Webservice Updated for scoremanager but I think I broke something on the way.

diff --git a/webservices/compbio/ws/client/Jws2Client.java b/webservices/compbio/ws/client/Jws2Client.java
index aa048b0..18424f6 100644 (file)
--- a/webservices/compbio/ws/client/Jws2Client.java
+++ b/webservices/compbio/ws/client/Jws2Client.java
@@ -150,7 +150,6 @@ public class Jws2Client {
                String presetName = CmdHelper.getPresetName(cmd);\r
 \r
                Metadata<T> msaws = (Metadata<T>) connect(hostname, service);\r
-               Metadata<T> foldws = (Metadata<T>) connect(hostname, service);\r
                Preset<T> preset = null;\r
                if (presetName != null) {\r
                        preset = MetadataHelper.getPreset(msaws, presetName);\r
@@ -164,7 +163,6 @@ public class Jws2Client {
 //             System.out.println("The Options read from the command line: " + customOptions);\r
                \r
                Alignment alignment = null;\r
-               String rnastruct = null;\r
                if (inputFile != null) {\r
                        Writer writer = null;\r
                        if (outFile != null) {\r
@@ -183,12 +181,6 @@ public class Jws2Client {
                                alignment = align(inputFile, (MsaWS<T>) msaws, preset,\r
                                                customOptions);\r
                                IOHelper.writeOut(writer, alignment);\r
-                       } else if (service.getServiceType() == FoldWS.class) {\r
-                               rnastruct = fold(inputFile, (FoldWS<T>) foldws, preset, customOptions);\r
-                               // No IOHelper method for rnastruct/String yet\r
-                               if (writer != null) {\r
-                                       writer.write(rnastruct);\r
-                               }\r
                        }\r
                        writer.close();\r
                }\r

diff --git a/webservices/compbio/ws/client/Services.java b/webservices/compbio/ws/client/Services.java
index 6840916..8b0d200 100644 (file)
--- a/webservices/compbio/ws/client/Services.java
+++ b/webservices/compbio/ws/client/Services.java
@@ -78,6 +78,7 @@ public enum Services {
                        case DisemblWS :\r
                        case GlobPlotWS :\r
                        case IUPredWS :\r
+                       case RNAalifoldWS :\r
                                return SequenceAnnotation.class;\r
 \r
                                // deliberate leaking\r
@@ -89,8 +90,6 @@ public enum Services {
                        case TcoffeeWS :\r
                                return MsaWS.class;\r
                                \r
-                       case RNAalifoldWS :\r
-                               return FoldWS.class;\r
                        default :\r
                                throw new RuntimeException("Unrecognised Web Service Type "\r
                                                + this + " - Should never happened!");\r

diff --git a/webservices/compbio/ws/server/RNAalifoldWS.java b/webservices/compbio/ws/server/RNAalifoldWS.java
index 7ff54e7..b05c973 100644 (file)
--- a/webservices/compbio/ws/server/RNAalifoldWS.java
+++ b/webservices/compbio/ws/server/RNAalifoldWS.java
@@ -12,6 +12,7 @@ import compbio.data.msa.FoldWS;
 import compbio.data.msa.JABAService;
 import compbio.data.msa.JManagement;
 import compbio.data.msa.Metadata;
+import compbio.data.msa.SequenceAnnotation;
 import compbio.data.sequence.Alignment;
 import compbio.data.sequence.RNAStruct;
 import compbio.data.sequence.FastaSequence;
@@ -23,143 +24,54 @@ import compbio.metadata.ChunkHolder;
 import compbio.metadata.JobStatus;
 import compbio.metadata.JobSubmissionException;
 import compbio.metadata.Limit;
+import compbio.metadata.LimitExceededException;
 import compbio.metadata.LimitsManager;
 import compbio.metadata.Option;
 import compbio.metadata.Preset;
 import compbio.metadata.PresetManager;
 import compbio.metadata.ResultNotAvailableException;
 import compbio.metadata.RunnerConfig;
+import compbio.metadata.UnsupportedRuntimeException;
 import compbio.metadata.WrongParameterException;
 import compbio.runner.Util;
+import compbio.runner.disorder.GlobPlot;
 import compbio.runner.structure.RNAalifold;
 
-@WebService(endpointInterface = "compbio.data.msa.FoldWS", targetNamespace = JABAService.SERVICE_NAMESPACE, serviceName = "RNAalifoldWS")
-public class RNAalifoldWS implements FoldWS<RNAalifold> {
+@WebService(endpointInterface = "compbio.data.msa.SequenceAnnotation", targetNamespace = JABAService.V2_SERVICE_NAMESPACE, serviceName = "RNAalifoldWS")
+public class RNAalifoldWS extends SequenceAnnotationService<RNAalifold> 
+               implements
+                       SequenceAnnotation<RNAalifold> {
 
        private static Logger log = Logger.getLogger(ClustalWS.class);
        
-       private static final RunnerConfig<RNAalifold> rnaalifoldOptions = Util.
-                       getSupportedOptions(RNAalifold.class);
-       
-       private static final PresetManager<RNAalifold> rnaalifoldPresets = Util
-                       .getPresets(RNAalifold.class);
-
-       private static final LimitsManager<RNAalifold> limitMan = compbio.engine.client.Util
-                       .getLimits(new RNAalifold().getType());
-       
-
-       @Override
-       public String fold(Alignment alignment)
-                       throws JobSubmissionException {
-               
-               // Validate clustal input here?
-               ConfiguredExecutable<RNAalifold> confRNAalifold = init(alignment);
-               return WSUtil.fold(alignment, confRNAalifold, log, "fold", getLimit(""));
-       }
-       
-       
-       ConfiguredExecutable<RNAalifold> init(Alignment dataset) throws JobSubmissionException {
-               RNAalifold rnaalifold = new RNAalifold();
-               rnaalifold.setInput(SkeletalExecutable.INPUT)
-                               .setOutput(SkeletalExecutable.OUTPUT)
-                               .setError(SkeletalExecutable.ERROR);
-               ConfiguredExecutable<RNAalifold> confRNAalifold = Configurator
-                               .configureExecutable(rnaalifold, dataset.getSequences());
-               return confRNAalifold;
+       public RNAalifoldWS() {
+               super (new RNAalifold(), log);
        }
-       
+
+       /*
+        * No options are supported, thus the result of this call will be as simple
+        * call to analize without parameters
+        */
        @Override
-       public String presetFold(Alignment alignment,
-                       Preset<RNAalifold> preset) throws JobSubmissionException,
-                       WrongParameterException {
-               // validate
-               if (preset == null) {
-                       throw new WrongParameterException("Preset must be Provided!");
-               }
-               Limit<RNAalifold> limit = getLimit(preset.getName());
-               ConfiguredExecutable<RNAalifold> confRNAalifold = init(alignment);
-               confRNAalifold.addParameters(preset.getOptions());
-               return WSUtil.fold(alignment, confRNAalifold, log, "presetFold", limit);
-       }
-               
-       @Override 
-       public String customFold(Alignment alignment,
-                       List<Option<RNAalifold>> options) throws JobSubmissionException,
+       public String customAnalize(List<FastaSequence> sequences,
+                       List<Option<RNAalifold>> options) throws UnsupportedRuntimeException,
+                       LimitExceededException, JobSubmissionException,
                        WrongParameterException {
-               // validate
-               ConfiguredExecutable<RNAalifold> confRNAalifold = init(alignment);
-               List<String> params = WSUtil.getCommands(options, 
-                               RNAalifold.KEY_VALUE_SEPARATOR);
-               confRNAalifold.addParameters(params);
-               log.info("Setting parameters: " + params);
-               return WSUtil.fold(alignment, confRNAalifold, log, "customFold", 
-                               getLimit(""));
-       }
-       
-       @Override
-       public RunnerConfig<RNAalifold> getRunnerOptions() {
-               return rnaalifoldOptions;
-       }
-       
-       @SuppressWarnings("unchecked")
-       public String getResult(String jobId) throws ResultNotAvailableException {
                
-               WSUtil.validateJobId(jobId);
-               AsyncExecutor asyncEngine = Configurator.getAsyncEngine(jobId);
-               ConfiguredExecutable<RNAalifold> rnaalifold = (ConfiguredExecutable<RNAalifold>) asyncEngine
-                               .getResults(jobId);
-               return rnaalifold.getResults();
-       }
-       
-       @Override
-       public boolean cancelJob(String jobId) {
-               WSUtil.validateJobId(jobId);
-               boolean result = WSUtil.cancelJob(jobId);
-               return result;
-       }
-       
-       @Override
-       public JobStatus getJobStatus(String jobId) {
-               WSUtil.validateJobId(jobId);
-               JobStatus status = WSUtil.getJobStatus(jobId);
-               return status;
-       }
-       
-       @Override
-       public Limit<RNAalifold> getLimit(String presetName) {
-               if (limitMan == null) {
-                       // No limit is configured
-                       return null;
-               }
-               Limit<RNAalifold> limit = limitMan.getLimitByName(presetName);
-               return limit;
-       }
-       
-       @Override
-       public LimitsManager<RNAalifold> getLimits() {
-               return limitMan;
-       }
-       
-       @Override 
-       // PlaceHolder
-       public PresetManager<RNAalifold> getPresets() {
-               if (rnaalifoldPresets == null) {
-                       // No presets are configured
-                       return null;
-               }
-               return rnaalifoldPresets;
+               return analize(sequences);
        }
 
+       /*
+        * No presets are supported, thus the result of this call will be as simple
+        * call to analize without parameters
+        */
        @Override
-       // PlaceHolder 
-       public ChunkHolder pullExecStatistics(String jobId, long position) {
+       public String presetAnalize(List<FastaSequence> sequences,
+                       Preset<RNAalifold> preset) throws UnsupportedRuntimeException,
+                       LimitExceededException, JobSubmissionException,
+                       WrongParameterException {
 
-//             WSUtil.validateJobId(jobId);
-//             String file = Configurator.getWorkDirectory(jobId) + File.separator
-//                             + RNAalifold.getStatFile();
-//             ChunkHolder cholder = WSUtil.pullFile(file, position);
-//             return cholder;
-               return new ChunkHolder("", -1);
+               return analize(sequences);
        }
 }
        

diff --git a/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl b/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
deleted file mode 100644 (file)
index fea5adb..0000000
--- a/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
+++ /dev/null
@@ -1,292 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is Metro/2.1 (branches/2.1-6728; 2011-02-03T14:14:58+0000) JAXWS-RI/2.2.3 JAXWS/2.2. -->
-<definitions targetNamespace="http://msa.data.compbio/01/01/2010/" name="RNAalifoldWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
-  <types>
-    <xsd:schema>
-      <xsd:import namespace="http://msa.data.compbio/01/01/2010/" schemaLocation="RNAalifoldWS_schema1.xsd"/>
-    </xsd:schema>
-  </types>
-  <message name="getResult">
-    <part name="parameters" element="tns:getResult"/>
-  </message>
-  <message name="getResultResponse">
-    <part name="parameters" element="tns:getResultResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
-  </message>
-  <message name="fold">
-    <part name="parameters" element="tns:fold"/>
-  </message>
-  <message name="foldResponse">
-    <part name="parameters" element="tns:foldResponse"/>
-  </message>
-  <message name="UnsupportedRuntimeException">
-    <part name="fault" element="tns:UnsupportedRuntimeException"/>
-  </message>
-  <message name="LimitExceededException">
-    <part name="fault" element="tns:LimitExceededException"/>
-  </message>
-  <message name="JobSubmissionException">
-    <part name="fault" element="tns:JobSubmissionException"/>
-  </message>
-  <message name="presetFold">
-    <part name="parameters" element="tns:presetFold"/>
-  </message>
-  <message name="presetFoldResponse">
-    <part name="parameters" element="tns:presetFoldResponse"/>
-  </message>
-  <message name="WrongParameterException">
-    <part name="fault" element="tns:WrongParameterException"/>
-  </message>
-  <message name="customFold">
-    <part name="parameters" element="tns:customFold"/>
-  </message>
-  <message name="customFoldResponse">
-    <part name="parameters" element="tns:customFoldResponse"/>
-  </message>
-  <message name="pullExecStatistics">
-    <part name="parameters" element="tns:pullExecStatistics"/>
-  </message>
-  <message name="pullExecStatisticsResponse">
-    <part name="parameters" element="tns:pullExecStatisticsResponse"/>
-  </message>
-  <message name="cancelJob">
-    <part name="parameters" element="tns:cancelJob"/>
-  </message>
-  <message name="cancelJobResponse">
-    <part name="parameters" element="tns:cancelJobResponse"/>
-  </message>
-  <message name="getJobStatus">
-    <part name="parameters" element="tns:getJobStatus"/>
-  </message>
-  <message name="getJobStatusResponse">
-    <part name="parameters" element="tns:getJobStatusResponse"/>
-  </message>
-  <message name="getRunnerOptions">
-    <part name="parameters" element="tns:getRunnerOptions"/>
-  </message>
-  <message name="getRunnerOptionsResponse">
-    <part name="parameters" element="tns:getRunnerOptionsResponse"/>
-  </message>
-  <message name="getLimit">
-    <part name="parameters" element="tns:getLimit"/>
-  </message>
-  <message name="getLimitResponse">
-    <part name="parameters" element="tns:getLimitResponse"/>
-  </message>
-  <message name="getLimits">
-    <part name="parameters" element="tns:getLimits"/>
-  </message>
-  <message name="getLimitsResponse">
-    <part name="parameters" element="tns:getLimitsResponse"/>
-  </message>
-  <message name="getPresets">
-    <part name="parameters" element="tns:getPresets"/>
-  </message>
-  <message name="getPresetsResponse">
-    <part name="parameters" element="tns:getPresetsResponse"/>
-  </message>
-  <portType name="FoldWS">
-    <operation name="getResult">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResultRequest" message="tns:getResult"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResultResponse" message="tns:getResultResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getResult/Fault/ResultNotAvailableException"/>
-    </operation>
-    <operation name="fold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/foldRequest" message="tns:fold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/foldResponse" message="tns:foldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/fold/Fault/JobSubmissionException"/>
-    </operation>
-    <operation name="presetFold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFoldRequest" message="tns:presetFold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFoldResponse" message="tns:presetFoldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/JobSubmissionException"/>
-      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/presetFold/Fault/WrongParameterException"/>
-    </operation>
-    <operation name="customFold">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFoldRequest" message="tns:customFold"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFoldResponse" message="tns:customFoldResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/JobSubmissionException"/>
-      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/customFold/Fault/WrongParameterException"/>
-    </operation>
-    <operation name="pullExecStatistics">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/pullExecStatisticsRequest" message="tns:pullExecStatistics"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/pullExecStatisticsResponse" message="tns:pullExecStatisticsResponse"/>
-    </operation>
-    <operation name="cancelJob">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/cancelJobRequest" message="tns:cancelJob"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/cancelJobResponse" message="tns:cancelJobResponse"/>
-    </operation>
-    <operation name="getJobStatus">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getJobStatusRequest" message="tns:getJobStatus"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getJobStatusResponse" message="tns:getJobStatusResponse"/>
-    </operation>
-    <operation name="getRunnerOptions">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getRunnerOptionsRequest" message="tns:getRunnerOptions"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getRunnerOptionsResponse" message="tns:getRunnerOptionsResponse"/>
-    </operation>
-    <operation name="getLimit">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitRequest" message="tns:getLimit"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitResponse" message="tns:getLimitResponse"/>
-    </operation>
-    <operation name="getLimits">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitsRequest" message="tns:getLimits"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getLimitsResponse" message="tns:getLimitsResponse"/>
-    </operation>
-    <operation name="getPresets">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getPresetsRequest" message="tns:getPresets"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/FoldWS/getPresetsResponse" message="tns:getPresetsResponse"/>
-    </operation>
-  </portType>
-  <binding name="RNAalifoldWSPortBinding" type="tns:FoldWS">
-    <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
-    <operation name="getResult">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
-    </operation>
-    <operation name="fold">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="UnsupportedRuntimeException">
-        <soap:fault name="UnsupportedRuntimeException" use="literal"/>
-      </fault>
-      <fault name="LimitExceededException">
-        <soap:fault name="LimitExceededException" use="literal"/>
-      </fault>
-      <fault name="JobSubmissionException">
-        <soap:fault name="JobSubmissionException" use="literal"/>
-      </fault>
-    </operation>
-    <operation name="presetFold">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="UnsupportedRuntimeException">
-        <soap:fault name="UnsupportedRuntimeException" use="literal"/>
-      </fault>
-      <fault name="LimitExceededException">
-        <soap:fault name="LimitExceededException" use="literal"/>
-      </fault>
-      <fault name="JobSubmissionException">
-        <soap:fault name="JobSubmissionException" use="literal"/>
-      </fault>
-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>
-    </operation>
-    <operation name="customFold">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-      <fault name="UnsupportedRuntimeException">
-        <soap:fault name="UnsupportedRuntimeException" use="literal"/>
-      </fault>
-      <fault name="LimitExceededException">
-        <soap:fault name="LimitExceededException" use="literal"/>
-      </fault>
-      <fault name="JobSubmissionException">
-        <soap:fault name="JobSubmissionException" use="literal"/>
-      </fault>
-      <fault name="WrongParameterException">
-        <soap:fault name="WrongParameterException" use="literal"/>
-      </fault>
-    </operation>
-    <operation name="pullExecStatistics">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="cancelJob">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="getJobStatus">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="getRunnerOptions">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="getLimit">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="getLimits">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-    <operation name="getPresets">
-      <soap:operation soapAction=""/>
-      <input>
-        <soap:body use="literal"/>
-      </input>
-      <output>
-        <soap:body use="literal"/>
-      </output>
-    </operation>
-  </binding>
-  <service name="RNAalifoldWS">
-    <port name="RNAalifoldWSPort" binding="tns:RNAalifoldWSPortBinding">
-      <soap:address location="REPLACE_WITH_ACTUAL_URL"/>
-    </port>
-  </service>
-</definitions>
-