..fbd04d9 100644 (file)
--- a/runner/compbio/pipeline/_jpred/BlastHmmerComparator.java
+++ b/runner/compbio/pipeline/_jpred/BlastHmmerComparator.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/pipeline/_jpred/BlastParser.java b/runner/compbio/pipeline/_jpred/BlastParser.java
index 7039588..7ed0d50 100644 (file)
--- a/runner/compbio/pipeline/_jpred/BlastParser.java
+++ b/runner/compbio/pipeline/_jpred/BlastParser.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/pipeline/_jpred/Hit.java b/runner/compbio/pipeline/_jpred/Hit.java
index c8351d9..6c60c97 100644 (file)
--- a/runner/compbio/pipeline/_jpred/Hit.java
+++ b/runner/compbio/pipeline/_jpred/Hit.java
@@ -1,5 +1,19 @@
-/**\r
+/* Copyright (c) 2009 Peter Troshin\r
+ *  \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
+ *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
+ *  Apache License version 2 as published by the Apache Software Foundation\r
+ * \r
+ *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
+ *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
+ *  License for more details.\r
+ * \r
+ *  A copy of the license is in apache_license.txt. It is also available here:\r
+ * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
+ * \r
+ * Any republication or derived work distributed in source code form\r
+ * must include this copyright and license notice.\r
  */\r
 package compbio.pipeline._jpred;\r
 \r

diff --git a/runner/compbio/pipeline/_jpred/JackHmmerHitParser.java b/runner/compbio/pipeline/_jpred/JackHmmerHitParser.java
index fb91920..54bfa09 100644 (file)
--- a/runner/compbio/pipeline/_jpred/JackHmmerHitParser.java
+++ b/runner/compbio/pipeline/_jpred/JackHmmerHitParser.java
@@ -1,3 +1,20 @@
+/* Copyright (c) 2009 Peter Troshin\r
+ *  \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
+ * \r
+ *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
+ *  Apache License version 2 as published by the Apache Software Foundation\r
+ * \r
+ *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
+ *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
+ *  License for more details.\r
+ * \r
+ *  A copy of the license is in apache_license.txt. It is also available here:\r
+ * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
+ * \r
+ * Any republication or derived work distributed in source code form\r
+ * must include this copyright and license notice.\r
+ */\r
 package compbio.pipeline._jpred;\r
 \r
 import java.io.BufferedReader;\r

diff --git a/runner/compbio/pipeline/_jpred/Jpred4.java b/runner/compbio/pipeline/_jpred/Jpred4.java
index d6823e0..e14fddf 100644 (file)
--- a/runner/compbio/pipeline/_jpred/Jpred4.java
+++ b/runner/compbio/pipeline/_jpred/Jpred4.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/pipeline/_jpred/PScore.java b/runner/compbio/pipeline/_jpred/PScore.java
index 3b14722..1bd6200 100644 (file)
--- a/runner/compbio/pipeline/_jpred/PScore.java
+++ b/runner/compbio/pipeline/_jpred/PScore.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/pipeline/_jpred/Pairwise.java b/runner/compbio/pipeline/_jpred/Pairwise.java
index c3d314c..13c765d 100644 (file)
--- a/runner/compbio/pipeline/_jpred/Pairwise.java
+++ b/runner/compbio/pipeline/_jpred/Pairwise.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r

diff --git a/runner/compbio/runner/disorder/RonnWrapper.java b/runner/compbio/runner/disorder/RonnWrapper.java
index a45601a..0bd621e 100644 (file)
--- a/runner/compbio/runner/disorder/RonnWrapper.java
+++ b/runner/compbio/runner/disorder/RonnWrapper.java
@@ -1,6 +1,6 @@
 /* Copyright (c) 2009 Peter Troshin\r
  *  \r
- *  Jalview Web Services @version: 2.0     \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
  * \r
  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
  *  Apache License version 2 as published by the Apache Software Foundation\r