<body>\r
<p><strong>Alignment Annotation</strong></p>\r
\r
-<p>In addition to the definition of groups, Jalview also allows you to mark particular \r
- columns of an alignment and add symbols and text in the annotation area shown \r
- below the alignment (which may be hidden if <strong>View→Show Annotation</strong> \r
- is not ticked). </p>\r
+<p>In addition to the definition of groups and sequence features, Jalview also \r
+ allows you to mark particular columns of an alignment and add symbols and text \r
+ in the annotation area shown below the alignment (which may be hidden if <strong>View→Show \r
+ Annotation</strong> is not ticked). </p>\r
<p>As of Jalview 2.08 precalculated annotations can be added to alignments from \r
the command line, drag and drop, or from the "File-> Load Features / \r
Annotations" menu item. See the <a href="annotationsFormat.html">Annotations \r
<td><div align="center"><strong>2.08</strong><br>\r
6/4/06</div></td>\r
<td><ul>\r
- <li>Editing can be locked to selection area</li>\r
+ <li>Editing can be locked to the selection area</li>\r
<li>Keyboard editing</li>\r
- <li>Create sequence features from Searches</li>\r
+ <li>Create sequence features from searches</li>\r
<li>Precalculated annotations can be loaded onto alignments</li>\r
<li>Features file allows grouping of features</li>\r
<li>Annotation Colouring scheme added</li>\r
<body>\r
<p><strong>What's new ?</strong> </p>\r
<p>Jalview Version 2.08</p>\r
-<p> <a href="editing/index.html">Editing</a> can be locked to selection area. \r
+<p> <a href="editing/index.html">Editing</a> can be locked to the selection area. \r
Any edits made within the locked area do not affect the rest of the alignment.</p>\r
-<p> Keyboard editing - press F2 to toggle Cursor mode On / Off. For a full list \r
+<p> Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list \r
of keyboard controls, look <a href="keys.html">here</a>.</p>\r
-<p> <a href="features/search.html">Create sequence features from Searches</a>. \r
+<p> <a href="features/search.html">Create sequence features from searches</a>. \r
Previously results from searches were added as alignment positions, which was \r
wrong. Now the search results are saved as sequence features and their visibility \r
and colour can be modified using the <a href="features/seqfeatures.html">Sequence \r
</p>\r
<p> <a href="colourSchemes/annotationColouring.html">Annotation Colouring</a> \r
scheme added. A new colour scheme which colours columns on a per-column value.</p>\r
-<p> Smooth fonts off by default - Faster rendering. Toggle on / off from the View \r
+<p> Smooth fonts off by default - faster rendering. Toggle on / off from the View \r
menu, or can be set in Preferences.</p>\r
<p> Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.<br>\r
</p>\r
git://source.jalview.org / jalview.git / commitdiff