Workaround for JWS-61 that resolves JAL-1127

diff --git a/conf/settings/AAConPresets.xml b/conf/settings/AAConPresets.xml
index cdf8d37..2924525 100644 (file)
--- a/conf/settings/AAConPresets.xml
+++ b/conf/settings/AAConPresets.xml
@@ -5,21 +5,21 @@
                <name>Quick conservation</name>\r
                <description>Collection of fast conservation methods</description>\r
                <optlist>\r
-                       <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>\r
+                       <option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option>\r
                </optlist>\r
        </preset>\r
        <preset>\r
                <name>Slow conservation</name>\r
                <description>Collection of most expensive (slow) conservation methods</description>\r
                <optlist>\r
-                       <option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
+                       <option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>\r
                </optlist>\r
        </preset>\r
        <preset>\r
                <name>Complete conservation</name>\r
                <description>Calculate conservation with all supported methods</description>\r
                <optlist>\r
-                       <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>\r
+                       <option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option><option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>\r
                </optlist>\r
        </preset>\r
 </presets>\r