<p class="justify">
Peter V. Troshin, James B. Procter and Geoffrey J. Barton -
Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MS
- <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi: <a href="http://bioinformatics.oxfordjournals.org/content/early/2011/05/18/bioinformatics.btr304.abstract?keytype=ref&ijkey=gd0DwuYBzFRhe4T">
+ <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi:
+ <a href="https://doi.org/10.1093/bioinformatics/btr304">
10.1093/bioinformatics/btr304</a>.
</p>
</div>
</div>
<div class="panel-body">
<p class="justify">
- Read the <a href="${pageContext.request.contextPath}/getting_started.jsp">quickstart guides</a>
- to better decide which JABAWS distribution better suits your needs.
- Additional information is available in the <a href="${pageContext.request.contextPath}/man_docs.jsp">
- JABAWS documentation pages</a>.
+ Read the <a href="${pageContext.request.contextPath}/getting_started.jsp"><em>Getting Started</em></a>
+ guides to better decide which JABAWS distribution better suits your needs.
+ Additional information is available in the <a href="${pageContext.request.contextPath}/docs/index.html">
+ documentation pages</a>.
</p>
<br>
<div class="row">
<th>I want to use JABAWS for...</th>
</tr>
<tr>
- <td><a href="#va">JABAWS Virtual Appliance (VA)</a></td>
- <td>Running JABAWS services through Jalview on my
- computer with a <strong>private</strong> server</td>
+ <td><a href="#client">Command Line Interface (CLI)</a></td>
+ <td>Accessing a <strong>public</strong> or <strong>private</strong>
+ JABAWS server from my own software</td>
</tr>
<tr>
- <td><a href="#war">JABAWS Web Application aRchive (WAR)</a></td>
+ <td><a href="#war">Web Application aRchive (WAR)</a></td>
<td>Running JABAWS for my group, lab, or organization on the
<strong>local</strong> infrastructure</td>
</tr>
<tr>
- <td><a href="#client">JABAWS Command Line Interface (CLI)</a></td>
- <td>Accessing a <strong>public</strong> or <strong>private</strong>
- JABAWS server from my own software</td>
+ <td><a href="#va">Virtual Appliance (VA)</a></td>
+ <td>Running JABAWS services through Jalview on my
+ computer with a <strong>private</strong> server</td>
</tr>
<tr>
- <td><a href="#source">JABAWS Source Code</a></td>
+ <td><a href="#source">Source Code</a></td>
<td>Extend the functionally of JABAWS by adding new features and services.
</td>
</tr>
</div>
</div>
</div>
-<div class="row">
- <div class="col-md-12">
- <div class="panel panel-default">
- <div class="panel panel-heading">
- <h1 class="panel-title">Current Version</h1>
- </div>
- <div class="panel-body">
- <p class="justify">
- The current version of JABAWS is 2.2.0, released on XX March 2017. We advise you to update to JABAWS 2.2 as this version is fully backward compatible with JABAWS v1.0, v2.0 and v2.1.
- Please consult the <a href="${pageContext.request.contextPath}/man_about.jsp#jaba2.2">documentation pages</a>
- for the changelog and more information on compatibility between versions.</p>
- </p>
- </div>
- </div>
- </div>
-</div>
-<div class="row" id="va">
+<%--<div class="row">--%>
+ <%--<div class="col-md-12">--%>
+ <%--<div class="panel panel-default">--%>
+ <%--<div class="panel panel-heading">--%>
+ <%--<h1 class="panel-title">Current Version</h1>--%>
+ <%--</div>--%>
+ <%--<div class="panel-body">--%>
+ <%--<p class="justify">--%>
+ <%--The current version of JABAWS is 2.2.0, released on XX March 2017. We advise you to update to JABAWS 2.2 as this version is fully backward compatible with JABAWS v1.0, v2.0 and v2.1.--%>
+ <%--Please consult the <a href="${pageContext.request.contextPath}/man_about.jsp#jaba2.2">documentation pages</a>--%>
+ <%--for the changelog and more information on compatibility between versions.</p>--%>
+ <%--</p>--%>
+ <%--</div>--%>
+ <%--</div>--%>
+ <%--</div>--%>
+<%--</div>--%>
+<div class="row" id="client">
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Server Virtual Appliance (VA)</h1>
+ <h1 class="panel-title">Command Line Interface (CLI)</h1>
</div>
<div class="panel-body">
<p class="justify">
- The JABAWS virtual appliance (VA) is a way of running a fully functional JABAWS instance
- on your own computer. In order to use the VA, you have to install software from VMWare to run
- the virtual machine. We recommend <a href="http://www.vmware.com/products/player">VMWare Player</a>
- which is available for free for Windows and Linux users. Once the VA is running, you can
- configure <a href="http://www.jalview.org/download.html">Jalview</a> to use your local
- JABAWS VA with <a href="${pageContext.request.contextPath}/man_servervm.jsp#jalviewWithJaba">these instructions</a>.
-
+ The command line client is an executable Java program for scripting
+ against JABAWS web services. It is also useful as an example of how to
+ access JABAWS services if you intend to use JABAWS in your own
+ program, with functions demonstrating how to discover command line
+ parameters and presets supported by a service, and how to run,
+ monitor and retrieve the results of a job.
+ <em>
+ Note: The client is used in <a href="http://www.jalview.org/">Jalview</a>
+ to autogenerate a graphical user interface for JABA services.
+ </em>
</p>
<ul>
<li>
- <a href='${pageContext.request.contextPath}/archive/full-jabaws-client-2.2.0-pack.zip'>
- <i class="fa fa-download" aria-hidden="true"></i> JABAWS Virtual Appliance</a></li>
+ <a href='${pageContext.request.contextPath}/archive/min-jabaws-client-2.2.0.jar'>
+ <i class="fa fa-download" aria-hidden="true"></i>CLI jar file with binaries</a> (with log4j)</li>
+ <li>
+ <a href='${pageContext.request.contextPath}/archive/min-jabaws-client-nolog-2.2.0.jar'>
+ <i class="fa fa-download" aria-hidden="true"></i>CLI jar file with binaries</a> (without log4j)</li>
+ <li>
+ <a href='${pageContext.request.contextPath}/archive/jabaws-client-src-2.2.0.jar'>
+ <i class="fa fa-download" aria-hidden="true"></i>CLI client source</a></li>
</ul>
<p class="justify">
- Please check the JABAWS <a href="${pageContext.request.contextPath}/man_servervm.jsp">document pages</a>
- for further instructions.
+ The command line client displays help when executed without arguments,
+ more details is available from the JABAWS
+ <a href="${pageContext.request.contextPath}/docs/client.html">document pages</a>.
</p>
<p class="text-right">
<a href="#">Back to top <i class="fa fa-arrow-up" aria-hidden="true"></i></a>
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Server Web Application aRchive (WAR)</h1>
+ <h1 class="panel-title">Web Application aRchive (WAR)</h1>
</div>
<div class="panel-body">
<p class="justify">
Finally, you can use this version on a computer cluster.
The server is provided as a self-contained <a href="http://en.wikipedia.org/wiki/WAR_(Sun_file_format)">Web
Application aRchive (WAR) </a> containing all necessary binaries. The WAR file can be deployed on any web
- application server supporting the Java servlet specification (version 2.4 or above), i.e.
- <a href="http://tomcat.apache.org/download-70.cgi">Tomcat 7.0</a>.
+ application server supporting the Java Servlet Specification (version 2.4 or above), i.e.
+ <a href="http://tomcat.apache.org/download-80.cgi">Tomcat 8.5</a>.
</p>
<ul>
<li>
(includes source and precompiled Linux x86 and Windows binaries)</li>
</ul>
<p class="justify">
- Please check the JABAWS <a href="${pageContext.request.contextPath}/man_serverwar.jsp">document pages</a>
+ Please check the JABAWS <a href="${pageContext.request.contextPath}/docs/war.html">document pages</a>
for further instructions.
</p>
<p class="text-right">
</div>
</div>
</div>
-<div class="row" id="client">
+<div class="row" id="va">
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Command Line Client</h1>
+ <h1 class="panel-title">Virtual Appliance (VA)</h1>
</div>
<div class="panel-body">
<p class="justify">
- The command line client is an executable Java program for scripting
- against JABA web services. It is also useful as an example of how to
- access JABAWS services if you intend to use JABAWS in your own
- program, with functions demonstrating how to discover command line
- parameters and presets supported by a service, and how to run,
- monitor and retrieve the results of a job.
- <em>
- Note: The client is used in <a href="http://www.jalview.org/">Jalview</a>
- to autogenerate a graphical user interface for JABA services.
- </em>
+ The JABAWS Virtual Appliance (VA) is a way of running a fully functional JABAWS instance
+ on your own computer. In order to use the VA, you have to install software from VMWare to run
+ the virtual machine. We recommend <a href="http://www.vmware.com/products/player">VMWare Player</a>
+ which is available for free for Windows and Linux users. Once the VA is running, you can
+ configure <a href="http://www.jalview.org/download.html">Jalview</a> to use your local
+ JABAWS VA with <a href="${pageContext.request.contextPath}/man_servervm.jsp#jalviewWithJaba">these instructions</a>.
+
</p>
<ul>
- <li>Command line interface (CLI) client:
- <ul>
- <li>
- <a href='${pageContext.request.contextPath}/archive/min-jabaws-client-2.2.0.jar'>
- <i class="fa fa-download" aria-hidden="true"></i> jar file with binaries</a> (with log4j)</li>
- <li>
- <a href='${pageContext.request.contextPath}/archive/min-jabaws-client-nolog-2.2.0.jar'>
- <i class="fa fa-download" aria-hidden="true"></i> jar file with binaries</a> (without log4j)</li>
- <li>
- <a href='${pageContext.request.contextPath}/archive/jabaws-client-src-2.2.0.jar'>
- <i class="fa fa-download" aria-hidden="true"></i> client source</a></li>
- </ul>
- </li>
+ <li>
+ <a href='${pageContext.request.contextPath}/archive/JABAWS210.pack.tar.gz'>
+ <i class="fa fa-download" aria-hidden="true"></i> JABAWS Virtual Appliance</a> <strong>(VA for JABAWS v2.2 will be provided soon!)</strong></li>
</ul>
<p class="justify">
- The command line client displays help when executed without arguments,
- more details is available from the JABAWS
- <a href="${pageContext.request.contextPath}/man_serverwar.jsp">document pages</a>.
+ Please check the JABAWS <a href="${pageContext.request.contextPath}/docs/va.html">document pages</a>
+ for further instructions.
</p>
<p class="text-right">
<a href="#">Back to top <i class="fa fa-arrow-up" aria-hidden="true"></i></a>
<i class="fa fa-download" aria-hidden="true"></i> Binaries of the programs included in JABAWS</a></li>
<li>JABAWS Git repository
<a href='http://source.jalview.org/gitweb/?p=jabaws.git;a=summary'>http://source.jalview.org/git/jabaws.git</a>
+ and <a href='https://source.jalview.org/crucible/changelog/jabaws'>Git-tracker</a>
<pre><code class="bash">git clone http://source.jalview.org/git/jabaws.git</code></pre>
</li>
</ul>
</div>
<div class="panel-body">
<p class="justify">
- Choose the JABAWS distribution that better suits your needs and read the quickstart guides below.
- Detailed information is available in the <a href="${pageContext.request.contextPath}/man_docs.jsp">
- JABAWS documentation pages</a>.
+ Choose the JABAWS distribution that better suits your needs and read the <em>Getting Started</em> guides below.
+ Detailed information is available in the <a href="${pageContext.request.contextPath}/docs/index.html">
+ documentation pages</a>.
</p>
<br>
<div class="row">
<strong>public</strong> server</td>
</tr>
<tr>
- <td><a href="#va">JABAWS Virtual Appliance (VA)</a></td>
- <td>Running JABAWS services through Jalview on my
- computer with a <strong>private</strong> server</td>
+ <td><a href="#client">Command Line Interface (CLI)</a></td>
+ <td>Accessing a <strong>public</strong> or <strong>private</strong>
+ JABAWS server from my own software</td>
</tr>
<tr>
- <td><a href="#war">JABAWS Web Application aRchive (WAR)</a></td>
+ <td><a href="#war">Web Application aRchive (WAR)</a></td>
<td>Running JABAWS for my group, lab, or organization on the
<strong>local</strong> infrastructure</td>
</tr>
<tr>
- <td><a href="#client">JABAWS Command Line Interface (CLI)</a></td>
- <td>Accessing a <strong>public</strong> or <strong>private</strong>
- JABAWS server from my own software</td>
+ <td><a href="#va">Virtual Appliance (VA)</a></td>
+ <td>Running JABAWS services through Jalview on my
+ computer with a <strong>private</strong> server</td>
</tr>
+
</table>
</div>
<div class="col-md-2"></div>
</div>
</div>
</div>
-<div class="row" id="va">
+<div class="row" id="client">
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Virtual Appliance (VA)</h1>
+ <h1 class="panel-title">Command Line Interface (CLI)</h1>
</div>
<div class="panel-body">
- <!--<h4>Running JABAWS on your local machine</h4>-->
-
<p class="justify">
- The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a
- virtual machine on your laptop or desktop computer. A complete guide
- to the JABAWS VA is given in the <a href="${pageContext.request.contextPath}/man_servervm.jsp">documentation pages</a>,
- but for the impatient, brief instructions are given below:
- </p>
-
- <p class="justify">
- If you work on Windows, Linux or Unix:
+ This is a single Java archive which contains the JABAWS command line interface (CLI) client.
+ It allows anyone who wants to connect to the JABAWS web-services running at the
+ University of Dundee's Public Server, or to run a local private JABAWS server from their own software.
+ You can read more about how to use JABAWS command line (CLI) client given in the
+ <a href="docs/client.html">documentation pages</a>,
+ but a brief instructions are given below:
</p>
<ol>
- <li>Download <a href="${pageContext.request.contextPath}/download.jsp#va">JABAWS Virtual Appliance</a></li>
- <li>Download and install <a href="http://www.vmware.com/products/player">VMWare Player</a></li>
- <li>Unpack the JABAWS virtual appliance and open it with VMware Player</li>
+ <li>Download <a href="${pageContext.request.contextPath}/download.jsp#client">the Client Jar file</a></li>
+ <li>Download and install <a href="http://www.oracle.com/technetwork/java/javase/downloads/jre7-downloads-1880261.html">Java</a>
+ (version 1.7)</li>
+ <li>Provided that you have the Java ready to run, you can get command line help by changing to
+ the directory where you downloaded the client jar, and typing:<br/>
+ <pre><code class="bash">java -jar jaba-client.jar</code></pre>
+ </li>
</ol>
-
- <p class="justify">
- If you work on Mac do the same using
- <a href="http://www.vmware.com/products/fusion/overview.html">
- VMware Fusion</a>.
- </p>
-
- <p><strong>Testing</strong></p>
<p class="justify">
- To check that your JABAWS virtual appliance is working visit the Services Status
- page available from the main JABAWS menu. For this enter the JABAWS URL for your
- new server into a web browser. This is shown once the appliance is booted up.
- </p>
- <p class="justify">
- Alternatively you can use Jalview to complete the testing.
+ The JABA Web Services are WS-I compliant. This means that you can access them from any
+ language that has libraries or functions for consuming interoperable SOAP web services.
+ More information on how to develop software that access JABAWS services is provided in the
+ <a href="docs/develop.html#accessing-jabaws-from-your-program">documentation pages</a>.
+ <!-- TODO Provide list of libraries for different languages -->
</p>
- <ol>
- <li>Launch the desktop version of <a href="http://www.jalview.org/">Jalview</a></li>
- <li>Open the Jalview desktop's preferences panel (from the Tools->Preferences menu option), select the
- <em2>Webservices</em2> panel and press the
- <em2>New Service URL</em2> button.</li>
- <li>Enter the JABAWS URL for your new server. This is shown once the appliance is booted up.</li>
- </ol>
<p class="text-right">
<a href="#">Back to top <i class="fa fa-arrow-up" aria-hidden="true"></i></a>
</p>
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Web Application aRchive (WAR)</h1>
+ <h1 class="panel-title">Web Application aRchive (WAR)</h1>
</div>
<div class="panel-body">
The JABAWS Web Application aRchive (WAR) is for anyone who wants to run JABAWS for their group, lab or organization,
or wants to enable their local JABAWS server to use the cluster or perform very large tasks.
Complete documentation is provided in the
- <a href="man_serverwar.jsp">documentation pages</a>, but brief instructions are given below:
+ <a href="docs/war.html">documentation pages</a>, but brief instructions are given below:
</p>
<ol>
<li>Download the <a href="${pageContext.request.contextPath}/download.jsp#war">JABAWS WAR file</a></li>
- <li>Download and install <a href="http://tomcat.apache.org/download-70.cgi">Apache-Tomcat</a><br/>
+ <li>Download and install <a href="http://tomcat.apache.org/download-80.cgi">Apache-Tomcat</a><br/>
<em>You will need at least Tomcat version 5.5 of
- (we would recommend version 7.0) and at least Java 1.6 (i.e. JAVA 6).</em>
+ (we would recommend version 8.5) and at least Java 1.7 (i.e. JAVA 7).</em>
</li>
<li>Drop the JABAWS WAR file into <em2>tomcat/webapps</em2> directory.</li>
<li>(Re)start the Tomcat.</li>
<li>If you are working on the command line, then use the command line client shipped with the
JABAWS war to test it by running:
- <pre><code class="bash">java -jar <Path to tomcat WebApp directory>/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</code></pre>
+ <pre><code class="bash">java -jar <Path to tomcat WebApp directory>/jabaws/WEB-INF/lib/jabaws-client.jar -h=http://localhost:8080/jabaws</code></pre>
In this example we assumed that your JABAWS server URL is
<em2>http://localhost:8080</em2> and JABAWS context path is
<em2>jabaws</em2>
</div>
</div>
</div>
-<div class="row" id="client">
+<div class="row" id="va">
<div class="col-md-12">
<div class="panel panel-default">
<div class="panel panel-heading">
- <h1 class="panel-title">JABAWS Command Line Java Client</h1>
+ <h1 class="panel-title">Virtual Appliance (VA)</h1>
</div>
<div class="panel-body">
+ <!--<h4>Running JABAWS on your local machine</h4>-->
+
<p class="justify">
- This is a single Java archive which contains the JABAWS command line interface (CLI) client.
- It allows anyone who wants to connect to the JABAWS web-services running at the
- University of Dundee's Public Server, or to run a local private JABAWS server from their own software.
- You can read more about how to use JABAWS command line (CLI) client given in the
- <a href="man_client.jsp">documentation pages</a>,
- but a brief instructions are given below:
+ The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a
+ virtual machine on your laptop or desktop computer. A complete guide
+ to the JABAWS VA is given in the <a href="${pageContext.request.contextPath}/docs/va.html">documentation pages</a>,
+ but for the impatient, brief instructions are given below:
+ </p>
+
+ <p class="justify">
+ If you work on Windows, Linux or Unix:
</p>
<ol>
- <li>Download <a href="${pageContext.request.contextPath}/download.jsp#client">the Client Jar file</a></li>
- <li>Download and install <a href="http://www.oracle.com/technetwork/java/javase/downloads/java-archive-downloads-javase6-419409.html">Java</a>
- (version 1.6)</li>
- <li>Provided that you have the Java ready to run, you can get command line help by changing to
- the directory where you downloaded the client jar, and typing:<br/>
- <pre><code class="bash">java -jar jaba-client.jar</code></pre>
- </li>
+ <li>Download <a href="${pageContext.request.contextPath}/download.jsp#va">JABAWS Virtual Appliance</a></li>
+ <li>Download and install <a href="http://www.vmware.com/products/player">VMWare Player</a></li>
+ <li>Unpack the JABAWS virtual appliance and open it with VMware Player</li>
</ol>
+
<p class="justify">
- The JABA Web Services are WS-I compliant. This means that you can access them from any
- language that has libraries or functions for consuming interoperable SOAP web services.
- <!-- TODO Provide list of libraries for different languages -->
+ If you work on Mac do the same using
+ <a href="http://www.vmware.com/products/fusion/overview.html">
+ VMware Fusion</a>.
+ </p>
+
+ <p><strong>Testing</strong></p>
+ <p class="justify">
+ To check that your JABAWS virtual appliance is working visit the Services Status
+ page available from the main JABAWS menu. For this enter the JABAWS URL for your
+ new server into a web browser. This is shown once the appliance is booted up.
</p>
+ <p class="justify">
+ Alternatively you can use Jalview to complete the testing.
+ </p>
+ <ol>
+ <li>Launch the desktop version of <a href="http://www.jalview.org/">Jalview</a></li>
+ <li>Open the Jalview desktop's preferences panel (from the Tools->Preferences menu option), select the
+ <em2>Webservices</em2> panel and press the
+ <em2>New Service URL</em2> button.</li>
+ <li>Enter the JABAWS URL for your new server. This is shown once the appliance is booted up.</li>
+ </ol>
</div>
</div>
</div>
</p>
<p class="justify">
JABAWS web-services can be accessed through the <a href="http://www.jalview.org">Jalview</a> desktop
- graphical user interface (GUI) (version 2.8 onwards) or the command line interface (CLI) client.
+ graphical user interface (GUI) (version 2.8 onwards) or the JABAWS Command Line Interface (CLI) client.
In this way you can perform computations on your sequences using the publicly available servers
running at the University of Dundee. Alternatively, JABAWS installation allows you to perform analysis
limited only by your own computing resources, by running it in your local computer, server or cluster.
<div class="panel-body">
<p class="justify">
- You can access our public JABAWS web services with the
- <a href="${pageContext.request.contextPath}/getting_started.jsp#client">command line client</a>,
- <a href="http://www.jalview.org/">Jalview</a>,
- or with your own program. The latest versions of Jalview (version 2.9 or later) are fully compatible
+ You can access our public JABAWS web services with <a href="http://www.jalview.org/">Jalview</a>,
+ <a href="${pageContext.request.contextPath}/getting_started.jsp#client">JABAWS CLI</a>, or
+ <a href="${pageContext.request.contextPath}/docs/develop.html#accessing-jabaws-from-your-program">with your own program</a>.
+ The latest versions of Jalview (version 2.9 or later) are fully compatible
with JABAWS 2.2 and are configured to use the public JABAWS server by default.
</p>
<ul>
<li>The JABAWS public web services address is <strong><a href="http://www.compbio.dundee.ac.uk/jabaws">http://www.compbio.dundee.ac.uk/jabaws</a></strong> </li>
- <li>A detailed web services description is available from here:
+ <li>A detailed description of the JABAWS web services is available from here:
<a href="${pageContext.request.contextPath}/RegistryWS?"
title="${pageContext.request.contextPath}/RegistryWS?" rel=nofollow">WSDL List</a></li>
</ul>
<p class="justify">
These web services accept submissions of <strong>less than one thousand sequences</strong>.
Should you find this to be insufficient for your needs, or if you are concerned about privacy
- or on an unreliable network connection, then you can
- <a href="${pageContext.request.contextPath}/download.jsp">download</a> and
- run the JABAWS Server on your own hardware.
+ or you are on an unreliable network connection, then you can
+ download and
+ run the <a href="${pageContext.request.contextPath}/getting_started.jsp#war">JABAWS WAR</a> on your own hardware.
</p>
</div>
</div>
<p class="justify">
Peter V. Troshin, James B. Procter and Geoffrey J. Barton -
Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MS
- <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi: <a href="http://bioinformatics.oxfordjournals.org/content/early/2011/05/18/bioinformatics.btr304.abstract?keytype=ref&ijkey=gd0DwuYBzFRhe4T">
+ <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi: <a href="https://doi.org/10.1093/bioinformatics/btr304">
10.1093/bioinformatics/btr304</a>.
</p>
</div>
The summary for each column is displayed in the last row of the table.
</div> <!-- Help text enclosing dev end -->
<c:if test="${!isAdmin}">
- <br/><p><a href="AnnualStat">Please login as administrator</a> to view the detailed statistics (<a href=man_stats.html#helpUsageStats>help</a>)</p>
+ <br/><p><a href="AnnualStat">Please login as administrator</a> to view the detailed statistics (<a href=docs/stats.html>help</a>)</p>
</c:if>
</div><!-- margin div -->
<p>If you would like to integrate JABAWS with automated health check system you may want to use
the HTTP code response service checker. It responds with HTTP status code depending on the status
of the web service.
- For more information please refer to <a href="${pageContext.request.contextPath}/man_serverwar.jsp#usingWsTester">
+ For more information please refer to <a href="${pageContext.request.contextPath}/docs/advanced.html#testing-the-jabaws-server">
Testing JABAWS server</a> help page.</p>
</div><!-- margin div -->
</div>
git://source.jalview.org / jabaws.git / commitdiff