Adding XML executable description for IUPred

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4266 e3abac25-378b-4346-85de-24260fe3988d

diff --git a/conf/settings/IUPredLimits.xml b/conf/settings/IUPredLimits.xml
new file mode 100644 (file)
index 0000000..8d3a09f
--- /dev/null
+++ b/conf/settings/IUPredLimits.xml
@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<limits>\r
+ <runnerClassName>compbio.runner.disorder.IUPred</runnerClassName>\r
+       <limit isDefault="true">\r
+               <seqNumber>5000</seqNumber>\r
+               <seqLength>1000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset># LocalEngineExecutionLimit #</preset>\r
+               <seqNumber>200</seqNumber>\r
+               <seqLength>400</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset>Quick conservation</preset>\r
+               <seqNumber>10000</seqNumber>\r
+               <seqLength>10000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset>Slow conservation</preset>\r
+               <seqNumber>2000</seqNumber>\r
+               <seqLength>1000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset>Complete conservation</preset>\r
+               <seqNumber>2000</seqNumber>\r
+               <seqLength>1000</seqLength>\r
+       </limit>\r
+</limits>\r

diff --git a/conf/settings/IUPredParameters.xml b/conf/settings/IUPredParameters.xml
new file mode 100644 (file)
index 0000000..1846cad
--- /dev/null
+++ b/conf/settings/IUPredParameters.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<runnerConfig>\r
+       <runnerClassName>compbio.runner.disorder.Disembl</runnerClassName>\r
+       <options isRequired="true">\r
+        <name>Disorder type</name>\r
+        <description></description>\r
+        <optionNames>short</optionNames>\r
+        <optionNames>long</optionNames>\r
+        <optionNames>glob</optionNames>\r
+        <furtherDetails>prog_docs/iupred.txt</furtherDetails>\r
+        <defaultValue>long</defaultValue>\r
+    </options>\r
+</runnerConfig>\r

diff --git a/conf/settings/IUPredPresets.xml b/conf/settings/IUPredPresets.xml
new file mode 100644 (file)
index 0000000..8cf8f44
--- /dev/null
+++ b/conf/settings/IUPredPresets.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<presets>\r
+ <runnerClassName>compbio.runner.disorder.IUPred</runnerClassName>\r
+       <preset>\r
+               <name>Complete Disorder</name>\r
+               <description>Short, Long disorder and globular domains</description>\r
+               <optlist>\r
+                       <option>all</option>\r
+               </optlist>\r
+       </preset>\r
+</presets>\r
+\r
+\r
+\r
+ \r
+\r