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authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Tue, 12 Nov 2013 00:16:56 +0000 (00:16 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Tue, 12 Nov 2013 00:16:56 +0000 (00:16 +0000)
forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb patch | blob | history

diff --git a/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb b/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
index 8d0a27d..b13581a 100644 (file)
--- a/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
+++ b/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb
@@ -131,10 +131,10 @@ module Evoruby
           if LAUNCH_ANALYSIS
             puts "f. analysis:"
             Dir.chdir "#{hmm_name}/msa/"
-            run_command "#{PF} -s"
+            run_command "#{PF} -b=1 -s"
             Dir.chdir "../.."
             Dir.chdir "#{hmm_name}/msa100/"
-            run_command "#{PF} -s"
+            run_command "#{PF} -b=100 -s"
             Dir.chdir "../.."
             puts
           end