--- /dev/null
+/**
+ * JPredWS.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public interface JPredWS extends java.rmi.Remote {
+ public java.lang.String predict(ext.vamsas.Sequence in0) throws java.rmi.RemoteException;
+ public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException;
+}
--- /dev/null
+/**
+ * JPredWSService.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public interface JPredWSService extends javax.xml.rpc.Service {
+ public java.lang.String getjpredAddress();
+
+ public ext.vamsas.JPredWS getjpred() throws javax.xml.rpc.ServiceException;
+
+ public ext.vamsas.JPredWS getjpred(java.net.URL portAddress) throws javax.xml.rpc.ServiceException;
+}
--- /dev/null
+/**
+ * JPredWSServiceLocator.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class JPredWSServiceLocator extends org.apache.axis.client.Service implements ext.vamsas.JPredWSService {
+
+ // Use to get a proxy class for jpred
+ private final java.lang.String jpred_address = "http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred";
+
+ public java.lang.String getjpredAddress() {
+ return jpred_address;
+ }
+
+ // The WSDD service name defaults to the port name.
+ private java.lang.String jpredWSDDServiceName = "jpred";
+
+ public java.lang.String getjpredWSDDServiceName() {
+ return jpredWSDDServiceName;
+ }
+
+ public void setjpredWSDDServiceName(java.lang.String name) {
+ jpredWSDDServiceName = name;
+ }
+
+ public ext.vamsas.JPredWS getjpred() throws javax.xml.rpc.ServiceException {
+ java.net.URL endpoint;
+ try {
+ endpoint = new java.net.URL(jpred_address);
+ }
+ catch (java.net.MalformedURLException e) {
+ throw new javax.xml.rpc.ServiceException(e);
+ }
+ return getjpred(endpoint);
+ }
+
+ public ext.vamsas.JPredWS getjpred(java.net.URL portAddress) throws javax.xml.rpc.ServiceException {
+ try {
+ ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(portAddress, this);
+ _stub.setPortName(getjpredWSDDServiceName());
+ return _stub;
+ }
+ catch (org.apache.axis.AxisFault e) {
+ return null;
+ }
+ }
+
+ /**
+ * For the given interface, get the stub implementation.
+ * If this service has no port for the given interface,
+ * then ServiceException is thrown.
+ */
+ public java.rmi.Remote getPort(Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+ try {
+ if (ext.vamsas.JPredWS.class.isAssignableFrom(serviceEndpointInterface)) {
+ ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(new java.net.URL(jpred_address), this);
+ _stub.setPortName(getjpredWSDDServiceName());
+ return _stub;
+ }
+ }
+ catch (java.lang.Throwable t) {
+ throw new javax.xml.rpc.ServiceException(t);
+ }
+ throw new javax.xml.rpc.ServiceException("There is no stub implementation for the interface: " + (serviceEndpointInterface == null ? "null" : serviceEndpointInterface.getName()));
+ }
+
+ /**
+ * For the given interface, get the stub implementation.
+ * If this service has no port for the given interface,
+ * then ServiceException is thrown.
+ */
+ public java.rmi.Remote getPort(javax.xml.namespace.QName portName, Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+ if (portName == null) {
+ return getPort(serviceEndpointInterface);
+ }
+ String inputPortName = portName.getLocalPart();
+ if ("jpred".equals(inputPortName)) {
+ return getjpred();
+ }
+ else {
+ java.rmi.Remote _stub = getPort(serviceEndpointInterface);
+ ((org.apache.axis.client.Stub) _stub).setPortName(portName);
+ return _stub;
+ }
+ }
+
+ public javax.xml.namespace.QName getServiceName() {
+ return new javax.xml.namespace.QName("vamsas", "JPredWSService");
+ }
+
+ private java.util.HashSet ports = null;
+
+ public java.util.Iterator getPorts() {
+ if (ports == null) {
+ ports = new java.util.HashSet();
+ ports.add(new javax.xml.namespace.QName("jpred"));
+ }
+ return ports.iterator();
+ }
+
+}
--- /dev/null
+/**
+ * JpredSoapBindingStub.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.JPredWS {
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ static org.apache.axis.description.OperationDesc [] _operations;
+
+ static {
+ _operations = new org.apache.axis.description.OperationDesc[2];
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("predict");
+ oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"), ext.vamsas.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictReturn"));
+ oper.setStyle(org.apache.axis.enum.Style.WRAPPED);
+ oper.setUse(org.apache.axis.enum.Use.LITERAL);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getpredict");
+ oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"));
+ oper.setReturnClass(ext.vamsas.Secstructpred.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getpredictReturn"));
+ oper.setStyle(org.apache.axis.enum.Style.WRAPPED);
+ oper.setUse(org.apache.axis.enum.Use.LITERAL);
+ _operations[1] = oper;
+
+ }
+
+ public JpredSoapBindingStub() throws org.apache.axis.AxisFault {
+ this(null);
+ }
+
+ public JpredSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public JpredSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ if (service == null) {
+ super.service = new org.apache.axis.client.Service();
+ } else {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence");
+ cachedSerQNames.add(qName);
+ cls = ext.vamsas.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred");
+ cachedSerQNames.add(qName);
+ cls = ext.vamsas.Secstructpred.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ private org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
+ try {
+ org.apache.axis.client.Call _call =
+ (org.apache.axis.client.Call) super.service.createCall();
+ if (super.maintainSessionSet) {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null) {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null) {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null) {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null) {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null) {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements()) {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this) {
+ if (firstCall()) {
+ // must set encoding style before registering serializers
+ _call.setEncodingStyle(null);
+ for (int i = 0; i < cachedSerFactories.size(); ++i) {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName =
+ (javax.xml.namespace.QName) cachedSerQNames.get(i);
+ java.lang.Class sf = (java.lang.Class)
+ cachedSerFactories.get(i);
+ java.lang.Class df = (java.lang.Class)
+ cachedDeserFactories.get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ }
+ catch (java.lang.Throwable t) {
+ throw new org.apache.axis.AxisFault("Failure trying to get the Call object", t);
+ }
+ }
+
+ public java.lang.String predict(ext.vamsas.Sequence in0) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (ext.vamsas.Secstructpred) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.Secstructpred.class);
+ }
+ }
+ }
+
+}
--- /dev/null
+/**
+ * Secstructpred.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class Secstructpred implements java.io.Serializable {
+ private java.lang.String output;
+
+ public Secstructpred() {
+ }
+
+ public java.lang.String getOutput() {
+ return output;
+ }
+
+ public void setOutput(java.lang.String output) {
+ this.output = output;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Secstructpred)) return false;
+ Secstructpred other = (Secstructpred) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((this.output==null && other.getOutput()==null) ||
+ (this.output!=null &&
+ this.output.equals(other.getOutput())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getOutput() != null) {
+ _hashCode += getOutput().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Secstructpred.class);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("output");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "output"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(elemField);
+ }
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
--- /dev/null
+/**
+ * Sequence.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class Sequence implements java.io.Serializable {
+ private java.lang.String id;
+ private java.lang.String seq;
+
+ public Sequence() {
+ }
+
+ public java.lang.String getId() {
+ return id;
+ }
+
+ public void setId(java.lang.String id) {
+ this.id = id;
+ }
+
+ public java.lang.String getSeq() {
+ return seq;
+ }
+
+ public void setSeq(java.lang.String seq) {
+ this.seq = seq;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Sequence)) return false;
+ Sequence other = (Sequence) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((this.id==null && other.getId()==null) ||
+ (this.id!=null &&
+ this.id.equals(other.getId()))) &&
+ ((this.seq==null && other.getSeq()==null) ||
+ (this.seq!=null &&
+ this.seq.equals(other.getSeq())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getId() != null) {
+ _hashCode += getId().hashCode();
+ }
+ if (getSeq() != null) {
+ _hashCode += getSeq().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Sequence.class);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("id");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "id"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("seq");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "seq"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(elemField);
+ }
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
git://source.jalview.org / jalview.git / commitdiff