initial commit

diff --git a/forester/data/surfacing/genome_locations_eos.txt b/forester/data/surfacing/genome_locations_eos.txt
new file mode 100644 (file)
index 0000000..54c982f
--- /dev/null
+++ b/forester/data/surfacing/genome_locations_eos.txt
@@ -0,0 +1,484 @@
+# Last updated: 140319
+#
+# Ophistokonta::Animals (mammals)
+BOVIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOVIN.fasta
+CALJA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CALJA.fasta
+CANFA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CANFA.fasta
+CAVPO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAVPO.fasta
+FELCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FELCA.fasta
+GORGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GORGO.fasta
+HETGA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HETGA.fasta
+HORSE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HORSE.fasta
+HUMAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HUMAN.fasta
+LOXAF   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LOXAF.fasta
+MACMU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MACMU.fasta
+MONDO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MONDO.fasta
+MOUSE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MOUSE.fasta
+MYOLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYOLU.fasta
+NOMLE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NOMLE.fasta
+ORNAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORNAN.fasta
+OTOGA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OTOGA.fasta
+PANTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PANTR.fasta
+PIG /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PIG.fasta
+PONAB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PONAB.fasta
+RABIT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RABIT.fasta
+RAT /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RAT.fasta
+SPETR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SPETR.fasta
+# Ophistokonta::Animals (except mammals)
+ACRDI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACRDI.fasta
+ACREC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACREC.fasta
+ACYPI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACYPI.fasta
+AEDAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AEDAE.fasta
+AMPQE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AMPQE.fasta
+ANAPL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ANAPL.fasta
+ANOCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ANOCA.fasta
+ANOGA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ANOGA.fasta
+APIME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/APIME.fasta
+ASTMX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASTMX.fasta
+ATTCE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ATTCE.fasta
+BOMMO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOMMO.fasta
+BRAFL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BRAFL.fasta
+BRUMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BRUMA.fasta
+CAEBE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAEBE.fasta
+CAEBR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAEBR.fasta
+CAEEL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAEEL.fasta
+CAEJA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAEJA.fasta
+CAERE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAERE.fasta
+CALMI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CALMI.fasta
+CAMFO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAMFO.fasta
+CHICK   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHICK.fasta
+CIOIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CIOIN.fasta
+CIOSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CIOSA.fasta
+CLOSI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CLOSI.fasta
+CRAGI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CRAGI.fasta
+CAPTE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAPTE.fasta
+CULPI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CULPI.fasta
+DANPL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DANPL.fasta
+DANRE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DANRE.fasta
+DAPPU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DAPPU.fasta
+DROAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROAN.fasta
+DROER   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROER.fasta
+DROGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROGR.fasta
+DROME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROME.fasta
+DROMO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROMO.fasta
+DROPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROPE.fasta
+DROPS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROPS.fasta
+DROSE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROSE.fasta
+DROSI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROSI.fasta
+DROVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROVI.fasta
+DROWI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROWI.fasta
+DROYA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DROYA.fasta
+ECHMU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ECHMU.fasta
+FICAL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FICAL.fasta
+GADMO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GADMO.fasta
+GASAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GASAC.fasta
+HELRO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HELRO.fasta
+HYDVU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HYDVU.fasta
+HYMMI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HYMMI.fasta
+IXOSC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/IXOSC.fasta
+LATCH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LATCH.fasta
+LEPOC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEPOC.fasta
+LOTGI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LOTGI.fasta
+LYTVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LYTVA.fasta
+MELGA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MELGA.fasta
+MNELE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MNELE.fasta
+NASVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NASVI.fasta
+NEMVE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NEMVE.fasta
+OIKDI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OIKDI.fasta
+OPHHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OPHHA.fasta
+ORENI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORENI.fasta
+ORYLA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORYLA.fasta
+PATMI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PATMI.fasta
+PEDHC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PEDHC.fasta
+PELSI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PELSI.fasta
+PETMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PETMA.fasta
+PINFU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PINFU.fasta
+PRIPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PRIPA.fasta
+SACKO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SACKO.fasta
+SCHMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SCHMA.fasta
+STRMM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STRMM.fasta
+STRPU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STRPU.fasta
+TAEGU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TAEGU.fasta
+TAKRU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TAKRU.fasta
+TETNG   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TETNG.fasta
+TETUR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TETUR.fasta
+TRIAD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIAD.fasta
+TRICA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRICA.fasta
+TRISP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRISP.fasta
+WUCBA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/WUCBA.fasta
+XENTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/XENTR.fasta
+XIPMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/XIPMA.fasta
+# Ophistokonta::Choanoflagellates
+SALS5   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SALS5.fasta
+MONBE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MONBE.fasta
+# Ophistokonta::Filasterea
+CAPO3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAPO3.fasta
+# Ophistokonta::Ichthyosporea
+SARXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SARXX.fasta
+# Ophistokonta::Fungi
+AALXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AALXX.fasta
+AGABU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AGABU.fasta
+AJECG   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AJECG.fasta
+ALLMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALLMA.fasta
+APMXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/APMXX.fasta
+ASHGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASHGO.fasta
+ASPCL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASPCL.fasta
+ASPFN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASPFN.fasta
+ASPNC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASPNC.fasta
+BATDJ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BATDJ.fasta
+BCOXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BCOXX.fasta
+BOTF4   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOTF4.fasta
+CANAL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CANAL.fasta
+CANTT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CANTT.fasta
+CERSU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CERSU.fasta
+CHAGB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHAGB.fasta
+COCIM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/COCIM.fasta
+COCSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/COCSA.fasta
+COPC7   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/COPC7.fasta
+CPUXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CPUXX.fasta
+CREXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CREXX.fasta
+CRYNE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CRYNE.fasta
+DEBHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DEBHA.fasta
+DICSQ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DICSQ.fasta
+EDHAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EDHAE.fasta
+EMENI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EMENI.fasta
+ENCCU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENCCU.fasta
+ENCHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENCHA.fasta
+FPIXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FPIXX.fasta
+GIBZE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GIBZE.fasta
+GLOTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GLOTR.fasta
+HETAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HETAN.fasta
+HYPVG   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HYPVG.fasta
+JARXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/JARXX.fasta
+KLULA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/KLULA.fasta
+LACBS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LACBS.fasta
+MAGGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MAGGR.fasta
+MALGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MALGO.fasta
+MELLP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MELLP.fasta
+SPHMS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SPHMS.fasta
+MUCCI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MUCCI.fasta
+MVNXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MVNXX.fasta
+MYCGM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYCGM.fasta
+NAUCC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NAUCC.fasta
+NEOFI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NEOFI.fasta
+NEUCR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NEUCR.fasta
+PFIXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PFIXX.fasta
+PHANO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHANO.fasta
+PHYBL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYBL.fasta
+PIRSE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PIRSE.fasta
+PLEOS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PLEOS.fasta
+PNECA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PNECA.fasta
+PPLXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PPLXX.fasta
+PUCGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PUCGR.fasta
+PYRTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRTR.fasta
+RHIID   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHIID.fasta
+RHIO9   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHIO9.fasta
+RHIOR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHIOR.fasta
+RHOGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHOGR.fasta
+SCHJY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SCHJY.fasta
+SCHOT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SCHOT.fasta
+SCHPO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SCHPO.fasta
+SCLS1   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SCLS1.fasta
+SERL9   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SERL9.fasta
+SETTU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SETTU.fasta
+SPIPN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SPIPN.fasta
+SPORO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SPORO.fasta
+THIHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THIHA.fasta
+TRAHO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRAHO.fasta
+TRAVE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRAVE.fasta
+TREME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TREME.fasta
+TUBMM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TUBMM.fasta
+UNCRE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/UNCRE.fasta
+USTMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/USTMA.fasta
+VAVCU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VAVCU.fasta
+VITCO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VITCO.fasta
+WALSC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/WALSC.fasta
+WOLCO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/WOLCO.fasta
+YARLI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/YARLI.fasta
+YEAST   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/YEAST.fasta
+# Ophistokonta::Fonticula & Nucleariidae
+FALXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FALXX.fasta
+# Apusozoa
+TTRXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TTRXX.fasta
+# Amoebozoa
+DICDI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DICDI.fasta
+DICFS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DICFS.fasta
+DICPU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DICPU.fasta
+ENTBH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTBH.fasta
+ENTDS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTDS.fasta
+ENTHI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTHI.fasta
+POLPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/POLPA.fasta
+# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+AMBTC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AMBTC.fasta
+AQUCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AQUCA.fasta
+ARALY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARALY.fasta
+ARATH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARATH.fasta
+BRADI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BRADI.fasta
+CARPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CARPA.fasta
+CCLXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CCLXX.fasta
+CITSI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CITSI.fasta
+CUCSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CUCSA.fasta
+EUCGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EUCGR.fasta
+FRAVE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FRAVE.fasta
+HORVD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HORVD.fasta
+MAIZE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MAIZE.fasta
+MANES   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MANES.fasta
+MEDTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MEDTR.fasta
+MIMGU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MIMGU.fasta
+MUSAM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MUSAM.fasta
+ORYSJ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORYSJ.fasta
+PHYPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYPA.fasta
+PICAB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PICAB.fasta
+POPTR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/POPTR.fasta
+PRUPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PRUPE.fasta
+RICCO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RICCO.fasta
+SELML   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SELML.fasta
+SETIT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SETIT.fasta
+SOLLC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOLLC.fasta
+SOLTU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOLTU.fasta
+SORBI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SORBI.fasta
+SOYBN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOYBN.fasta
+THEHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEHA.fasta
+VITVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VITVI.fasta
+# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+ASCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASCXX.fasta
+CHLRE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLRE.fasta
+CHLVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLVA.fasta
+CSUXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CSUXX.fasta
+MICPC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MICPC.fasta
+MICSR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MICSR.fasta
+ORCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORCXX.fasta
+OSTLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTLU.fasta
+OSTTA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTTA.fasta
+VOLCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VOLCA.fasta
+# Corticata::Archaeplastida::Rhodophyta
+CYAME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYAME.fasta
+# Corticata::Chromalveolates
+AKEXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AKEXX.fasta
+ALIXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALIXX.fasta
+AURAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AURAN.fasta
+BABBO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BABBO.fasta
+BLAHO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BLAHO.fasta
+CRYHO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CRYHO.fasta
+CRYPI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CRYPI.fasta
+EIMAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EIMAC.fasta
+ICHMG   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ICHMG.fasta
+PERM5   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PERM5.fasta
+ECTSI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ECTSI.fasta
+EMIHU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EMIHU.fasta
+FCYXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FCYXX.fasta
+GUITH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GUITH.fasta
+HYAAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HYAAE.fasta
+PARTE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PARTE.fasta
+PHATR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHATR.fasta
+PHYCP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYCP.fasta
+PHYIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYIN.fasta
+PHYRM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYRM.fasta
+PHYSO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHYSO.fasta
+PLACH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PLACH.fasta
+PLAF7   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PLAF7.fasta
+PLAVS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PLAVS.fasta
+PLAYO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PLAYO.fasta
+PYTUL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYTUL.fasta
+SAGXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SAGXX.fasta
+TETTS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TETTS.fasta
+THAOC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THAOC.fasta
+THAPS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THAPS.fasta
+THEAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEAN.fasta
+THEPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEPA.fasta
+TOXGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TOXGO.fasta
+# Cabozoa::Excavata
+BODSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BODSA.fasta
+GIAIC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GIAIC.fasta
+LEIBR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIBR.fasta
+LEIIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIIN.fasta
+LEIMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIMA.fasta
+NAEGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NAEGR.fasta
+TRIVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIVA.fasta
+TRYB2   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRYB2.fasta
+# Cabozoa::Rhizaria
+BIGNA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BIGNA.fasta
+# Archaea
+AERPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AERPE.fasta
+ARCFU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARCFU.fasta
+CALMQ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CALMQ.fasta
+HALMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HALMA.fasta
+HALS3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HALS3.fasta
+HALSP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HALSP.fasta
+HALWD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HALWD.fasta
+HYPBU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HYPBU.fasta
+IGNH4   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/IGNH4.fasta
+KORCO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/KORCO.fasta
+META3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/META3.fasta
+METAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METAC.fasta
+METB6   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METB6.fasta
+METBF   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METBF.fasta
+METBU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METBU.fasta
+METHU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METHU.fasta
+METJA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METJA.fasta
+METKA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METKA.fasta
+METLZ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METLZ.fasta
+METMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METMA.fasta
+METMJ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METMJ.fasta
+METMP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METMP.fasta
+METS3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METS3.fasta
+METS5   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METS5.fasta
+METST   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METST.fasta
+METTH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METTH.fasta
+METTP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METTP.fasta
+METVS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METVS.fasta
+NANEQ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NANEQ.fasta
+NATPH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NATPH.fasta
+NITMS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NITMS.fasta
+PICTO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PICTO.fasta
+PYRAB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRAB.fasta
+PYRAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRAE.fasta
+PYRAR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRAR.fasta
+PYRCJ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRCJ.fasta
+PYRFU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRFU.fasta
+PYRHO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRHO.fasta
+PYRIL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PYRIL.fasta
+THEKO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEKO.fasta
+STAMF   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STAMF.fasta
+SULAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SULAC.fasta
+SULSO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SULSO.fasta
+SULTO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SULTO.fasta
+THEAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEAC.fasta
+THENV   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THENV.fasta
+THEON   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEON.fasta
+THEPD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEPD.fasta
+THEVO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEVO.fasta
+# Bacteria
+ACAM1   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACAM1.fasta
+KORVE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/KORVE.fasta
+ACICY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACICY.fasta
+ACIFE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ACIFE.fasta
+AGRT5   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AGRT5.fasta
+AKKM8   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AKKM8.fasta
+ALHEH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALHEH.fasta
+ANADE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ANADE.fasta
+ANAVT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ANAVT.fasta
+AQUAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AQUAE.fasta
+BACAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BACAN.fasta
+BACFR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BACFR.fasta
+BACHD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BACHD.fasta
+BACSU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BACSU.fasta
+BACTN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BACTN.fasta
+BARHE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BARHE.fasta
+BIFLO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BIFLO.fasta
+BORBU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BORBU.fasta
+BRAJA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BRAJA.fasta
+CAMJE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAMJE.fasta
+CARHZ   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CARHZ.fasta
+CAUCR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CAUCR.fasta
+CHLAU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLAU.fasta
+CHLCH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLCH.fasta
+CHLFF   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLFF.fasta
+CHLMU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLMU.fasta
+CHLP8   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLP8.fasta
+CHLPB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLPB.fasta
+CHLPN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLPN.fasta
+CHLTA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLTA.fasta
+CHLTE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLTE.fasta
+CHRSD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHRSD.fasta
+CLOP1   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CLOP1.fasta
+CORJK   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CORJK.fasta
+CYTH3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYTH3.fasta
+DECAR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DECAR.fasta
+DEHE1   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DEHE1.fasta
+DEHSB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DEHSB.fasta
+DEIGD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DEIGD.fasta
+DEIRA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DEIRA.fasta
+DESDE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DESDE.fasta
+DESHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DESHA.fasta
+DESPS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/DESPS.fasta
+ECO57   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ECO57.fasta
+ECOLI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ECOLI.fasta
+EUBR3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/EUBR3.fasta
+FERNB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FERNB.fasta
+FLAJO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FLAJO.fasta
+FRATU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FRATU.fasta
+FUSNU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/FUSNU.fasta
+GEOKA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GEOKA.fasta
+GEOME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GEOME.fasta
+GEOSL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GEOSL.fasta
+GLOVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GLOVI.fasta
+GRAFK   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GRAFK.fasta
+HAEIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HAEIN.fasta
+HALHL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HALHL.fasta
+HELPH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HELPH.fasta
+HERAU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/HERAU.fasta
+IDILO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/IDILO.fasta
+KINRD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/KINRD.fasta
+KOCRD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/KOCRD.fasta
+LACAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LACAC.fasta
+LACLA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LACLA.fasta
+LEGPN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEGPN.fasta
+LEPIC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEPIC.fasta
+LISMO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LISMO.fasta
+MESFL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MESFL.fasta
+METI4   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/METI4.fasta
+MICAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MICAN.fasta
+MYCGE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYCGE.fasta
+MYCLE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYCLE.fasta
+MYCPN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYCPN.fasta
+MYCTU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYCTU.fasta
+MYXXA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/MYXXA.fasta
+NEIME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NEIME.fasta
+NITEU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NITEU.fasta
+NITMU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NITMU.fasta
+NITOC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NITOC.fasta
+NITSB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NITSB.fasta
+NOSP7   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NOSP7.fasta
+NOSS7   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NOSS7.fasta
+PASMU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PASMU.fasta
+PELLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PELLU.fasta
+PELUB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PELUB.fasta
+PHOLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHOLU.fasta
+PHOPR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PHOPR.fasta
+PORGI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PORGI.fasta
+PROAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PROAE.fasta
+PROMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PROMA.fasta
+PROMM   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PROMM.fasta
+PROMP   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PROMP.fasta
+PROVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PROVI.fasta
+PSEAE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PSEAE.fasta
+PSEF5   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PSEF5.fasta
+PSEPF   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/PSEPF.fasta
+RALME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RALME.fasta
+RHIEC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHIEC.fasta
+RHOBA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHOBA.fasta
+RHOPT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHOPT.fasta
+RHORU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHORU.fasta
+RHOS1   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RHOS1.fasta
+RICTY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RICTY.fasta
+ROSDO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ROSDO.fasta
+RUBXD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RUBXD.fasta
+SALRD   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SALRD.fasta
+SALTY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SALTY.fasta
+SHEDO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SHEDO.fasta
+SHIFL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SHIFL.fasta
+SOLUS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOLUS.fasta
+STAAU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STAAU.fasta
+STRCO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STRCO.fasta
+STRPN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STRPN.fasta
+STRPY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/STRPY.fasta
+SULNB   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SULNB.fasta
+SYNAS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SYNAS.fasta
+SYNEL   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SYNEL.fasta
+SYNS3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SYNS3.fasta
+SYNY3   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SYNY3.fasta
+THEFY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEFY.fasta
+THELT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THELT.fasta
+THEMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEMA.fasta
+THET8   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THET8.fasta
+THETN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THETN.fasta
+THICR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THICR.fasta
+THIDE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THIDE.fasta
+TREPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TREPA.fasta
+TRIER   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIER.fasta
+UREPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/UREPA.fasta
+VIBCH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VIBCH.fasta
+XANAC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/XANAC.fasta
+XYLFT   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/XYLFT.fasta
+YERPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/YERPE.fasta

diff --git a/forester/data/surfacing/genomes_eos_all.txt b/forester/data/surfacing/genomes_eos_all.txt
new file mode 100644 (file)
index 0000000..2b9fe4b
--- /dev/null
+++ b/forester/data/surfacing/genomes_eos_all.txt
@@ -0,0 +1,480 @@
+# Last updated: 140319
+#
+# Ophistokonta::Animals (mammals)
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOVIN.hmmscan    BOVIN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CANFA.hmmscan    CANFA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAVPO.hmmscan    CAVPO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FELCA.hmmscan    FELCA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GORGO.hmmscan    GORGO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HETGA.hmmscan    HETGA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HORSE.hmmscan    HORSE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HUMAN.hmmscan    HUMAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LOXAF.hmmscan    LOXAF
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MACMU.hmmscan    MACMU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MONDO.hmmscan    MONDO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MOUSE.hmmscan    MOUSE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NOMLE.hmmscan    NOMLE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ORNAN.hmmscan    ORNAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OTOGA.hmmscan    OTOGA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PANTR.hmmscan    PANTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PIG.hmmscan      PIG
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RABIT.hmmscan    RABIT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RAT.hmmscan      RAT
+# Ophistokonta::Animals (except mammals)
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACRDI.hmmscan    ACRDI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACREC.hmmscan    ACREC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACYPI.hmmscan    ACYPI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AEDAE.hmmscan    AEDAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMPQE.hmmscan    AMPQE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ANAPL.hmmscan    ANAPL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ANOCA.hmmscan    ANOCA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ANOGA.hmmscan    ANOGA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/APIME.hmmscan    APIME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASTMX.hmmscan    ASTMX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ATTCE.hmmscan    ATTCE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOMMO.hmmscan    BOMMO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BRAFL.hmmscan    BRAFL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BRUMA.hmmscan    BRUMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAEBE.hmmscan    CAEBE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAEBR.hmmscan    CAEBR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAEEL.hmmscan    CAEEL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAEJA.hmmscan    CAEJA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAERE.hmmscan    CAERE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CALMI.hmmscan    CALMI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAMFO.hmmscan    CAMFO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHICK.hmmscan    CHICK
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CIOIN.hmmscan    CIOIN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CIOSA.hmmscan    CIOSA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CLOSI.hmmscan    CLOSI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CRAGI.hmmscan    CRAGI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAPTE.hmmscan    CAPTE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CULPI.hmmscan    CULPI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DANPL.hmmscan    DANPL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DANRE.hmmscan    DANRE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DAPPU.hmmscan    DAPPU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROAN.hmmscan    DROAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROER.hmmscan    DROER
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROGR.hmmscan    DROGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROME.hmmscan    DROME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROMO.hmmscan    DROMO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROPE.hmmscan    DROPE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROPS.hmmscan    DROPS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROSE.hmmscan    DROSE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROSI.hmmscan    DROSI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROVI.hmmscan    DROVI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROWI.hmmscan    DROWI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DROYA.hmmscan    DROYA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ECHMU.hmmscan    ECHMU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FICAL.hmmscan    FICAL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GADMO.hmmscan    GADMO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GASAC.hmmscan    GASAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HELRO.hmmscan    HELRO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HYDVU.hmmscan    HYDVU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HYMMI.hmmscan    HYMMI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/IXOSC.hmmscan    IXOSC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LATCH.hmmscan    LATCH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEPOC.hmmscan    LEPOC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LOTGI.hmmscan    LOTGI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LYTVA.hmmscan    LYTVA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MELGA.hmmscan    MELGA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MNELE.hmmscan    MNELE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NASVI.hmmscan    NASVI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NEMVE.hmmscan    NEMVE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OIKDI.hmmscan    OIKDI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OPHHA.hmmscan    OPHHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ORENI.hmmscan    ORENI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ORYLA.hmmscan    ORYLA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PATMI.hmmscan    PATMI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PEDHC.hmmscan    PEDHC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PELSI.hmmscan    PELSI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PETMA.hmmscan    PETMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PINFU.hmmscan    PINFU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PRIPA.hmmscan    PRIPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SACKO.hmmscan    SACKO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SCHMA.hmmscan    SCHMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STRMM.hmmscan    STRMM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STRPU.hmmscan    STRPU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TAEGU.hmmscan    TAEGU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TAKRU.hmmscan    TAKRU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TETNG.hmmscan    TETNG
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TETUR.hmmscan    TETUR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIAD.hmmscan    TRIAD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRICA.hmmscan    TRICA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRISP.hmmscan    TRISP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/WUCBA.hmmscan    WUCBA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/XENTR.hmmscan    XENTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/XIPMA.hmmscan    XIPMA
+# Ophistokonta::Choanoflagellates
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SALS5.hmmscan    SALS5
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MONBE.hmmscan    MONBE
+# Ophistokonta::Filasterea
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAPO3.hmmscan    CAPO3
+# Ophistokonta::Ichthyosporea
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SARXX.hmmscan    SARXX
+# Ophistokonta::Fungi
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AALXX.hmmscan    AALXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AGABU.hmmscan    AGABU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AJECG.hmmscan    AJECG
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALLMA.hmmscan    ALLMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/APMXX.hmmscan    APMXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASHGO.hmmscan    ASHGO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASPCL.hmmscan    ASPCL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASPFN.hmmscan    ASPFN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASPNC.hmmscan    ASPNC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BATDJ.hmmscan    BATDJ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BCOXX.hmmscan    BCOXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOTF4.hmmscan    BOTF4
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CANAL.hmmscan    CANAL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CANTT.hmmscan    CANTT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CERSU.hmmscan    CERSU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHAGB.hmmscan    CHAGB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/COCIM.hmmscan    COCIM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/COCSA.hmmscan    COCSA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/COPC7.hmmscan    COPC7
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CPUXX.hmmscan    CPUXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CREXX.hmmscan    CREXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CRYNE.hmmscan    CRYNE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DEBHA.hmmscan    DEBHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DICSQ.hmmscan    DICSQ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EDHAE.hmmscan    EDHAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EMENI.hmmscan    EMENI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENCCU.hmmscan    ENCCU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENCHA.hmmscan    ENCHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FPIXX.hmmscan    FPIXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIBZE.hmmscan    GIBZE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GLOTR.hmmscan    GLOTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HETAN.hmmscan    HETAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HYPVG.hmmscan    HYPVG
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/JARXX.hmmscan    JARXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/KLULA.hmmscan    KLULA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LACBS.hmmscan    LACBS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MAGGR.hmmscan    MAGGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MALGO.hmmscan    MALGO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MELLP.hmmscan    MELLP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SPHMS.hmmscan    SPHMS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MUCCI.hmmscan    MUCCI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MVNXX.hmmscan    MVNXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYCGM.hmmscan    MYCGM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAUCC.hmmscan    NAUCC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NEOFI.hmmscan    NEOFI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NEUCR.hmmscan    NEUCR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PFIXX.hmmscan    PFIXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHANO.hmmscan    PHANO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYBL.hmmscan    PHYBL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PIRSE.hmmscan    PIRSE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PLEOS.hmmscan    PLEOS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PNECA.hmmscan    PNECA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PPLXX.hmmscan    PPLXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PUCGR.hmmscan    PUCGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRTR.hmmscan    PYRTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHIID.hmmscan    RHIID
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHIO9.hmmscan    RHIO9
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHIOR.hmmscan    RHIOR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHOGR.hmmscan    RHOGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SCHJY.hmmscan    SCHJY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SCHOT.hmmscan    SCHOT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SCHPO.hmmscan    SCHPO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SCLS1.hmmscan    SCLS1
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SERL9.hmmscan    SERL9
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SETTU.hmmscan    SETTU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SPIPN.hmmscan    SPIPN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SPORO.hmmscan    SPORO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THIHA.hmmscan    THIHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRAHO.hmmscan    TRAHO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRAVE.hmmscan    TRAVE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TREME.hmmscan    TREME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TUBMM.hmmscan    TUBMM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/UNCRE.hmmscan    UNCRE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/USTMA.hmmscan    USTMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VAVCU.hmmscan    VAVCU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITCO.hmmscan    VITCO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/WALSC.hmmscan    WALSC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/WOLCO.hmmscan    WOLCO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/YARLI.hmmscan    YARLI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/YEAST.hmmscan    YEAST
+# Ophistokonta::Fonticula & Nucleariidae
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FALXX.hmmscan    FALXX
+# Apusozoa
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TTRXX.hmmscan    TTRXX
+# Amoebozoa
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DICDI.hmmscan    DICDI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DICFS.hmmscan    DICFS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DICPU.hmmscan    DICPU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTBH.hmmscan    ENTBH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTDS.hmmscan    ENTDS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTHI.hmmscan    ENTHI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POLPA.hmmscan    POLPA
+# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMBTC.hmmscan    AMBTC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUCA.hmmscan    AQUCA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARALY.hmmscan    ARALY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARATH.hmmscan    ARATH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BRADI.hmmscan    BRADI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CARPA.hmmscan    CARPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CCLXX.hmmscan    CCLXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CITSI.hmmscan    CITSI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CUCSA.hmmscan    CUCSA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EUCGR.hmmscan    EUCGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FRAVE.hmmscan    FRAVE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HORVD.hmmscan    HORVD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MAIZE.hmmscan    MAIZE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MANES.hmmscan    MANES
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MEDTR.hmmscan    MEDTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MIMGU.hmmscan    MIMGU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MUSAM.hmmscan    MUSAM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ORYSJ.hmmscan    ORYSJ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYPA.hmmscan    PHYPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PICAB.hmmscan    PICAB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POPTR.hmmscan    POPTR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PRUPE.hmmscan    PRUPE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RICCO.hmmscan    RICCO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SELML.hmmscan    SELML
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SETIT.hmmscan    SETIT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOLLC.hmmscan    SOLLC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOLTU.hmmscan    SOLTU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SORBI.hmmscan    SORBI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOYBN.hmmscan    SOYBN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEHA.hmmscan    THEHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITVI.hmmscan    VITVI
+# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASCXX.hmmscan    ASCXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLRE.hmmscan    CHLRE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLVA.hmmscan    CHLVA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CSUXX.hmmscan    CSUXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MICPC.hmmscan    MICPC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MICSR.hmmscan    MICSR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ORCXX.hmmscan    ORCXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTLU.hmmscan    OSTLU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTTA.hmmscan    OSTTA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VOLCA.hmmscan    VOLCA
+# Corticata::Archaeplastida::Rhodophyta
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYAME.hmmscan    CYAME
+# Corticata::Chromalveolates
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKEXX.hmmscan    AKEXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALIXX.hmmscan    ALIXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AURAN.hmmscan    AURAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BABBO.hmmscan    BABBO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BLAHO.hmmscan    BLAHO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CRYHO.hmmscan    CRYHO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CRYPI.hmmscan    CRYPI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EIMAC.hmmscan    EIMAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ICHMG.hmmscan    ICHMG
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PERM5.hmmscan    PERM5
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ECTSI.hmmscan    ECTSI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EMIHU.hmmscan    EMIHU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FCYXX.hmmscan    FCYXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GUITH.hmmscan    GUITH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HYAAE.hmmscan    HYAAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PARTE.hmmscan    PARTE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHATR.hmmscan    PHATR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYCP.hmmscan    PHYCP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYIN.hmmscan    PHYIN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYRM.hmmscan    PHYRM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHYSO.hmmscan    PHYSO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PLACH.hmmscan    PLACH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PLAF7.hmmscan    PLAF7
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PLAVS.hmmscan    PLAVS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PLAYO.hmmscan    PLAYO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYTUL.hmmscan    PYTUL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SAGXX.hmmscan    SAGXX
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TETTS.hmmscan    TETTS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THAOC.hmmscan    THAOC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THAPS.hmmscan    THAPS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAN.hmmscan    THEAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPA.hmmscan    THEPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TOXGO.hmmscan    TOXGO
+# Cabozoa::Excavata
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BODSA.hmmscan    BODSA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIAIC.hmmscan    GIAIC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIBR.hmmscan    LEIBR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIIN.hmmscan    LEIIN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIMA.hmmscan    LEIMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAEGR.hmmscan    NAEGR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIVA.hmmscan    TRIVA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRYB2.hmmscan    TRYB2
+# Cabozoa::Rhizaria
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIGNA.hmmscan    BIGNA
+# Archaea
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AERPE.hmmscan    AERPE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARCFU.hmmscan    ARCFU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CALMQ.hmmscan    CALMQ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HALMA.hmmscan    HALMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HALS3.hmmscan    HALS3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HALSP.hmmscan    HALSP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HALWD.hmmscan    HALWD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HYPBU.hmmscan    HYPBU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/IGNH4.hmmscan    IGNH4
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/KORCO.hmmscan    KORCO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/META3.hmmscan    META3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METAC.hmmscan    METAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METB6.hmmscan    METB6
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METBF.hmmscan    METBF
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METBU.hmmscan    METBU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METHU.hmmscan    METHU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METJA.hmmscan    METJA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METKA.hmmscan    METKA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METLZ.hmmscan    METLZ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METMA.hmmscan    METMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METMJ.hmmscan    METMJ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METMP.hmmscan    METMP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METS3.hmmscan    METS3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METS5.hmmscan    METS5
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METST.hmmscan    METST
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METTH.hmmscan    METTH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METTP.hmmscan    METTP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METVS.hmmscan    METVS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NANEQ.hmmscan    NANEQ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NATPH.hmmscan    NATPH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NITMS.hmmscan    NITMS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PICTO.hmmscan    PICTO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRAB.hmmscan    PYRAB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRAE.hmmscan    PYRAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRAR.hmmscan    PYRAR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRCJ.hmmscan    PYRCJ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRFU.hmmscan    PYRFU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRHO.hmmscan    PYRHO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PYRIL.hmmscan    PYRIL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEKO.hmmscan    THEKO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STAMF.hmmscan    STAMF
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SULAC.hmmscan    SULAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SULSO.hmmscan    SULSO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SULTO.hmmscan    SULTO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAC.hmmscan    THEAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THENV.hmmscan    THENV
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEON.hmmscan    THEON
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPD.hmmscan    THEPD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEVO.hmmscan    THEVO
+# Bacteria
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACAM1.hmmscan    ACAM1
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/KORVE.hmmscan    KORVE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACICY.hmmscan    ACICY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ACIFE.hmmscan    ACIFE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AGRT5.hmmscan    AGRT5
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKKM8.hmmscan    AKKM8
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALHEH.hmmscan    ALHEH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ANADE.hmmscan    ANADE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ANAVT.hmmscan    ANAVT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUAE.hmmscan    AQUAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BACAN.hmmscan    BACAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BACFR.hmmscan    BACFR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BACHD.hmmscan    BACHD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BACSU.hmmscan    BACSU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BACTN.hmmscan    BACTN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BARHE.hmmscan    BARHE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIFLO.hmmscan    BIFLO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BORBU.hmmscan    BORBU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BRAJA.hmmscan    BRAJA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAMJE.hmmscan    CAMJE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CARHZ.hmmscan    CARHZ
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CAUCR.hmmscan    CAUCR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLAU.hmmscan    CHLAU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLCH.hmmscan    CHLCH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLFF.hmmscan    CHLFF
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLMU.hmmscan    CHLMU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLP8.hmmscan    CHLP8
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLPB.hmmscan    CHLPB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLPN.hmmscan    CHLPN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLTA.hmmscan    CHLTA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLTE.hmmscan    CHLTE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHRSD.hmmscan    CHRSD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CLOP1.hmmscan    CLOP1
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CORJK.hmmscan    CORJK
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYTH3.hmmscan    CYTH3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DECAR.hmmscan    DECAR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DEHE1.hmmscan    DEHE1
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DEHSB.hmmscan    DEHSB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DEIGD.hmmscan    DEIGD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DEIRA.hmmscan    DEIRA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DESDE.hmmscan    DESDE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DESHA.hmmscan    DESHA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/DESPS.hmmscan    DESPS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ECO57.hmmscan    ECO57
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ECOLI.hmmscan    ECOLI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/EUBR3.hmmscan    EUBR3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FERNB.hmmscan    FERNB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FLAJO.hmmscan    FLAJO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FRATU.hmmscan    FRATU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/FUSNU.hmmscan    FUSNU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GEOKA.hmmscan    GEOKA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GEOME.hmmscan    GEOME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GEOSL.hmmscan    GEOSL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GLOVI.hmmscan    GLOVI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GRAFK.hmmscan    GRAFK
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HAEIN.hmmscan    HAEIN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HALHL.hmmscan    HALHL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HELPH.hmmscan    HELPH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/HERAU.hmmscan    HERAU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/IDILO.hmmscan    IDILO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/KINRD.hmmscan    KINRD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/KOCRD.hmmscan    KOCRD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LACAC.hmmscan    LACAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LACLA.hmmscan    LACLA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEGPN.hmmscan    LEGPN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEPIC.hmmscan    LEPIC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LISMO.hmmscan    LISMO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MESFL.hmmscan    MESFL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/METI4.hmmscan    METI4
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MICAN.hmmscan    MICAN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYCGE.hmmscan    MYCGE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYCLE.hmmscan    MYCLE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYCPN.hmmscan    MYCPN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYCTU.hmmscan    MYCTU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/MYXXA.hmmscan    MYXXA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NEIME.hmmscan    NEIME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NITEU.hmmscan    NITEU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NITMU.hmmscan    NITMU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NITOC.hmmscan    NITOC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NITSB.hmmscan    NITSB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NOSP7.hmmscan    NOSP7
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NOSS7.hmmscan    NOSS7
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PASMU.hmmscan    PASMU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PELLU.hmmscan    PELLU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PELUB.hmmscan    PELUB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHOLU.hmmscan    PHOLU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PHOPR.hmmscan    PHOPR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PORGI.hmmscan    PORGI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PROAE.hmmscan    PROAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PROMA.hmmscan    PROMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PROMM.hmmscan    PROMM
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PROMP.hmmscan    PROMP
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PROVI.hmmscan    PROVI
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PSEAE.hmmscan    PSEAE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PSEF5.hmmscan    PSEF5
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/PSEPF.hmmscan    PSEPF
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RALME.hmmscan    RALME
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHIEC.hmmscan    RHIEC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHOBA.hmmscan    RHOBA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHOPT.hmmscan    RHOPT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHORU.hmmscan    RHORU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RHOS1.hmmscan    RHOS1
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RICTY.hmmscan    RICTY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ROSDO.hmmscan    ROSDO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RUBXD.hmmscan    RUBXD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SALRD.hmmscan    SALRD
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SALTY.hmmscan    SALTY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SHEDO.hmmscan    SHEDO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SHIFL.hmmscan    SHIFL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOLUS.hmmscan    SOLUS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STAAU.hmmscan    STAAU
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STRCO.hmmscan    STRCO
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STRPN.hmmscan    STRPN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/STRPY.hmmscan    STRPY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SULNB.hmmscan    SULNB
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SYNAS.hmmscan    SYNAS
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SYNEL.hmmscan    SYNEL
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SYNS3.hmmscan    SYNS3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SYNY3.hmmscan    SYNY3
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEFY.hmmscan    THEFY
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THELT.hmmscan    THELT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEMA.hmmscan    THEMA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THET8.hmmscan    THET8
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THETN.hmmscan    THETN
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THICR.hmmscan    THICR
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THIDE.hmmscan    THIDE
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TREPA.hmmscan    TREPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIER.hmmscan    TRIER
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/UREPA.hmmscan    UREPA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VIBCH.hmmscan    VIBCH
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/XANAC.hmmscan    XANAC
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/XYLFT.hmmscan    XYLFT
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/YERPE.hmmscan    YERPE