in progress
authorcmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Fri, 15 Nov 2013 20:17:54 +0000 (20:17 +0000)
committercmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Fri, 15 Nov 2013 20:17:54 +0000 (20:17 +0000)
forester/test_data/spec_test_0.xml [new file with mode: 0644]
forester/test_data/spec_test_1.xml [new file with mode: 0644]

diff --git a/forester/test_data/spec_test_0.xml b/forester/test_data/spec_test_0.xml
new file mode 100644 (file)
index 0000000..5fbaa34
--- /dev/null
@@ -0,0 +1,78 @@
+<?xml version="1.0" encoding="UTF-8"?>\r
+<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
+<phylogeny rooted="true" rerootable="true">\r
+  <clade>\r
+    <clade>\r
+      <clade>\r
+        <clade>\r
+          <clade>\r
+            <clade>\r
+              <clade>\r
+                <taxonomy>\r
+                  <code>HUMAN</code>\r
+                </taxonomy>\r
+              </clade>\r
+              <clade>\r
+                <taxonomy>\r
+                  <code>RAT</code>\r
+                </taxonomy>\r
+              </clade>\r
+            </clade>\r
+            <clade>\r
+              <clade>\r
+                <taxonomy>\r
+                  <code>DROME</code>\r
+                </taxonomy>\r
+              </clade>\r
+              <clade>\r
+                <taxonomy>\r
+                  <code>CAEEL</code>\r
+                </taxonomy>\r
+              </clade>\r
+            </clade>\r
+          </clade>\r
+          <clade>\r
+            <taxonomy>\r
+              <code>NEMVE</code>\r
+            </taxonomy>\r
+          </clade>\r
+        </clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>YEAST</code>\r
+          </taxonomy>\r
+        </clade>\r
+      </clade>\r
+      <clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>SULSO</code>\r
+          </taxonomy>\r
+        </clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>PYRFU</code>\r
+          </taxonomy>\r
+        </clade>\r
+      </clade>\r
+    </clade>\r
+    <clade>\r
+      <clade>\r
+        <taxonomy>\r
+          <code>ECOLI</code>\r
+        </taxonomy>\r
+      </clade>\r
+      <clade>\r
+        <taxonomy>\r
+          <code>BACSU</code>\r
+        </taxonomy>\r
+      </clade>\r
+      <clade>\r
+        <taxonomy>\r
+          <code>VIBCH</code>\r
+        </taxonomy>\r
+      </clade>\r
+    </clade>\r
+  </clade>\r
+</phylogeny>\r
+</phyloxml>
\ No newline at end of file
diff --git a/forester/test_data/spec_test_1.xml b/forester/test_data/spec_test_1.xml
new file mode 100644 (file)
index 0000000..fa13217
--- /dev/null
@@ -0,0 +1,100 @@
+<?xml version="1.0" encoding="UTF-8"?>\r
+<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
+<phylogeny rooted="true" rerootable="true">\r
+  <name>[4]</name>\r
+  <clade>\r
+    <clade>\r
+      <clade>\r
+        <clade>\r
+          <clade>\r
+            <clade>\r
+              <clade>\r
+                <clade>\r
+                  <taxonomy>\r
+                    <code>HUMAN</code>\r
+                  </taxonomy>\r
+                </clade>\r
+                <clade>\r
+                  <taxonomy>\r
+                    <code>RAT</code>\r
+                  </taxonomy>\r
+                </clade>\r
+              </clade>\r
+              <clade>\r
+                <clade>\r
+                  <taxonomy>\r
+                    <code>CAEEL</code>\r
+                  </taxonomy>\r
+                </clade>\r
+                <clade>\r
+                  <taxonomy>\r
+                    <code>DROME</code>\r
+                  </taxonomy>\r
+                </clade>\r
+              </clade>\r
+            </clade>\r
+            <clade>\r
+              <taxonomy>\r
+                <code>NEMVE</code>\r
+              </taxonomy>\r
+            </clade>\r
+          </clade>\r
+          <clade>\r
+            <taxonomy>\r
+              <code>YEAST</code>\r
+            </taxonomy>\r
+          </clade>\r
+        </clade>\r
+        <clade>\r
+          <clade>\r
+            <taxonomy>\r
+              <code>PYRFU</code>\r
+            </taxonomy>\r
+          </clade>\r
+          <clade>\r
+            <taxonomy>\r
+              <code>SULSO</code>\r
+            </taxonomy>\r
+          </clade>\r
+        </clade>\r
+      </clade>\r
+      <clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>BACSU</code>\r
+          </taxonomy>\r
+        </clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>ECOLI</code>\r
+          </taxonomy>\r
+        </clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <code>VIBCH</code>\r
+          </taxonomy>\r
+        </clade>\r
+      </clade>\r
+    </clade>\r
+    <clade>\r
+      <clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <scientific_name>Bovine adenovirus D</scientific_name>\r
+          </taxonomy>\r
+        </clade>\r
+        <clade>\r
+          <taxonomy>\r
+            <scientific_name>Ovine adenovirus B</scientific_name>\r
+          </taxonomy>\r
+        </clade>\r
+      </clade>\r
+      <clade>\r
+        <taxonomy>\r
+          <scientific_name>Canna yellow mottle virus</scientific_name>\r
+        </taxonomy>\r
+      </clade>\r
+    </clade>\r
+  </clade>\r
+</phylogeny>\r
+</phyloxml>
\ No newline at end of file