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+<%--<%@ page language="java" contentType="text/html; charset=ISO-8859-1" pageEncoding="ISO-8859-1"%>--%>
+
+<%@ taglib prefix="c" uri="http://java.sun.com/jsp/jstl/core" %>
+<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn" %>
+<%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt" %>
+<%@ taglib uri="http://displaytag.sf.net" prefix="dt" %>
+
+
+<c:import url="template_header.jsp" >
+ <c:param name="title">Download</c:param>
+</c:import>
+
+<div class="row">
+ <div class="col-md-12">
+ <div class="panel panel-default">
+ <div class="panel panel-heading">
+ <h1 class="panel-title">JABAWS Server Virtual Appliance (VA)</h1>
+ </div>
+ <div class="panel-body">
+ <p class="justify">
+ The JABAWS virtual appliance (VA) is a way of running a fully functional JABAWS instance
+ on your own computer. In order to use the VA, you have to install software from VMWare to run
+ the virtual machine. We recommend <a href="http://www.vmware.com/products/player">VMWare Player</a>
+ which is available for free for Windows and Linux users. Once the VA is running, you can
+ configure <a href="http://www.jalview.org/download.html">Jalview</a> to use your local
+ JABAWS VA with
+ <a href="http://www.compbio.dundee.ac.uk/jabaws/man_servervm.html#jalviewWithJaba">these instructions</a>.
+ </p>
+ <ul>
+ <li>JABAWS Virtual Appliance: <a href='/download/get?id=JABAWS210.pack.tar.gz'>download</a> (593Mb)</li>
+ <li>Additional Virtual disk with the <a href="http://www.uniprot.org/help/uniref">UniRef</a> database:
+ <a href='/download/get?id=JABAWS.2.1.0.uniref.real.vmdk.gz'>download</a> (2.3Gb)</li>
+ </ul>
+ <p class="justify">
+ Please check the JABAWS <a href="http://www.compbio.dundee.ac.uk/jabaws/man_servervm.html#whenvm">manual</a>
+ for further instructions.
+ </p>
+
+ <p class="justify">
+ Since the current version of Jpred requires a local copy of filtered (UniRef90) UniRef data
+ and the database is large (~5.6Gb), the JABAWS VA installation download is split into two
+ parts: the JABAWS server itself and an optional additional download that provides a virtual
+ disk containing the UniRef database for Jpred (<span style="color:#993333;font-style:bold;">Jpred
+ has been trained, optimized and tested with this UniRef database release. So, we strongly recommend
+ users not to use other UniRef installations!</span>). By default the VA has an additional
+ empty virtual disk inside of the VA and JpredWS is not available. To enable JpredWS, download
+ and unpack both
+ <a href='/download/get?id=JABAWS210.pack.tar.gz'>the VA</a> and
+ <a href='/download/get?id=JABAWS.2.1.0.uniref.real.vmdk.gz'>the disk file</a>,
+ and replace the empty disk in the VA download (called JABAWS.2.1.0.uniref.vmdk) with the disk from the
+ second download (JABAWS.2.1.0.uniref.real.vmdk). Here is a list of commands for Linux users:
+ <pre><code class="bash">tar xzvf JABAWS210.pack.tar.gz
+gunzip JABAWS.2.1.0.uniref.real.vmdk.gz
+mv JABAWS.2.1.0.uniref.real.vmdk JABAWS210.pack/JABAWS.2.1.0.uniref.vmdk</code></pre>
+ After that, launch the virtual machine and the JpredWS service should be operational.
+ <p>
+ </div>
+ </div>
+ </div>
+</div>
+<div class="row">
+ <div class="col-md-12">
+ <div class="panel panel-default">
+ <div class="panel panel-heading">
+ <h1 class="panel-title">JABAWS Server Web Application aRchive (WAR)</h1>
+ </div>
+ <div class="panel-body">
+ <p class="justify">
+ The JABAWS Server Web Application aRchive (WAR) version is a better way to run JABAWS if you want to deploy
+ JABAWS for many users, e.g. your laboratory, or if you are an experienced user and want to have more control
+ on JABAWS. You can also use this version for Mac and Linux computers if you do not want to use virtualization.
+ Finally, you can use this version on a computer cluster. <br/>
+ The server is provided as a self-contained <a href="http://en.wikipedia.org/wiki/WAR_(Sun_file_format)">Web
+ Application aRchive (WAR) </a> containing all necessary binaries. The WAR file can be deployed on any web
+ application server supporting the Java servlet specification (version 2.4 or above), i.e.
+ <a href="http://tomcat.apache.org/download-70.cgi">Tomcat 7.0</a>.
+ </p>
+ <ul>
+ <li>JABAWS WAR (includes source and precompiled Linux x86 and Windows binaries):
+ <a href="/download/get?id=jabaws.war">download</a> (88M) </li>
+ <li>Tar/gzipped UniRef90 database (for JpredWS):
+ <a href="/download/get?id=UNIREFdb.tar.gz">UNIREFdb.tar.gz</a> (2.3Gb)</li>
+ </ul>
+ <p class="justify">Installation notes:</p>
+ <ol>
+ <li>After a default installation on Linux, all JABAWS web services should run OK, except JpredWS.
+ This service requires installation of the UNIREF90 database on your computer.
+ <ul>
+ <li>Download the database (<a href="/download/get?id=UNIREFdb.tar.gz">UNIREFdb.tar.gz</a>)</li>
+ <li>Unpack the database and install it either in the default JABA data location (/data),
+ or in some other location (configured by the 'jpred.data.uniref.path' path entry in conf/Executable.properties).</li>
+ </ul>
+ </li>
+ <li>If you deploy JABAWS WAR on Windows, not all web services will be functional, and you will need
+ a properly configured compilation environment to build the JABA binaries from source. We recommend Windows
+ users download and use the JABAWS VA instead.</li>
+ </ol>
+
+ </div>
+ </div>
+ </div>
+</div>
+<div class="row">
+ <div class="col-md-12">
+ <div class="panel panel-default">
+ <div class="panel panel-heading">
+ <h1 class="panel-title">JABAWS Command Line Client</h1>
+ </div>
+ <div class="panel-body">
+ <p class="justify">
+ The command line client is an executable Java program for scripting
+ against JABA web services. It is also useful as an example of how to
+ access JABAWS services if you intend to use JABAWS in your own
+ program, with functions demonstrating how to discover command line
+ parameters and presets supported by a service, and how to run,
+ monitor and retrieve the results of a job.
+ <em>
+ Note: The client is used in <a href="http://www.jalview.org/">Jalview</a>
+ to autogenerate a graphical user interface for JABA services.
+ </em>
+ </p>
+ <ul>
+ <li>Command line client
+ <ul>
+ <li>jar file with binaries (with log4j):
+ <a href='/download/get?id=min-jabaws-client-2.1.0.jar'>download</a> (538 K)</li>
+ <li>jar file with binaries (without log4j):
+ <a href='/download/get?id=min-jabaws-client-nolog-2.1.0.jar'>download</a> (151 K)</li>
+ <li>source:
+ <a href='/download/get?id=jabaws-client-src-2.1.0.jar'>download</a> (152 K)</li>
+ </ul>
+ </li>
+ </ul>
+ <p class="justify">
+ The command line client displays help when executed without arguments,
+ more details is available from the jabaws client's manual pages.
+ </p>
+ </div>
+ </div>
+ </div>
+</div>
+<div class="row">
+ <div class="col-md-12">
+ <div class="panel panel-default">
+ <div class="panel panel-heading">
+ <h1 class="panel-title">Source Code</h1>
+ </div>
+ <div class="panel-body">
+ <p class="justify">
+ We welcome developers who wish to develop and implement new web services for JABAWS.
+ JABAWS is released under the Apache License, and its source can be downloaded below.
+ The latest versions of JABAWS' source can also be obtained from its Git repository
+ <br/>
+ The repository and code archive contains the complete <a href="http://www.eclipse.org">Eclipse</a> JABAWS project,
+ but Eclipse is not necessary to build it. Please examine the Ant build file (build.xml) to build
+ and test JABAWS from sources.
+ </p>
+ <ul>
+ <li>A complete Eclipse project package:
+ <a href='/download/get?id=jabaws-project-2.1.0.tar.gz'>download</a> (92M)</li>
+ <li>JABAWS source only package:
+ <a href='/download/get?id=jabaws-src-2.1.0.jar'>download</a> (372K)</li>
+ <li>Binaries of programs witin JABAWS only:
+ <a href='/download/get?id=binaries.zip'>download</a> (60M)</li>
+ <li>JABAWS Git repository
+ <a href='http://source.jalview.org/gitweb/?p=jabaws.git;a=summary'>http://source.jalview.org/git/jabaws.git</a></li>
+ </ul>
+ <p class="justify">
+ To request a JABAWS developer account please send us an email to the
+ <a href="http://www.jalview.org/mailman/listinfo/jabaws-discuss">jabaws-discuss</a> mailing list.
+ </p>
+ </div>
+ </div>
+ </div>
+</div>
+<div class="row">
+ <div class="col-md-12">
+ <div class="panel panel-default">
+ <div class="panel panel-heading">
+ <h1 class="panel-title">Current Version</h1>
+ </div>
+ <div class="panel-body">
+ <p class="justify">
+ The current JABAWS version is 2.2.0 released on XX February 2017.
+ </p>
+ </div>
+ </div>
+ </div>
+</div>
+
+<jsp:include page="template_footer.jsp" />
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