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156bd6e
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implemented embl validation properly
author
jprocter
<Jim Procter>
Tue, 4 Nov 2008 13:29:51 +0000
(13:29 +0000)
committer
jprocter
<Jim Procter>
Tue, 4 Nov 2008 13:29:51 +0000
(13:29 +0000)
src/jalview/ws/dbsources/EmblCdsSouce.java
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diff --git
a/src/jalview/ws/dbsources/EmblCdsSouce.java
b/src/jalview/ws/dbsources/EmblCdsSouce.java
index
1ac5c76
..
b3242ad
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/
src/jalview/ws/dbsources/EmblCdsSouce.java
@@
-68,8
+68,9
@@
public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
\r
public boolean isValidReference(String accession)
\r
{
\r
- // TODO Auto-generated method stub
\r
- return true;
\r
+ // most embl CDS refs look like ..
\r
+ // TODO: improve EMBLCDS regex
\r
+ return (accession==null || accession.length()<2) ? false : new com.stevesoft.pat.Regex("^[A-Z]+[0-9]+").search(accession);
\r
}
\r
\r
/**
\r