Add untracked dir

diff --git a/WEB-INF/classes/log4j.properties b/WEB-INF/classes/log4j.properties
new file mode 100644 (file)
index 0000000..cd2a406
--- /dev/null
+++ b/WEB-INF/classes/log4j.properties
@@ -0,0 +1,77 @@
+\r
+## CHANGE THIS (The root directory where to store all the log files)  \r
+#logDir = .\r
+\r
+## Uncomment to enable JWS2 activity logging to standard out (to the console if available)\r
+## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html \r
+## Valid log levels are:\r
+## TRACE - log everything from below including very detailed messages (useful for debugging only)\r
+## DEBUG - log everything from below including some minor events (useful for debugging only)\r
+## INFO - log everything from below including some information messages\r
+## WARN - log error and warnings\r
+## ERROR - log errors and fatal events only \r
+## FATAL - log fatal events only\r
+\r
+# To see debug messages in TldLocationsCache, uncomment the following line:\r
+#org.apache.jasper.compiler.TldLocationsCache.level = FINE\r
+org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE\r
+\r
+## Uncomment this if you would like the system to log messages into stdout\r
+#log4j.rootLogger=TRACE, rootfile\r
+#log4j.appender.rootfile=org.apache.log4j.RollingFileAppender\r
+#log4j.appender.rootfile.File=JABAWSLogFilename.log\r
+#log4j.appender.rootfile.Target=System.out\r
+#log4j.appender.rootfile.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n\r
+\r
+## Uncomment to enable JWS2 activity logging to the file\r
+#log4j.logger.compbio=TRACE, ACTIVITY\r
+#log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender\r
+################log4j.appender.ACTIVITY.File=${logDir}/activity.log\r
+#log4j.appender.ACTIVITY.File=${catalina.base}/logs/JABAWSLogFilename.log\r
+#log4j.appender.ACTIVITY.MaxFileSize=10MB\r
+#log4j.appender.ACTIVITY.MaxBackupIndex=10000\r
+#log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n\r
+\r
+## Uncomment for separate local engine execution log (debugging only)\r
+#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C\r
+#log4j.appender.C=org.apache.log4j.FileAppender\r
+#log4j.appender.C.File=LocalExecutorService.log\r
+#log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.C.layout.ConversionPattern=%m%n\r
+\r
+##################################################################################################################################\r
+# log4j.properties from runner/\r
+\r
+#log4j.appender.stdout=org.apache.log4j.ConsoleAppender\r
+#log4j.appender.stdout.Target=System.out\r
+#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.stdout.layout.ConversionPattern=%m%n\r
+#log4j.rootLogger=info, stdout\r
+\r
+log4j.rootLogger=ERROR, R\r
+log4j.appender.R=org.apache.log4j.FileAppender\r
+log4j.appender.R.File=${catalina.base}/logs/JABAWSErrorFile.log\r
+log4j.appender.R.layout=org.apache.log4j.PatternLayout\r
+log4j.appender.R.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
+\r
+# %d{ABSOLUTE} %5p %c{1}:%L -\r
+log4j.logger.compbio=WARN, B\r
+log4j.appender.B=org.apache.log4j.FileAppender\r
+log4j.appender.B.File=${catalina.base}/logs/engine.log\r
+log4j.appender.B.layout=org.apache.log4j.PatternLayout\r
+log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
+\r
+# %d{ABSOLUTE} %5p %c{1}:%L -\r
+#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C\r
+#log4j.appender.C=org.apache.log4j.FileAppender\r
+#log4j.appender.C.File=LocalExecutorService.log\r
+#log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.C.layout.ConversionPattern=%m%n\r
+# %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
+\r
+#log4j.logger.RunnerLogger=ERROR, D\r
+#log4j.appender.D=org.apache.log4j.ConsoleAppender \r
+#log4j.appender.D.layout=org.apache.log4j.PatternLayout\r
+#log4j.appender.D.layout.ConversionPattern=%r [%t] %p %c %x - %m%n\r