+++ /dev/null
-\r
-## CHANGE THIS (The root directory where to store all the log files) \r
-#logDir = .\r
-\r
-## Uncomment to enable JWS2 activity logging to standard out (to the console if available)\r
-## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html \r
-## Valid log levels are:\r
-## TRACE - log everything from below including very detailed messages (useful for debugging only)\r
-## DEBUG - log everything from below including some minor events (useful for debugging only)\r
-## INFO - log everything from below including some information messages\r
-## WARN - log error and warnings\r
-## ERROR - log errors and fatal events only \r
-## FATAL - log fatal events only\r
-\r
-## Uncomment this if you would like the system to log messages into stdout\r
-#log4j.rootLogger=TRACE, rootfile\r
-#log4j.appender.rootfile=org.apache.log4j.RollingFileAppender\r
-#log4j.appender.rootfile.File=JABAWSLogFilename.log\r
-#log4j.appender.rootfile.Target=System.out\r
-#log4j.appender.rootfile.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n\r
-\r
-## Uncomment to enable JWS2 activity logging to the file\r
-#log4j.logger.compbio=TRACE, ACTIVITY\r
-#log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender\r
-################log4j.appender.ACTIVITY.File=${logDir}/activity.log\r
-#log4j.appender.ACTIVITY.File=${catalina.base}/logs/JABAWSLogFilename.log\r
-#log4j.appender.ACTIVITY.MaxFileSize=10MB\r
-#log4j.appender.ACTIVITY.MaxBackupIndex=10000\r
-#log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n\r
-\r
-## Uncomment for separate local engine execution log (debugging only)\r
-#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C\r
-#log4j.appender.C=org.apache.log4j.FileAppender\r
-#log4j.appender.C.File=LocalExecutorService.log\r
-#log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.C.layout.ConversionPattern=%m%n\r
-\r
-##################################################################################################################################\r
-# log4j.properties from runner/\r
-\r
-#log4j.appender.stdout=org.apache.log4j.ConsoleAppender\r
-#log4j.appender.stdout.Target=System.out\r
-#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.stdout.layout.ConversionPattern=%m%n\r
-#log4j.rootLogger=info, stdout\r
-\r
-log4j.rootLogger=TRACE, rootfile\r
-log4j.appender.rootfile=org.apache.log4j.FileAppender\r
-log4j.appender.rootfile.File=${catalina.base}/logs/JABAWSLogFilename.log1\r
-log4j.appender.rootfile.Target=System.out\r
-log4j.appender.rootfile.layout=org.apache.log4j.PatternLayout\r
-log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n\r
-\r
-# %d{ABSOLUTE} %5p %c{1}:%L -\r
-log4j.logger.compbio=TRACE, B\r
-log4j.appender.B=org.apache.log4j.FileAppender\r
-#log4j.appender.B.File=engine.log\r
-log4j.appender.B.File=${catalina.base}/logs/engine.log\r
-log4j.appender.B.layout=org.apache.log4j.PatternLayout\r
-log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
-\r
-# %d{ABSOLUTE} %5p %c{1}:%L -\r
-#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C\r
-#log4j.appender.C=org.apache.log4j.FileAppender\r
-#log4j.appender.C.File=LocalExecutorService.log\r
-#log4j.appender.C.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.C.layout.ConversionPattern=%m%n\r
-# %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - \r
-\r
-#log4j.logger.RunnerLogger=ERROR, D\r
-#log4j.appender.D=org.apache.log4j.ConsoleAppender \r
-#log4j.appender.D.layout=org.apache.log4j.PatternLayout\r
-#log4j.appender.D.layout.ConversionPattern=%r [%t] %p %c %x - %m%n\r