rename

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4317 e3abac25-378b-4346-85de-24260fe3988d

diff --git a/binaries/linuxAMD64/clustalw2 b/binaries/linux_x64/clustalw2
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diff --git a/binaries/linuxAMD64/fasta34/make_osx_univ.sh b/binaries/linux_x64/fasta34/make_osx_univ.sh
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diff --git a/binaries/linuxAMD64/fasta34/smith_waterman_sse2.h b/binaries/linux_x64/fasta34/smith_waterman_sse2.h
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diff --git a/binaries/linuxAMD64/fasta34/tfastm34 b/binaries/linux_x64/fasta34/tfastm34
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diff --git a/binaries/linuxAMD64/mafft/contrafoldwrap b/binaries/linux_x64/mafft/contrafoldwrap
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diff --git a/binaries/linuxIA32/clustalw2 b/binaries/linux_x86/clustalw2
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diff --git a/binaries/linuxIA32/fasta34/fasty34_t b/binaries/linux_x86/fasta34/fasty34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/fasty34_t
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diff --git a/binaries/linuxIA32/fasta34/make_osx_univ.sh b/binaries/linux_x86/fasta34/make_osx_univ.sh
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/nr_to_sql.pl b/binaries/linux_x86/fasta34/nr_to_sql.pl
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/prfx34 b/binaries/linux_x86/fasta34/prfx34
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diff --git a/binaries/linuxIA32/fasta34/prfx34_t b/binaries/linux_x86/fasta34/prfx34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/prfx34_t
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diff --git a/binaries/linuxIA32/fasta34/prss34 b/binaries/linux_x86/fasta34/prss34
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/prss34_t b/binaries/linux_x86/fasta34/prss34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/prss34_t
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diff --git a/binaries/linuxIA32/fasta34/smith_waterman_sse2.h b/binaries/linux_x86/fasta34/smith_waterman_sse2.h
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/ssearch34 b/binaries/linux_x86/fasta34/ssearch34
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/ssearch34_t b/binaries/linux_x86/fasta34/ssearch34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/ssearch34_t
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diff --git a/binaries/linuxIA32/fasta34/test.sh b/binaries/linux_x86/fasta34/test.sh
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diff --git a/binaries/linuxIA32/fasta34/test2.bat b/binaries/linux_x86/fasta34/test2.bat
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diff --git a/binaries/linuxIA32/fasta34/test_osx.sh b/binaries/linux_x86/fasta34/test_osx.sh
similarity index 100%
rename from binaries/linuxIA32/fasta34/test_osx.sh
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diff --git a/binaries/linuxIA32/fasta34/test_s.sh b/binaries/linux_x86/fasta34/test_s.sh
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diff --git a/binaries/linuxIA32/fasta34/test_z.sh b/binaries/linux_x86/fasta34/test_z.sh
similarity index 100%
rename from binaries/linuxIA32/fasta34/test_z.sh
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diff --git a/binaries/linuxIA32/fasta34/tfasta34 b/binaries/linux_x86/fasta34/tfasta34
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfasta34
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diff --git a/binaries/linuxIA32/fasta34/tfasta34_t b/binaries/linux_x86/fasta34/tfasta34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfasta34_t
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diff --git a/binaries/linuxIA32/fasta34/tfastf34 b/binaries/linux_x86/fasta34/tfastf34
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfastf34
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diff --git a/binaries/linuxIA32/fasta34/tfastf34_t b/binaries/linux_x86/fasta34/tfastf34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfastf34_t
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diff --git a/binaries/linuxIA32/fasta34/tfastm34 b/binaries/linux_x86/fasta34/tfastm34
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfastm34
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diff --git a/binaries/linuxIA32/fasta34/tfasts34 b/binaries/linux_x86/fasta34/tfasts34
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/tfasts34_t b/binaries/linux_x86/fasta34/tfasts34_t
similarity index 100%
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diff --git a/binaries/linuxIA32/fasta34/tfastx34 b/binaries/linux_x86/fasta34/tfastx34
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfastx34
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diff --git a/binaries/linuxIA32/fasta34/tfastx34_t b/binaries/linux_x86/fasta34/tfastx34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfastx34_t
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diff --git a/binaries/linuxIA32/fasta34/tfasty34 b/binaries/linux_x86/fasta34/tfasty34
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfasty34
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diff --git a/binaries/linuxIA32/fasta34/tfasty34_t b/binaries/linux_x86/fasta34/tfasty34_t
similarity index 100%
rename from binaries/linuxIA32/fasta34/tfasty34_t
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diff --git a/binaries/linuxIA32/mafft/contrafoldwrap b/binaries/linux_x86/mafft/contrafoldwrap
similarity index 100%
rename from binaries/linuxIA32/mafft/contrafoldwrap
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diff --git a/binaries/linuxIA32/mafft/countlen b/binaries/linux_x86/mafft/countlen
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diff --git a/binaries/linuxIA32/mafft/disttbfast b/binaries/linux_x86/mafft/disttbfast
similarity index 100%
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diff --git a/binaries/linuxIA32/mafft/dndblast b/binaries/linux_x86/mafft/dndblast
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diff --git a/binaries/linuxIA32/mafft/dndfast7 b/binaries/linux_x86/mafft/dndfast7
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diff --git a/binaries/linuxIA32/mafft/dndpre b/binaries/linux_x86/mafft/dndpre
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diff --git a/binaries/linuxIA32/mafft/dndpre2 b/binaries/linux_x86/mafft/dndpre2
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diff --git a/binaries/linuxIA32/mafft/dvtditr b/binaries/linux_x86/mafft/dvtditr
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diff --git a/binaries/linuxIA32/mafft/f2cl b/binaries/linux_x86/mafft/f2cl
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diff --git a/binaries/linuxIA32/mafft/getlag b/binaries/linux_x86/mafft/getlag
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diff --git a/binaries/linuxIA32/mafft/mafft b/binaries/linux_x86/mafft/mafft
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diff --git a/binaries/linuxIA32/mafft/mafft-distance b/binaries/linux_x86/mafft/mafft-distance
similarity index 100%
rename from binaries/linuxIA32/mafft/mafft-distance
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diff --git a/binaries/linuxIA32/mafft/mafft-homologs.1 b/binaries/linux_x86/mafft/mafft-homologs.1
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diff --git a/binaries/linuxIA32/mafft/mafft-homologs.rb b/binaries/linux_x86/mafft/mafft-homologs.rb
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diff --git a/binaries/linuxIA32/mafft/mafft-profile b/binaries/linux_x86/mafft/mafft-profile
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diff --git a/binaries/linuxIA32/mafft/mafft.1 b/binaries/linux_x86/mafft/mafft.1
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diff --git a/binaries/linuxIA32/mafft/mccaskillwrap b/binaries/linux_x86/mafft/mccaskillwrap
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rename from binaries/linuxIA32/mafft/mccaskillwrap
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diff --git a/binaries/linuxIA32/mafft/multi2hat3s b/binaries/linux_x86/mafft/multi2hat3s
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rename from binaries/linuxIA32/mafft/multi2hat3s
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diff --git a/binaries/linuxIA32/mafft/mxscarnamod b/binaries/linux_x86/mafft/mxscarnamod
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diff --git a/binaries/linuxIA32/mafft/pair2hat3s b/binaries/linux_x86/mafft/pair2hat3s
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rename from binaries/linuxIA32/mafft/pair2hat3s
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diff --git a/binaries/linuxIA32/mafft/pairash b/binaries/linux_x86/mafft/pairash
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diff --git a/binaries/linuxIA32/mafft/pairlocalalign b/binaries/linux_x86/mafft/pairlocalalign
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rename from binaries/linuxIA32/mafft/pairlocalalign
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diff --git a/binaries/linuxIA32/mafft/regtable2seq b/binaries/linux_x86/mafft/regtable2seq
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diff --git a/binaries/linuxIA32/mafft/replaceu b/binaries/linux_x86/mafft/replaceu
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diff --git a/binaries/linuxIA32/mafft/restoreu b/binaries/linux_x86/mafft/restoreu
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diff --git a/binaries/linuxIA32/mafft/rnatest b/binaries/linux_x86/mafft/rnatest
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diff --git a/binaries/linuxIA32/mafft/score b/binaries/linux_x86/mafft/score
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rename from binaries/linuxIA32/mafft/score
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diff --git a/binaries/linuxIA32/mafft/seq2regtable b/binaries/linux_x86/mafft/seq2regtable
similarity index 100%
rename from binaries/linuxIA32/mafft/seq2regtable
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diff --git a/binaries/linuxIA32/mafft/setcore b/binaries/linux_x86/mafft/setcore
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diff --git a/binaries/linuxIA32/mafft/sextet5 b/binaries/linux_x86/mafft/sextet5
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diff --git a/binaries/linuxIA32/mafft/splittbfast b/binaries/linux_x86/mafft/splittbfast
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diff --git a/binaries/linuxIA32/mafft/tbfast b/binaries/linux_x86/mafft/tbfast
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diff --git a/binaries/linuxIA32/muscle b/binaries/linux_x86/muscle
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diff --git a/binaries/linuxIA32/probcons b/binaries/linux_x86/probcons
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diff --git a/binaries/linuxIA32/t_coffee b/binaries/linux_x86/t_coffee
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