-# Last updated: 140319
+# Last updated: 140708
#
# Ophistokonta::Animals (mammals)
BOVIN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BOVIN.fasta
ENTDS /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTDS.fasta
ENTHI /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTHI.fasta
POLPA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/POLPA.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
AMBTC /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AMBTC.fasta
AQUCA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AQUCA.fasta
ARALY /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARALY.fasta
SOYBN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SOYBN.fasta
THEHA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEHA.fasta
VITVI /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VITVI.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
ASCXX /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASCXX.fasta
CHLRE /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLRE.fasta
CHLVA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLVA.fasta
OSTLU /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTLU.fasta
OSTTA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTTA.fasta
VOLCA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VOLCA.fasta
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
CYAME /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CYAME.fasta
-# Corticata::Chromalveolates
+# Chromalveolates
AKEXX /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AKEXX.fasta
ALIXX /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ALIXX.fasta
AURAN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AURAN.fasta
THEAN /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEAN.fasta
THEPA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEPA.fasta
TOXGO /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TOXGO.fasta
-# Cabozoa::Excavata
+# Excavata
BODSA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BODSA.fasta
GIAIC /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GIAIC.fasta
LEIBR /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEIBR.fasta
NAEGR /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NAEGR.fasta
TRIVA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRIVA.fasta
TRYB2 /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRYB2.fasta
-# Cabozoa::Rhizaria
+# Rhizaria
BIGNA /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BIGNA.fasta
+RETFI /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RETFI.fasta
# Archaea
AERPE /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AERPE.fasta
ARCFU /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARCFU.fasta
-# Last updated: 140319
+# Last updated: 140708
#
# Ophistokonta::Animals (mammals)
BOVIN /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOVIN.fasta
ENTDS /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTDS.fasta
ENTHI /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTHI.fasta
POLPA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/POLPA.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
AMBTC /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AMBTC.fasta
AQUCA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AQUCA.fasta
ARALY /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARALY.fasta
SOYBN /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOYBN.fasta
THEHA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEHA.fasta
VITVI /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VITVI.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
ASCXX /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASCXX.fasta
CHLRE /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLRE.fasta
CHLVA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLVA.fasta
OSTLU /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTLU.fasta
OSTTA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTTA.fasta
VOLCA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VOLCA.fasta
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
CYAME /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYAME.fasta
-# Corticata::Chromalveolates
+# Chromalveolates
AKEXX /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AKEXX.fasta
ALIXX /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALIXX.fasta
AURAN /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AURAN.fasta
THEAN /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEAN.fasta
THEPA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEPA.fasta
TOXGO /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TOXGO.fasta
-# Cabozoa::Excavata
+# Excavata
BODSA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BODSA.fasta
GIAIC /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GIAIC.fasta
LEIBR /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIBR.fasta
NAEGR /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NAEGR.fasta
TRIVA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIVA.fasta
TRYB2 /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRYB2.fasta
-# Cabozoa::Rhizaria
+# Rhizaria
BIGNA /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BIGNA.fasta
+RETFI /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RETFI.fasta
# Archaea
AERPE /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AERPE.fasta
ARCFU /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARCFU.fasta
-# Last updated: 140319
+# Last updated: 140708
#
# Ophistokonta::Animals (mammals)
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOVIN.hmmscan BOVIN
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTDS.hmmscan ENTDS
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTHI.hmmscan ENTHI
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POLPA.hmmscan POLPA
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMBTC.hmmscan AMBTC
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUCA.hmmscan AQUCA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARALY.hmmscan ARALY
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOYBN.hmmscan SOYBN
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEHA.hmmscan THEHA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITVI.hmmscan VITVI
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASCXX.hmmscan ASCXX
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLRE.hmmscan CHLRE
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLVA.hmmscan CHLVA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTLU.hmmscan OSTLU
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTTA.hmmscan OSTTA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VOLCA.hmmscan VOLCA
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYAME.hmmscan CYAME
-# Corticata::Chromalveolates
+# Chromalveolates
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKEXX.hmmscan AKEXX
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALIXX.hmmscan ALIXX
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AURAN.hmmscan AURAN
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAN.hmmscan THEAN
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPA.hmmscan THEPA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TOXGO.hmmscan TOXGO
-# Cabozoa::Excavata
+# Excavata
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BODSA.hmmscan BODSA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIAIC.hmmscan GIAIC
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIBR.hmmscan LEIBR
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAEGR.hmmscan NAEGR
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIVA.hmmscan TRIVA
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRYB2.hmmscan TRYB2
-# Cabozoa::Rhizaria
+# Rhizaria
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIGNA.hmmscan BIGNA
+/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RETFI.hmmscan RETFI
# Archaea
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AERPE.hmmscan AERPE
/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARCFU.hmmscan ARCFU
-# Last updated: 140319
+# Last updated: 140708
#
# Ophistokonta::Animals (mammals)
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOVIN.hmmscan BOVIN
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTDS.hmmscan ENTDS
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTHI.hmmscan ENTHI
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POLPA.hmmscan POLPA
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMBTC.hmmscan AMBTC
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUCA.hmmscan AQUCA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARALY.hmmscan ARALY
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOYBN.hmmscan SOYBN
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEHA.hmmscan THEHA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITVI.hmmscan VITVI
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASCXX.hmmscan ASCXX
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLRE.hmmscan CHLRE
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLVA.hmmscan CHLVA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTLU.hmmscan OSTLU
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTTA.hmmscan OSTTA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VOLCA.hmmscan VOLCA
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYAME.hmmscan CYAME
-# Corticata::Chromalveolates
+# Chromalveolates
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKEXX.hmmscan AKEXX
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALIXX.hmmscan ALIXX
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AURAN.hmmscan AURAN
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAN.hmmscan THEAN
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPA.hmmscan THEPA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TOXGO.hmmscan TOXGO
-# Cabozoa::Excavata
+# Excavata
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BODSA.hmmscan BODSA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIAIC.hmmscan GIAIC
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIBR.hmmscan LEIBR
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAEGR.hmmscan NAEGR
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIVA.hmmscan TRIVA
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRYB2.hmmscan TRYB2
-# Cabozoa::Rhizaria
+# Rhizaria
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIGNA.hmmscan BIGNA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RETFI.hmmscan RETFI
# Archaea
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AERPE.hmmscan AERPE
/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARCFU.hmmscan ARCFU