<servlet-name>ServiceStatus</servlet-name>\r
<servlet-class>compbio.stat.servlet.ServiceStatus</servlet-class>\r
</servlet>\r
+\r
+ <servlet>\r
+ <servlet-name>DownloadRedirector</servlet-name>\r
+ <servlet-class>compbio.stat.servlet.DownloadRedirector</servlet-class>\r
+ </servlet>\r
\r
<servlet>\r
<description>WebService Status with no UI. Accepts web service name as a parameter</description>\r
<servlet-name>listings</servlet-name>\r
<url-pattern>/</url-pattern>\r
</servlet-mapping>\r
+ \r
\r
<servlet-mapping>\r
+ <servlet-name>DownloadRedirector</servlet-name>\r
+ <url-pattern>/download</url-pattern>\r
+ </servlet-mapping>\r
+ \r
+ <servlet-mapping>\r
<servlet-name>DisplayStat</servlet-name>\r
<url-pattern>/DisplayStat</url-pattern>\r
</servlet-mapping>\r
--- /dev/null
+package compbio.stat.servlet;\r
+\r
+import java.io.IOException;\r
+\r
+import javax.servlet.ServletException;\r
+import javax.servlet.http.HttpServlet;\r
+import javax.servlet.http.HttpServletRequest;\r
+import javax.servlet.http.HttpServletResponse;\r
+\r
+public class DownloadRedirector extends HttpServlet {\r
+\r
+ @Override\r
+ protected void doGet(HttpServletRequest req, HttpServletResponse resp)\r
+ throws ServletException, IOException {\r
+ resp.sendRedirect("http://www.compbio.dundee.ac.uk/download");\r
+ }\r
+ @Override\r
+ protected void doPost(HttpServletRequest req, HttpServletResponse resp)\r
+ throws ServletException, IOException {\r
+ doGet(req, resp);\r
+ }\r
+\r
+}\r
<div id="panel"><a href="index.html">Home</a> \r
<a href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a class="selected" href="contacts.html">Contact Us</a>\r
+++ /dev/null
-<?xml version="1.0" encoding="UTF-8"?>\r
-<!DOCTYPE html PUBLIC "XHTML 1.0 Strict"\r
-"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">\r
-<html xmlns="http://www.w3.org/1999/xhtml">\r
-<head>\r
-<meta http-equiv="Content-Type" content=\r
-"text/html; charset=iso-8859-1" />\r
-<meta name="Last-modified" content="Mon, 7 Apr 2011 18:00:00 GMT"/>\r
-<title>Java Bioinformatics Analysis Web Services (JABAWS) download\r
-page</title>\r
-<link href="ws.css" rel="stylesheet" type="text/css" />\r
-<script type="text/javascript" src="prototype-1.6.0.3.js">\r
- \r
-</script>\r
-</head>\r
-<body>\r
-<div id="page">\r
-<div id="banner">\r
-<table> \r
-<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" alt="University of Dundee" width="158" height="90" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
-<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
-</tr>\r
-</table>\r
-</div>\r
-\r
-<!-- banner end-->\r
-<div id="wrapper">\r
-<div id="panel"><a href="index.html">Home</a> \r
-<a href="quick_start.html">Getting Started</a> \r
-<a href="man_about.html">Manual</a> \r
-<a class="selected" href="download.html">Download</a> \r
-<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
- <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
-<a href="contacts.html">Contact Us</a>\r
-<a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
-</div>\r
-\r
-<!-- panel end-->\r
-<div id="content">\r
- <h2 id="headtitle" style="text-align:left">JABAWS Server Virtual Appliance </h2>\r
- <p><span style="text-align:left">JABAWS virtual machine is a way of running fully functional JABA Web Services on your own computer. To use virtual machine (VM) you have to install a software for running it. We would recommend <a href="http://www.vmware.com/products/player">VMWare Player</a> for Windows and Linux users or <a href="http://www.vmware.com/products/fusion/overview.html">VMware Fusion</a> for Mac users. <a href="http://www.jalview.org/download.html">Jalview</a></span> can <a href="man_servervm.html#jalviewWithJaba">use your local JABAWS VA</a>. </p>\r
- <ul>\r
- <li> JABAWS Virtual Appliance: <a href="archive/jabaws-vm.zip">download</a> (520M)</li>\r
- </ul>\r
- <p>Please check out our <a href="man_servervm.html#whenvm">manual</a> for the detailed instructions. </p>\r
-\r
-\r
-<h2><a name="jabawswar" id="jabawswar"></a>JABAWS Server Web Application </h2>\r
-<p> The JABAWS Server Web Application aRchive (WAR) version is for you if you want to deploy JABAWS for many users e.g. your laboratory or if you are an expert user and want to have more control on JABAWS. You can also use this version for Mac and Linux computers if you do not want to use virtualization. Finally, you can use this version with a cluster. <br/>\r
- The server is provided as a self-contained <a href="http://en.wikipedia.org/wiki/WAR_(Sun_file_format)">Web Application\r
- aRchive (WAR) </a> containing all necessary binaries. WAR file can be deployed on any\r
- web application server\r
- <!-- Note - mention servlet 2.4 compliance here? -->\r
- supporting at the Java servlet specification v. 2.4 or above, i.e. <a href="http://tomcat.apache.org/download-60.cgi">Tomcat 7.0</a>. </p>\r
-<ul>\r
-<li>A JABAWS WAR for all platforms (comes with precompiled Linux x86 and Windows binaries): <a href=\r
-"archive/jaba.war">download</a>\r
-(55M)</li>\r
-<li>A JABAWS WAR for Mac (comes with precompiled Mac binaries): <a href=\r
-"archive/jabaws.war">download</a> (51M)</li>\r
-</ul>\r
-\r
-\r
-<p>Please bear in mind that if you deploy JABAWS WAR on Windows, not all web services will be functional. Use the JABAWS Server VA package instead. \r
- <!-- content end-->\r
-</p>\r
-\r
-<h2> <a name="minclient" id="minclient"></a>JABAWS Command Line Client </h2>\r
-<p>The command line client is an executable Java program for scripting against JABA web services. Its also useful as an example of how to access JABAWS services if you intend to use JABAWS in your own program, with functions demonstrating how to discover command line parameters and presets supported by a service, and how to run, monitor and retrieve the results of a job. <em>Note: The client is used in the <a href="http://www.jalview.org/source/jalview_2_6_1.tar.gz">Jalview 2.6.1 source code</a> to autogenerate a graphical user interface for JABA services.</em></p>\r
-<ul>\r
- <li>Command line client\r
- <ul>\r
- <li>binaries: <a href=\r
-"archive/min-jaba-client-2.0.jar">download</a> (80 K)</li>\r
- <li>source: <a href=\r
-"archive/jaba-client-src-2.0.jar">download</a> (70 K)</li>\r
- </ul>\r
- </li>\r
-</ul>\r
-<p>The command line client will display help documentation if it is run with no arguments, the same information is also given in <a href="man_client.html#usingcclient">the command line client's manual page</a>. </p>\r
-<h2>Version </h2>\r
-<p>Current JABAWS version is 2.0 release date 15 August 2011. </p>\r
-<div class="source">\r
-<div class="header collapsed" onclick=\r
-"$(this).toggleClassName('collapsed'); $(this).next('.body').toggleClassName('collapsed');"\r
- title="Click to open/close">The Source Code</div>\r
-\r
-<div class="body collapsed">\r
-<h2>The Complete Source Code</h2>\r
-<p>If you want to add another web service or modify JABAWS in any way just download a complete JABAWS source code. We offer the code under <a href=\r
-"http://www.apache.org/licenses/LICENSE-2.0.txt">Apache licence</a>. The code archive contains the complete <a href=\r
-"http://www.eclipse.org">Eclipse</a> JABAWS project, but Eclipse is not\r
- necessary to build it. Please examine the Ant build file (build.xml)\r
- to build and test JABAWS from sources.</p>\r
-<ul>\r
- <li>A complete Eclipse project package: <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-project.zip">download</a> (82M)</li>\r
- <li>JABAWS source only package: <a href=\r
-"archive/jabaws-src-2.0.jar">download</a> (250K)</li>\r
- </ul>\r
-\r
-<!--body end -->\r
-</div>\r
-\r
-<!--source end -->\r
-</div>\r
-\r
-</div>\r
-<!-- wrapper end-->\r
-<div id="copyright">Last update: 16 September 2011<br />\r
- Peter Troshin and Geoff Barton, The Barton Group, University of\r
-Dundee, UK</div>\r
-\r
-</div><!-- page end-->\r
-<!-- Google analitics -->\r
-<script type="text/javascript">\r
-var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");\r
-document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));\r
-</script>\r
-<script type="text/javascript">\r
-try{\r
-var pageTracker = _gat._getTracker("UA-5356328-1");\r
-pageTracker._trackPageview();\r
-} catch(err) {}\r
-</script>\r
-</div>\r
-</body>\r
-</html>\r
-\r
<a class="selected" href="index.html">Home</a> \r
<a href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a> \r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<div class="brick"> \r
<div class="brick_header"><h2>For Users</h2></div>\r
<div class="brick_content">\r
- <strong>The Server: </strong><a href="http://www.compbio.dundee.ac.uk/jabaws/archive/jabaws-vm.zip">JABAWS Virtual Appliance:</a> (520M)\r
+ <strong>The Server: </strong><a href="http://www.compbio.dundee.ac.uk/download/get?id=jabaws-vm.zip">JABAWS Virtual Appliance:</a> (520M)\r
or <a href="man_awscloud.html">use JABAWS on Amazon Webservices Cloud</a><br/>\r
<strong>The Client: </strong><a href="http://www.jalview.org/download.html">Jalview</a> (18M)\r
<p>To use JABA Web Services on most operating systems, just download and <a href="manual_qs_va.html#qsc">install</a> the JABAWS Virtual Appliance (VA) or even easier - just start JABAWS machine on the cloud and point Jalview at it!</p>\r
<div class="brick_header"><h2>For System Administrators</h2></div>\r
<div class="brick_content">\r
<p><strong>The Server: </strong><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (55M) </p>\r
+"http://www.compbio.dundee.ac.uk/download/get?id=jabaws.war">JABAWS Web Application aRchive</a> (55M) </p>\r
<p>JABAWS requires a Servlet 2.4 compatible servlet container like Apache-Tomcat to run. Please check the quick start guide for <a href="manual_qs_war.html#qsc">installation instructions</a>.</p>\r
</div>\r
</div></td>\r
<div class="brick_header"><h2>For Bioinformaticians/Developers</h2></div>\r
<div class="brick_content">\r
<strong>The Server: </strong><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (55M)\r
+"http://www.compbio.dundee.ac.uk/download/get?id=jabaws.war">JABAWS Web Application aRchive</a> (55M)\r
<br/>\r
<strong>The Client: </strong>\r
- Command Line Client <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client-2.0.jar">binary</a> | <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-client-source-2.0.jar">source</a> \r
+ Command Line Client <a href="http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">binary</a> | <a href=\r
+"http://www.compbio.dundee.ac.uk/download/get?id=jaba-client-source-2.0.jar">source</a> \r
<!-- <li><a href="http://www.jalview.org/download.html">Jalview</a> (18M)</li> -->\r
\r
\r
</div>\r
\r
<h3 style="margin:0;">Public JABAWS Server</h3>\r
-<p> You can access our public JABA Web Services with our <a href="download.html">command line client</a>, <a href="http://www.jalview.org/download.html">Jalview</a>, or with your own program. Jalview is configured to use this public JABAWS server by default.<br/></p>\r
+<p> You can access our public JABA Web Services with our <a href="http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">command line client</a>, <a href="http://www.jalview.org/download.html">Jalview</a>, or with your own program. Jalview is configured to use this public JABAWS server by default.<br/></p>\r
<ul>\r
<li>The JABAWS public web services address is <strong>http://www.compbio.dundee.ac.uk/jabaws</strong> </li>\r
<li>A detailed web services description is available from here: <a href="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?"\r
title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel=\r
"nofollow">WSDL List</a></li>\r
</ul>\r
-<p>These web services will reject submissions containing more then one thousand sequences. Should you find this to be insufficient for your needs, or if you are concerned about privacy or on an unreliable network connection, then you can <a href="download.html">download</a> and run the JABAWS Server on your own hardware.</p>\r
+<p>These web services will reject submissions containing more then one thousand sequences. Should you find this to be insufficient for your needs, or if you are concerned about privacy or on an unreliable network connection, then you can <a href="http://www.compbio.dundee.ac.uk/download">download</a> and run the JABAWS Server on your own hardware.</p>\r
\r
\r
<h3>Reference</h3>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
- <a href="download.html">Download</a>\r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
any programming language or system that can utilize standard SOAP web services. \r
The WSDL for each service is published on the JABAWS home page, and you can use this to automatically generate \r
service bindings for your program. If you use Java, however, then you may wish to use our \r
-<a href="download.html#minclient">client package</a> to access JABAWS. \r
+<a href="http://www.compbio.dundee.ac.uk/download">client package</a> to access JABAWS. \r
This package is based on the autogenerated source code produced by <span class="hightlight">wsimport</span>, which is the Java tool for creating web service bindings; \r
but in addition, offers some additional methods which simplify working with JABAWS. For more information please refer to the \r
<a href="dm_javadoc/index.html">data model javadoc</a>.\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<h2 id="headtitle">JABAWS MANUAL</h2>\r
\r
<h2><a name="usingcclient" id="usingcclient"></a>JABAWS Command Line Client Usage </h2>\r
-<p>The command line client comes as a part of <a href="download.html"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
+<p>The command line client comes as a part of <a href="http://www.compbio.dundee.ac.uk/download"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
<span class="code"><strong>Usage:</strong> java -jar <path_to_jar_file> -h=host_and_context -s=serviceName ACTION [OPTIONS]<br />\r
-h=<host_and_context> - a full URL to the JABAWS web server including context path e.g. http://10.31.10.159:8080/ws<br />\r
-s=<ServiceName> - one of [MafftWS, MuscleWS, ClustalWS, ClustalOWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS, IUPredWS]\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<p>Additional utility libraries this client depend upon is the compbio-util-1.3.jar and compbio-annotation-1.0.jar. <br />\r
Please refer to a <a href="dm_javadoc/index.html">data model javadoc</a> for a detailed description of each class and its methods. </p>\r
<h3><a name="connectto" id="connectto"></a>Connecting to JABAWS</h3>\r
-<p class="attention">For a complete working example of JABAWS command line client please see compbio.ws.client.Jws2Client class. JABAWS command line client source code is available from the <a href="download.html">download page</a>. Please note that for now all the examples are in Java other languages will follow given a sufficient demand. </p>\r
+<p class="attention">For a complete working example of JABAWS command line client please see compbio.ws.client.Jws2Client class. JABAWS command line client source code is available from the <a href="http://www.compbio.dundee.ac.uk/download">download page</a>. Please note that for now all the examples are in Java other languages will follow given a sufficient demand. </p>\r
<p>Download a binary JABAWS client. Add the client to the class path. The following code excerpt will connect your program to Clustal web service deployed in the University of Dundee. </p>\r
<p class="code"> import java.net.URL;<br />\r
import javax.xml.namespace.QName;<br />\r
FileOutputStream outStream = new FileOutputStream(file);<br />\r
ClustalAlignmentUtil.writeClustalAlignment(outStream, align);</span></p>\r
<h3><a name="compex" id="compex"></a>A complete client example </h3>\r
-<p>Finally, a complete example of the program that connects to JABAWS Clustal service and aligns sequences using one of the Clustal web service preset. Three is also a <a href="Example_template.pdf">PDF version</a> of this example with syntax highlighted. The text comments are commented by block style comments e.g. /* comment */, the alternatives given in the code are line commented // comment. You may want to remove line style comments to test alternatives of the functions. All you need for this to work is a <a href="download.html">JABAWS binary client</a>. Please make sure that the client is in the Java class path before running this example.</p>\r
+<p>Finally, a complete example of the program that connects to JABAWS Clustal service and aligns sequences using one of the Clustal web service preset. Three is also a <a href="Example_template.pdf">PDF version</a> of this example with syntax highlighted. The text comments are commented by block style comments e.g. /* comment */, the alternatives given in the code are line commented // comment. You may want to remove line style comments to test alternatives of the functions. All you need for this to work is a <a href="http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">JABAWS binary client</a>. Please make sure that the client is in the Java class path before running this example.</p>\r
<pre class="code" style="line-height:1em;">\r
import java.io.ByteArrayInputStream;\r
import java.io.FileNotFoundException;\r
JABAWS</a> \r
<a class="selected" href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
JABAWS</a> \r
<a href="man_server_dev.html" >JABAWS Development</a>\r
</div>\r
-<a href="download.html">Download</a> \r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<a href="index.html">Home</a>\r
<a class="selected" href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a>\r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<a name="qsc"/>\r
<h3><a name="client"/>The JABAWS command line client</h3>\r
<ul><li><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client.jar">Download the Client Jar</a> (80 K)</li>\r
+"http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">Download the Client Jar</a> (80 K)</li>\r
</ul>\r
<p>This is a single java archive which contains the JABAWS command line client. \r
It requires Java version 1.6 to run, and allows anyone who wants to connect \r
<a href="index.html">Home</a>\r
<a class="selected" href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a>\r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
\r
<a name="qsc"/>\r
<h3>Running JABAWS on your local machine</h3>\r
-<ul> <li>Download <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/jabaws-vm.zip">JABAWS Virtual Appliance</a> (520M) </li>\r
+<ul> <li>Download <a href="http://www.compbio.dundee.ac.uk/download/get?id=jabaws-vm.zip">JABAWS Virtual Appliance</a> (520M) </li>\r
</ul>\r
<p>The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a virtual machine on your laptop or desktop computer. A <a href="man_servervm.html#whenvm">complete guide to the JABAWS VA</a> is given in the manual, but for the impatient, a brief instructions are given below:\r
\r
<a href="index.html">Home</a>\r
<a class="selected" href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a>\r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
<p>This is for anyone who wants to run JABAWS for their group, lab or organization, or wants to enable their local JABA server to use the cluster or perform very large tasks.</p>\r
\r
<ol>\r
-<li>Download the <a href="http://www.compbio.dundee.ac.uk/jabaws/download.html">JABAWS WAR for your platform </a></li>\r
+<li>Download the <a href="http://www.compbio.dundee.ac.uk/download">JABAWS WAR for your platform </a></li>\r
<li>Download and install <a href="http://tomcat.apache.org/download-70.cgi">Apache-Tomcat</a>.<br/>\r
<span class="hightlight">You will need at least version 5.5 of Tomcat (we would recommend version 7.0) and at least version 1.6 (i.e. JAVA 6) of Java.</span></li>\r
<li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
<a href="index.html">Home</a>\r
<a class="selected" href="quick_start.html">Getting Started</a> \r
<a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a>\r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
<a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a href="contacts.html">Contact Us</a>\r
git://source.jalview.org / jabaws.git / commitdiff