config.putDisplayColors( TreeColorSet.BRANCH, new Color( 0, 0, 0 ) );
config.putDisplayColors( TreeColorSet.TAXONOMY, new Color( 0, 0, 0 ) );
config.setPhylogenyGraphicsType( Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR );
- AptxUtil.writePhylogenyToGraphicsFile( new File( "/home/czmasek/tol_117_TEST.xml" ),
- new File( "/home/czmasek/tol_117_TEST_.png" ),
+ AptxUtil.writePhylogenyToGraphicsFile( new File( "my_tree.xml" ),
+ new File( "my_tree_graphics.png" ),
1000,
1000,
GraphicsExportType.PNG,
config );
// If the tree 'phy' already exists, can also use this:
AptxUtil.writePhylogenyToGraphicsFile( phy,
- new File( "/home/czmasek/tol_117_TEST_.png" ),
+ new File( "out.png" ),
1000,
1000,
GraphicsExportType.PNG,