JWS-68 parameters cannot take multiple option names (this should have

been caught via configuration file validation - see JWS-73)

diff --git a/conf/settings/GLprobsParameters.xml b/conf/settings/GLprobsParameters.xml
index ee18617..858f81d 100644 (file)
--- a/conf/settings/GLprobsParameters.xml
+++ b/conf/settings/GLprobsParameters.xml
@@ -29,7 +29,6 @@
             passes of consistency transformation\r
         </description>\r
         <optionNames>-c</optionNames>\r
-        <optionNames>--consistency</optionNames>\r
         <furtherDetails>prog_docs/glprobs.txt</furtherDetails>\r
         <defaultValue>2</defaultValue>\r
         <validValue>\r
@@ -45,7 +44,6 @@
             number of passes of iterative-refinement\r
         </description>\r
         <optionNames>-ir</optionNames>\r
-        <optionNames>--iterative-refinement</optionNames>\r
         <furtherDetails>prog_docs/glprobs.txt</furtherDetails>\r
         <defaultValue>100</defaultValue>\r
         <validValue>\r

diff --git a/conf/settings/MSAprobsParameters.xml b/conf/settings/MSAprobsParameters.xml
index 6ace32c..cc4227e 100644 (file)
--- a/conf/settings/MSAprobsParameters.xml
+++ b/conf/settings/MSAprobsParameters.xml
@@ -29,7 +29,6 @@
             passes of consistency transformation\r
         </description>\r
         <optionNames>-c</optionNames>\r
-        <optionNames>--consistency</optionNames>\r
         <furtherDetails>prog_docs/msaprobs.txt</furtherDetails>\r
         <defaultValue>2</defaultValue>\r
         <validValue>\r
@@ -45,7 +44,6 @@
                       number of passes of iterative-refinement\r
         </description>\r
         <optionNames>-ir</optionNames>\r
-        <optionNames>--iterative-refinement</optionNames>\r
         <furtherDetails>prog_docs/msaprobs.txt</furtherDetails>\r
         <defaultValue>10</defaultValue>\r
         <validValue>\r