* JPredWS.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
public interface JPredWS extends java.rmi.Remote {
public java.lang.String predict(ext.vamsas.Sequence in0) throws java.rmi.RemoteException;
+ public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) throws java.rmi.RemoteException;
public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException;
+ public ext.vamsas.JpredResult getresult(java.lang.String in0) throws java.rmi.RemoteException;
}
* JPredWSService.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
* JPredWSServiceLocator.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
public class JPredWSServiceLocator extends org.apache.axis.client.Service implements ext.vamsas.JPredWSService {
+ public JPredWSServiceLocator() {
+ }
+
+
+ public JPredWSServiceLocator(org.apache.axis.EngineConfiguration config) {
+ super(config);
+ }
+
+ public JPredWSServiceLocator(java.lang.String wsdlLoc, javax.xml.namespace.QName sName) throws javax.xml.rpc.ServiceException {
+ super(wsdlLoc, sName);
+ }
+
// Use to get a proxy class for jpred
- private final java.lang.String jpred_address = "http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred";
+ private java.lang.String jpred_address = "http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred";
public java.lang.String getjpredAddress() {
return jpred_address;
}
}
+ public void setjpredEndpointAddress(java.lang.String address) {
+ jpred_address = address;
+ }
+
/**
* For the given interface, get the stub implementation.
* If this service has no port for the given interface,
if (portName == null) {
return getPort(serviceEndpointInterface);
}
- String inputPortName = portName.getLocalPart();
+ java.lang.String inputPortName = portName.getLocalPart();
if ("jpred".equals(inputPortName)) {
return getjpred();
}
public java.util.Iterator getPorts() {
if (ports == null) {
ports = new java.util.HashSet();
- ports.add(new javax.xml.namespace.QName("jpred"));
+ ports.add(new javax.xml.namespace.QName("vamsas", "jpred"));
}
return ports.iterator();
}
+ /**
+ * Set the endpoint address for the specified port name.
+ */
+ public void setEndpointAddress(java.lang.String portName, java.lang.String address) throws javax.xml.rpc.ServiceException {
+ if ("jpred".equals(portName)) {
+ setjpredEndpointAddress(address);
+ }
+ else { // Unknown Port Name
+ throw new javax.xml.rpc.ServiceException(" Cannot set Endpoint Address for Unknown Port" + portName);
+ }
+ }
+
+ /**
+ * Set the endpoint address for the specified port name.
+ */
+ public void setEndpointAddress(javax.xml.namespace.QName portName, java.lang.String address) throws javax.xml.rpc.ServiceException {
+ setEndpointAddress(portName.getLocalPart(), address);
+ }
+
}
--- /dev/null
+/**
+ * JpredResult.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class JpredResult extends ext.vamsas.Result implements java.io.Serializable {
+ private java.lang.String aligfile;
+ private java.lang.String predfile;
+
+ public JpredResult() {
+ }
+
+ public JpredResult(
+ java.lang.String aligfile,
+ java.lang.String predfile) {
+ this.aligfile = aligfile;
+ this.predfile = predfile;
+ }
+
+
+ /**
+ * Gets the aligfile value for this JpredResult.
+ *
+ * @return aligfile
+ */
+ public java.lang.String getAligfile() {
+ return aligfile;
+ }
+
+
+ /**
+ * Sets the aligfile value for this JpredResult.
+ *
+ * @param aligfile
+ */
+ public void setAligfile(java.lang.String aligfile) {
+ this.aligfile = aligfile;
+ }
+
+
+ /**
+ * Gets the predfile value for this JpredResult.
+ *
+ * @return predfile
+ */
+ public java.lang.String getPredfile() {
+ return predfile;
+ }
+
+
+ /**
+ * Sets the predfile value for this JpredResult.
+ *
+ * @param predfile
+ */
+ public void setPredfile(java.lang.String predfile) {
+ this.predfile = predfile;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof JpredResult)) return false;
+ JpredResult other = (JpredResult) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = super.equals(obj) &&
+ ((this.aligfile==null && other.getAligfile()==null) ||
+ (this.aligfile!=null &&
+ this.aligfile.equals(other.getAligfile()))) &&
+ ((this.predfile==null && other.getPredfile()==null) ||
+ (this.predfile!=null &&
+ this.predfile.equals(other.getPredfile())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = super.hashCode();
+ if (getAligfile() != null) {
+ _hashCode += getAligfile().hashCode();
+ }
+ if (getPredfile() != null) {
+ _hashCode += getPredfile().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(JpredResult.class, true);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("aligfile");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "aligfile"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("predfile");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "predfile"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
+ typeDesc.addFieldDesc(elemField);
+ }
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
* JpredSoapBindingStub.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
static org.apache.axis.description.OperationDesc [] _operations;
static {
- _operations = new org.apache.axis.description.OperationDesc[2];
+ _operations = new org.apache.axis.description.OperationDesc[4];
+ _initOperationDesc1();
+ }
+
+ private static void _initOperationDesc1(){
org.apache.axis.description.OperationDesc oper;
oper = new org.apache.axis.description.OperationDesc();
oper.setName("predict");
oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
oper.setReturnClass(java.lang.String.class);
oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictReturn"));
- oper.setStyle(org.apache.axis.enum.Style.WRAPPED);
- oper.setUse(org.apache.axis.enum.Use.LITERAL);
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
_operations[0] = oper;
oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("predictOnMsa");
+ oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"), ext.vamsas.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictOnMsaReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
oper.setName("getpredict");
oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"));
oper.setReturnClass(ext.vamsas.Secstructpred.class);
oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getpredictReturn"));
- oper.setStyle(org.apache.axis.enum.Style.WRAPPED);
- oper.setUse(org.apache.axis.enum.Use.LITERAL);
- _operations[1] = oper;
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[2] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getresult");
+ oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"));
+ oper.setReturnClass(ext.vamsas.JpredResult.class);
+ oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getresultReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[3] = oper;
}
} else {
super.service = service;
}
+ ((org.apache.axis.client.Service)super.service).setTypeMappingVersion("1.2");
java.lang.Class cls;
javax.xml.namespace.QName qName;
java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
- qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence");
+ java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment");
cachedSerQNames.add(qName);
- cls = ext.vamsas.Sequence.class;
+ cls = ext.vamsas.Msfalignment.class;
cachedSerClasses.add(cls);
cachedSerFactories.add(beansf);
cachedDeserFactories.add(beandf);
cachedSerFactories.add(beansf);
cachedDeserFactories.add(beandf);
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult");
+ cachedSerQNames.add(qName);
+ cls = ext.vamsas.JpredResult.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result");
+ cachedSerQNames.add(qName);
+ cls = ext.vamsas.Result.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence");
+ cachedSerQNames.add(qName);
+ cls = ext.vamsas.Sequence.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
}
- private org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
+ protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
try {
org.apache.axis.client.Call _call =
(org.apache.axis.client.Call) super.service.createCall();
java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
javax.xml.namespace.QName qName =
(javax.xml.namespace.QName) cachedSerQNames.get(i);
- java.lang.Class sf = (java.lang.Class)
+ java.lang.Object x = cachedSerFactories.get(i);
+ if (x instanceof Class) {
+ java.lang.Class sf = (java.lang.Class)
+ cachedSerFactories.get(i);
+ java.lang.Class df = (java.lang.Class)
+ cachedDeserFactories.get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ else if (x instanceof javax.xml.rpc.encoding.SerializerFactory) {
+ org.apache.axis.encoding.SerializerFactory sf = (org.apache.axis.encoding.SerializerFactory)
cachedSerFactories.get(i);
- java.lang.Class df = (java.lang.Class)
+ org.apache.axis.encoding.DeserializerFactory df = (org.apache.axis.encoding.DeserializerFactory)
cachedDeserFactories.get(i);
- _call.registerTypeMapping(cls, qName, sf, df, false);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
}
}
}
return _call;
}
- catch (java.lang.Throwable t) {
- throw new org.apache.axis.AxisFault("Failure trying to get the Call object", t);
+ catch (java.lang.Throwable _t) {
+ throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);
}
}
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+ try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
if (_resp instanceof java.rmi.RemoteException) {
throw (java.rmi.RemoteException)_resp;
return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
}
}
+ } catch (org.apache.axis.AxisFault axisFaultException) {
+ throw axisFaultException;
+}
}
- public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException {
+ public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) throws java.rmi.RemoteException {
if (super.cachedEndpoint == null) {
throw new org.apache.axis.NoEndPointException();
}
_call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
_call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
_call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predictOnMsa"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ } catch (org.apache.axis.AxisFault axisFaultException) {
+ throw axisFaultException;
+}
+ }
+
+ public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
_call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict"));
setRequestHeaders(_call);
setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+ try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
if (_resp instanceof java.rmi.RemoteException) {
throw (java.rmi.RemoteException)_resp;
return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.Secstructpred.class);
}
}
+ } catch (org.apache.axis.AxisFault axisFaultException) {
+ throw axisFaultException;
+}
+ }
+
+ public ext.vamsas.JpredResult getresult(java.lang.String in0) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[3]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ extractAttachments(_call);
+ try {
+ return (ext.vamsas.JpredResult) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.JpredResult.class);
+ }
+ }
+ } catch (org.apache.axis.AxisFault axisFaultException) {
+ throw axisFaultException;
+}
}
}
--- /dev/null
+/**
+ * Msfalignment.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class Msfalignment implements java.io.Serializable {
+ private java.lang.String msf;
+ private java.lang.String notes;
+
+ public Msfalignment() {
+ }
+
+ public Msfalignment(
+ java.lang.String msf,
+ java.lang.String notes) {
+ this.msf = msf;
+ this.notes = notes;
+ }
+
+
+ /**
+ * Gets the msf value for this Msfalignment.
+ *
+ * @return msf
+ */
+ public java.lang.String getMsf() {
+ return msf;
+ }
+
+
+ /**
+ * Sets the msf value for this Msfalignment.
+ *
+ * @param msf
+ */
+ public void setMsf(java.lang.String msf) {
+ this.msf = msf;
+ }
+
+
+ /**
+ * Gets the notes value for this Msfalignment.
+ *
+ * @return notes
+ */
+ public java.lang.String getNotes() {
+ return notes;
+ }
+
+
+ /**
+ * Sets the notes value for this Msfalignment.
+ *
+ * @param notes
+ */
+ public void setNotes(java.lang.String notes) {
+ this.notes = notes;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Msfalignment)) return false;
+ Msfalignment other = (Msfalignment) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((this.msf==null && other.getMsf()==null) ||
+ (this.msf!=null &&
+ this.msf.equals(other.getMsf()))) &&
+ ((this.notes==null && other.getNotes()==null) ||
+ (this.notes!=null &&
+ this.notes.equals(other.getNotes())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getMsf() != null) {
+ _hashCode += getMsf().hashCode();
+ }
+ if (getNotes() != null) {
+ _hashCode += getNotes().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Msfalignment.class, true);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("msf");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "msf"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("notes");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "notes"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
+ typeDesc.addFieldDesc(elemField);
+ }
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
--- /dev/null
+/**
+ * Result.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
+ */
+
+package ext.vamsas;
+
+public class Result implements java.io.Serializable {
+ private boolean broken;
+ private boolean failed;
+ private boolean finished;
+ private boolean invalid;
+ private boolean jobFailed;
+ private boolean queued;
+ private boolean running;
+ private boolean serverError;
+ private int state;
+ private java.lang.String status;
+ private boolean suspended;
+
+ public Result() {
+ }
+
+ public Result(
+ boolean broken,
+ boolean failed,
+ boolean finished,
+ boolean invalid,
+ boolean jobFailed,
+ boolean queued,
+ boolean running,
+ boolean serverError,
+ int state,
+ java.lang.String status,
+ boolean suspended) {
+ this.broken = broken;
+ this.failed = failed;
+ this.finished = finished;
+ this.invalid = invalid;
+ this.jobFailed = jobFailed;
+ this.queued = queued;
+ this.running = running;
+ this.serverError = serverError;
+ this.state = state;
+ this.status = status;
+ this.suspended = suspended;
+ }
+
+
+ /**
+ * Gets the broken value for this Result.
+ *
+ * @return broken
+ */
+ public boolean isBroken() {
+ return broken;
+ }
+
+
+ /**
+ * Sets the broken value for this Result.
+ *
+ * @param broken
+ */
+ public void setBroken(boolean broken) {
+ this.broken = broken;
+ }
+
+
+ /**
+ * Gets the failed value for this Result.
+ *
+ * @return failed
+ */
+ public boolean isFailed() {
+ return failed;
+ }
+
+
+ /**
+ * Sets the failed value for this Result.
+ *
+ * @param failed
+ */
+ public void setFailed(boolean failed) {
+ this.failed = failed;
+ }
+
+
+ /**
+ * Gets the finished value for this Result.
+ *
+ * @return finished
+ */
+ public boolean isFinished() {
+ return finished;
+ }
+
+
+ /**
+ * Sets the finished value for this Result.
+ *
+ * @param finished
+ */
+ public void setFinished(boolean finished) {
+ this.finished = finished;
+ }
+
+
+ /**
+ * Gets the invalid value for this Result.
+ *
+ * @return invalid
+ */
+ public boolean isInvalid() {
+ return invalid;
+ }
+
+
+ /**
+ * Sets the invalid value for this Result.
+ *
+ * @param invalid
+ */
+ public void setInvalid(boolean invalid) {
+ this.invalid = invalid;
+ }
+
+
+ /**
+ * Gets the jobFailed value for this Result.
+ *
+ * @return jobFailed
+ */
+ public boolean isJobFailed() {
+ return jobFailed;
+ }
+
+
+ /**
+ * Sets the jobFailed value for this Result.
+ *
+ * @param jobFailed
+ */
+ public void setJobFailed(boolean jobFailed) {
+ this.jobFailed = jobFailed;
+ }
+
+
+ /**
+ * Gets the queued value for this Result.
+ *
+ * @return queued
+ */
+ public boolean isQueued() {
+ return queued;
+ }
+
+
+ /**
+ * Sets the queued value for this Result.
+ *
+ * @param queued
+ */
+ public void setQueued(boolean queued) {
+ this.queued = queued;
+ }
+
+
+ /**
+ * Gets the running value for this Result.
+ *
+ * @return running
+ */
+ public boolean isRunning() {
+ return running;
+ }
+
+
+ /**
+ * Sets the running value for this Result.
+ *
+ * @param running
+ */
+ public void setRunning(boolean running) {
+ this.running = running;
+ }
+
+
+ /**
+ * Gets the serverError value for this Result.
+ *
+ * @return serverError
+ */
+ public boolean isServerError() {
+ return serverError;
+ }
+
+
+ /**
+ * Sets the serverError value for this Result.
+ *
+ * @param serverError
+ */
+ public void setServerError(boolean serverError) {
+ this.serverError = serverError;
+ }
+
+
+ /**
+ * Gets the state value for this Result.
+ *
+ * @return state
+ */
+ public int getState() {
+ return state;
+ }
+
+
+ /**
+ * Sets the state value for this Result.
+ *
+ * @param state
+ */
+ public void setState(int state) {
+ this.state = state;
+ }
+
+
+ /**
+ * Gets the status value for this Result.
+ *
+ * @return status
+ */
+ public java.lang.String getStatus() {
+ return status;
+ }
+
+
+ /**
+ * Sets the status value for this Result.
+ *
+ * @param status
+ */
+ public void setStatus(java.lang.String status) {
+ this.status = status;
+ }
+
+
+ /**
+ * Gets the suspended value for this Result.
+ *
+ * @return suspended
+ */
+ public boolean isSuspended() {
+ return suspended;
+ }
+
+
+ /**
+ * Sets the suspended value for this Result.
+ *
+ * @param suspended
+ */
+ public void setSuspended(boolean suspended) {
+ this.suspended = suspended;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Result)) return false;
+ Result other = (Result) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ this.broken == other.isBroken() &&
+ this.failed == other.isFailed() &&
+ this.finished == other.isFinished() &&
+ this.invalid == other.isInvalid() &&
+ this.jobFailed == other.isJobFailed() &&
+ this.queued == other.isQueued() &&
+ this.running == other.isRunning() &&
+ this.serverError == other.isServerError() &&
+ this.state == other.getState() &&
+ ((this.status==null && other.getStatus()==null) ||
+ (this.status!=null &&
+ this.status.equals(other.getStatus()))) &&
+ this.suspended == other.isSuspended();
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ _hashCode += (isBroken() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isFinished() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isInvalid() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isJobFailed() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isQueued() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isRunning() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += (isServerError() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ _hashCode += getState();
+ if (getStatus() != null) {
+ _hashCode += getStatus().hashCode();
+ }
+ _hashCode += (isSuspended() ? Boolean.TRUE : Boolean.FALSE).hashCode();
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Result.class, true);
+
+ static {
+ typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result"));
+ org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("broken");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "broken"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("failed");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "failed"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("finished");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "finished"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("invalid");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "invalid"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("jobFailed");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "jobFailed"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("queued");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "queued"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("running");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "running"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("serverError");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "serverError"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("state");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "state"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("status");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "status"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
+ typeDesc.addFieldDesc(elemField);
+ elemField = new org.apache.axis.description.ElementDesc();
+ elemField.setFieldName("suspended");
+ elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "suspended"));
+ elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(elemField);
+ }
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
* Secstructpred.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
public Secstructpred() {
}
+ public Secstructpred(
+ java.lang.String output) {
+ this.output = output;
+ }
+
+
+ /**
+ * Gets the output value for this Secstructpred.
+ *
+ * @return output
+ */
public java.lang.String getOutput() {
return output;
}
+
+ /**
+ * Sets the output value for this Secstructpred.
+ *
+ * @param output
+ */
public void setOutput(java.lang.String output) {
this.output = output;
}
// Type metadata
private static org.apache.axis.description.TypeDesc typeDesc =
- new org.apache.axis.description.TypeDesc(Secstructpred.class);
+ new org.apache.axis.description.TypeDesc(Secstructpred.class, true);
static {
typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"));
elemField.setFieldName("output");
elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "output"));
elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
typeDesc.addFieldDesc(elemField);
}
* Sequence.java
*
* This file was auto-generated from WSDL
- * by the Apache Axis WSDL2Java emitter.
+ * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter.
*/
package ext.vamsas;
public Sequence() {
}
+ public Sequence(
+ java.lang.String id,
+ java.lang.String seq) {
+ this.id = id;
+ this.seq = seq;
+ }
+
+
+ /**
+ * Gets the id value for this Sequence.
+ *
+ * @return id
+ */
public java.lang.String getId() {
return id;
}
+
+ /**
+ * Sets the id value for this Sequence.
+ *
+ * @param id
+ */
public void setId(java.lang.String id) {
this.id = id;
}
+
+ /**
+ * Gets the seq value for this Sequence.
+ *
+ * @return seq
+ */
public java.lang.String getSeq() {
return seq;
}
+
+ /**
+ * Sets the seq value for this Sequence.
+ *
+ * @param seq
+ */
public void setSeq(java.lang.String seq) {
this.seq = seq;
}
// Type metadata
private static org.apache.axis.description.TypeDesc typeDesc =
- new org.apache.axis.description.TypeDesc(Sequence.class);
+ new org.apache.axis.description.TypeDesc(Sequence.class, true);
static {
typeDesc.setXmlType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"));
elemField.setFieldName("id");
elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "id"));
elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
typeDesc.addFieldDesc(elemField);
elemField = new org.apache.axis.description.ElementDesc();
elemField.setFieldName("seq");
elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "seq"));
elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ elemField.setNillable(true);
typeDesc.addFieldDesc(elemField);
}
git://source.jalview.org / jalview.git / commitdiff