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authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 21 Mar 2012 04:27:48 +0000 (04:27 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 21 Mar 2012 04:27:48 +0000 (04:27 +0000)
forester/ruby/scripts/preprocess.rb patch | blob | history

diff --git a/forester/ruby/scripts/preprocess.rb b/forester/ruby/scripts/preprocess.rb
index 8829eb6..455b97e 100644 (file)
--- a/forester/ruby/scripts/preprocess.rb
+++ b/forester/ruby/scripts/preprocess.rb
@@ -10,7 +10,7 @@ input = ARGV[ 0 ]
 
 pfam = ARGV[ 1 ]
 
-system( "hmmscan --nobias --domtblout " + input + "_hmmscan_260_10 -E 10 " + pfam +  " + input + ".ni.fasta" )
+system( "hmmscan --nobias --domtblout " + input + "_hmmscan_260_10 -E 10 " + pfam + " "  + input + ".ni.fasta" )
 
 system( "hsp " + input + "_hmmscan_260_10 " + input + "_hmmscan_260_10_domain_table" )