=head1 SYNOPSIS
-./jpred.pl -in/-sequence <FILE1> [-outfile <FILE2>] [-logfile <FILE3>] [-output <FILEPREFIX>] [-dbname <DBNAME>] [-dbpath <PATH>] [-ncpu NNN] [-psi <psiblast output>] [-pred-nohits] [-no-final] [-jabaws] [-verbose] [-debug] [-help] [-man]
+./jpred.pl -in <FILE1> [-outfile <FILE2>] [-logfile <FILE3>] [-output <FILEPREFIX>] [-dbname <DBNAME>] [-dbpath <PATH>] [-ncpu NNN] [-psi <psiblast output>] [-seq] [-pred-nohits] [-no-final] [-jabaws] [-verbose] [-debug] [-help] [-man]
=head1 DESCRIPTION
-This is a program which predicts the secondary structure of a protein sequence given a path to a
-FASTA sequence. It does all the PSI-BLAST searching and alignment 'meddling' as required by Jnet.
-
-The program is primarily design for use by the Jpred server, but it can be used directly by any user.
-Some of the output may not be meaningful if used directly - it can be safely ignored.
+This is a program for predicting the secondary structure of a multiple sequence alignment (by default) or a protein sequence
+(with the -seq option). The input file can be stored in 3 formats: FASTA, MSF, or BLC.
+For the single sequence the program does all the PSI-BLAST searching, preparing PSSM and HMM profiles and predicting the
+secondary structure with Jnet. For the multiple sequence alignment only the HMM profile, created from the alignment, is used in Jnet.
=head1 OPTIONS
=over 5
-=item -in/-sequence <FILE1>
+=item -in <FILE1>
+
+The path to the sequence file (in FASTA, MSF, or BLC format)
-The path to the sequence file (in FASTA format) you want to predict.
+=item -seq
+
+The input file is a FASTA file with one sequence only.
=item -output <FILEPREFIX>
use Data::Dumper;
use File::Temp;
-#use UNIVERSAL;
-
# path to Jpred modules
use FindBin qw($Bin);
use lib "$Bin/lib";
# internal jpred modules
use Jpred;
-use Paths qw($pairwise $oc $jnet $hmmbuild $hmmconvert $psiblastbin check_OS setup_env);
+use Paths qw($pairwise $oc $jnet $hmmbuild $hmmconvert $psiblastbin $alscript $readseq check_OS setup_env);
use HMMER::Profile;
use HMMER::Profile::Jnet;
use PSIBLAST;
#####################################################################################################
my $infile;
+my $infastafile;
+my $format;
+my $goal = "align";
+my $seqgoal;
my $outfile;
my $prefix;
my $psiblast;
my $jabaws;
my $logfile;
-my $ncpu = 1; # number of CPUs for psiblast calculations
-my $predNoHits = 0; # define whether to make predictions when no PSI-BLAST hits are found
+my $ncpu = 1; # number of CPUs for psiblast calculations
+my $predNoHits = 0; # define whether to make predictions when no PSI-BLAST hits are found
my $db_path = "/homes/www-jpred/databases";
my $db_entry = "cluster";
my $nofinal;
my ( $help, $man, $DEBUG, $VERBOSE );
GetOptions(
- "in|sequence=s" => \$infile,
- "output=s" => \$prefix,
- "outfile=s" => \$outfile,
- "logfile=s" => \$logfile,
- "psi=s" => \$psiblast,
- "dbname=s" => \$db_entry,
- "dbpath=s" => \$db_path,
- "ncpu=s" => \$ncpu,
- "pred-nohits" => \$predNoHits,
- "no-final" => \$nofinal,
- "jabaws" => \$jabaws,
- "help" => \$help,
- "man" => \$man,
- "debug" => \$DEBUG,
- "verbose" => \$VERBOSE
+ "in=s" => \$infile,
+ "output=s" => \$prefix,
+ "outfile=s" => \$outfile,
+ "logfile=s" => \$logfile,
+ "psi=s" => \$psiblast,
+ "dbname=s" => \$db_entry,
+ "dbpath=s" => \$db_path,
+ "ncpu=s" => \$ncpu,
+ "pred-nohits" => \$predNoHits,
+ "no-final" => \$nofinal,
+ "seq" => \$seqgoal,
+ "jabaws" => \$jabaws,
+
+ "help" => \$help,
+ "man" => \$man,
+ "debug" => \$DEBUG,
+ "verbose" => \$VERBOSE
) or pod2usage(2);
pod2usage(1) if $help;
pod2usage( verbose => 2 ) if $man;
+$goal = "seq" if ( defined $seqgoal );
+
#####################################################################################################
# Key to database information and information for accessing them
-if (defined $jabaws) {
- $db_path = "/data/UNIREFdb";
- $db_entry = "cluster";
+if ( defined $jabaws ) {
+ $db_path = "/data/UNIREFdb";
+ $db_entry = "cluster";
}
my $database = {
};
my $dp = $database->{$db_entry}{database};
-pod2usage("ERROR! Input file with a sequence should be provided with -sequence/-in") unless $infile;
-pod2usage("ERROR! Unknown database at $db_path. Use -dbpath and -dbname for configuring the database" ) unless exists $database->{$db_entry};
+pod2usage("ERROR! Input file should be provided with -sequence/-in") unless $infile;
+pod2usage("ERROR! Unknown database at $db_path. Use -dbpath and -dbname for configuring the database") unless exists $database->{$db_entry};
pod2usage("ERROR! UNIREF database is not available at $dp. Use -dbpath and -dbname for configuring the database") unless -f $dp;
+#####################################################################################################
+# lots of preparation steps
if ( defined $prefix ) {
- unless (defined $outfile) {
- $outfile = $prefix. ".res.fasta";
+ unless ( defined $outfile ) {
+ $outfile = $prefix . ".res.fasta";
}
} else {
- if (defined $outfile) {
+ if ( defined $outfile ) {
print "WARNING! file prefix is not defined. Jpred will use $outfile.tmp as the prefix\n";
$prefix = $outfile . ".tmp";
} else {
print "WARNING! file prefix is not defined. Jpred will use $infile.res as the prefix\n";
- $prefix = $infile . ".res";
- $outfile = $prefix. ".jnet";
+ $prefix = $infile . ".res";
+ $outfile = $prefix . ".jnet";
}
}
$VERBOSE = 1 if $DEBUG;
my $LOG;
-if (defined $logfile) {
+if ( defined $logfile ) {
open( $LOG, ">", $logfile ) or die "ERROR! unable to open '$logfile': ${!}\nDied";
}
print $LOG "$par\n" if $LOG;
}
-#####################################################################################################
-if (defined $jabaws) {
+if ( defined $jabaws ) {
setup_jpred_env($Bin);
setup_env($Bin);
}
print $LOG "JPRED: checking platiform... $platform\n" if $LOG;
#####################################################################################################
-my $query = FASTA::File->new( read_file => $infile );
-
-my @seqs;
-my $psi = PSIBLAST->new;
-unless ( defined $psiblast && -e $psiblast ) {
- ## potentially a better set of parameters (esp. -b & -v) which avoid PSI-BLAST dying with large number of hits
- # args => '-e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -F "m S"' # 'soft' filtering of the query sequence
- # args => '-e0.001 -h0.0001 -m6 -b10000 -v10000 -j3' # stricter searching criteria
- # args => '-e0.05 -h0.01 -m6 -b10000 -v10000 -j3'
- my $psi_run = PSIBLAST::Run->new(
- debug => $DEBUG,
- args => "-a" . $ncpu . " -e0.05 -h0.01 -m6 -b10000 -v10000 -j3",
- path => $psiblastbin,
- input => $infile,
- output => "$prefix.blast",
- matrix => "$prefix.profile",
- database => $database->{$db_entry}{database},
- );
-
- # For reduced databases, get the size of the orginal and use this as
- # the equivilent DB size
- if ( $db_entry =~ /^sp_red_/ ) {
- ( my $entry = $db_entry ) =~ s/^sp_red_/sp_/;
- $psi_run->args(
- $psi_run->args . " -z " . fasta_seq_length( $database->{$entry}{database} ) # CC sub is below
- );
+# check input file format
+if ( 'seq' eq $goal ) {
+ $format = "seq";
+ if ( 1 != check_FASTA_format($infile) ) {
+ die "\nERROR! jpred requires 1 sequence in the FASTA file if the option -seq used. exit\n";
}
- print "BLAST matrix: $ENV{BLASTMAT}\n" if $DEBUG;
- print "BLASTDB path: $ENV{BLASTDB}\n" if $DEBUG;
- print $LOG "BLAST matrix: $ENV{BLASTMAT}\n" if $LOG;
- print $LOG "BLASTDB path: $ENV{BLASTDB}\n" if $LOG;
-
- print "Running PSI-BLAST on query against \'$database->{$db_entry}{database}\'...\n" if $VERBOSE;
- print $LOG "Running PSI-BLAST on query against \'$database->{$db_entry}{database}\'...\n" if $LOG;
- $psi_run->run or die; # CC sub is from PSIBLAST::Run
-
- $psi->read_file("$prefix.blast"); # CC PSIBLAST.pm doesn't have a read_file(), but Read.pm does?
- system("gzip -9f $prefix.blast");
} else {
- if ( $psiblast =~ /.gz$/ ) { $psi->read_gzip_file($psiblast) } # CC PSIBALST.pm doesn't have a read_gzip_file() object, but Read.pm does?
- else { $psi->read_file($psiblast) } # CC ditto above
+ my $nseq = check_FASTA_format($infile);
+ if ( 0 < $nseq ) {
+ $format = "fasta";
+ if ( 1 == $nseq ) {
+ die "\nERROR! jpred requires alignment with more than 1 sequence\n if you provide only one sequence use the -seq option.\n";
+ }
+ } elsif ( 0 < check_MSF_format($infile) ) {
+ $format = "msf";
+ } elsif ( 0 < check_BLC_format($infile) ) {
+ $format = "blc";
+ } else {
+ die "ERROR! unknown input file format for multiple sequence alignment (can be FASTA, MSF, or BLC). exit...\n";
+ }
}
+$infastafile = $infile . ".fasta" if ( 'msf' eq $format or 'blc' eq $format );
#####################################################################################################
-# Convert the last itteration into a collection of PSISEQ objects
-for ( $psi->get_all ) { # CC sub is from PSIBLAST.pm
- my ( $id, $start, $align ) = @{$_};
- push @seqs,
- PSISEQ->new(
- id => $id,
- start => $start,
- align => [ split( //, $align ) ]
+if ( 'seq' eq $goal ) {
+ my $query = FASTA::File->new( read_file => $infile );
+ my @seqs;
+ my $psi = PSIBLAST->new;
+ unless ( defined $psiblast && -e $psiblast ) {
+ ## potentially a better set of parameters (esp. -b & -v) which avoid PSI-BLAST dying with large number of hits
+ # args => '-e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -F "m S"' # 'soft' filtering of the query sequence
+ # args => '-e0.001 -h0.0001 -m6 -b10000 -v10000 -j3' # stricter searching criteria
+ # args => '-e0.05 -h0.01 -m6 -b10000 -v10000 -j3'
+ my $psi_run = PSIBLAST::Run->new(
+ debug => $DEBUG,
+ args => "-a" . $ncpu . " -e0.05 -h0.01 -m6 -b10000 -v10000 -j3",
+ path => $psiblastbin,
+ input => $infile,
+ output => "$prefix.blast",
+ matrix => "$prefix.profile",
+ database => $database->{$db_entry}{database},
);
-}
+
+ # For reduced databases, get the size of the orginal and use this as
+ # the equivilent DB size
+ if ( $db_entry =~ /^sp_red_/ ) {
+ ( my $entry = $db_entry ) =~ s/^sp_red_/sp_/;
+ $psi_run->args(
+ $psi_run->args . " -z " . fasta_seq_length( $database->{$entry}{database} ) # CC sub is below
+ );
+ }
+ print "BLAST matrix: $ENV{BLASTMAT}\n" if $DEBUG;
+ print "BLASTDB path: $ENV{BLASTDB}\n" if $DEBUG;
+ print $LOG "BLAST matrix: $ENV{BLASTMAT}\n" if $LOG;
+ print $LOG "BLASTDB path: $ENV{BLASTDB}\n" if $LOG;
+
+ print "Running PSI-BLAST on query against \'$database->{$db_entry}{database}\'...\n" if $VERBOSE;
+ print $LOG "Running PSI-BLAST on query against \'$database->{$db_entry}{database}\'...\n" if $LOG;
+ $psi_run->run or die; # CC sub is from PSIBLAST::Run
+
+ $psi->read_file("$prefix.blast"); # CC PSIBLAST.pm doesn't have a read_file(), but Read.pm does?
+ system("gzip -9f $prefix.blast");
+ } else {
+ if ( $psiblast =~ /.gz$/ ) { $psi->read_gzip_file($psiblast) } # CC PSIBALST.pm doesn't have a read_gzip_file() object, but Read.pm does?
+ else { $psi->read_file($psiblast) } # CC ditto above
+ }
+
+#####################################################################################################
+ # Convert the last itteration into a collection of PSISEQ objects
+ for ( $psi->get_all ) { # CC sub is from PSIBLAST.pm
+ my ( $id, $start, $align ) = @{$_};
+ push @seqs,
+ PSISEQ->new(
+ id => $id,
+ start => $start,
+ align => [ split( //, $align ) ]
+ );
+ }
#####################################################################################################
-## When there are no PSI-BLAST hits generate an HMM from the query
-## and run Jnet against that only.
-## Accuracy won't be as good, but at least it's a prediction
-if ( @seqs == 0 ) {
- if ( $predNoHits == 0 ) {
- warn "\nJPRED: Warning! no PSI-BLAST hits found and '-pred-nohits' option not set. Exiting...\n";
- print ">>100% complete\n";
- print $LOG "\nJPRED: Warning! no PSI-BLAST hits found and '-pred-nohits' option not set. Exiting...\n" if $LOG;
- print $LOG ">>100% complete\n" if $LOG;
- close ($LOG) if $LOG;
- exit;
+ # When there are no PSI-BLAST hits generate an HMM from the query and run Jnet against that only.
+ # Accuracy won't be as good, but at least it's a prediction
+ if ( @seqs == 0 ) {
+ if ( $predNoHits == 0 ) {
+ warn "\nJPRED: Warning! no PSI-BLAST hits found and '-pred-nohits' option not set. Exiting...\n";
+ print ">>100% complete\n";
+ print $LOG "\nJPRED: Warning! no PSI-BLAST hits found and '-pred-nohits' option not set. Exiting...\n" if $LOG;
+ print $LOG ">>100% complete\n" if $LOG;
+ close($LOG) if $LOG;
+ exit;
+ } else {
+ print ">>50% complete\n";
+ warn "\nJPRED: no PSI-BLAST hits found. Continuing with single query sequence only.\n\n";
+ print "Running HMMer on query...\n" if $VERBOSE;
+ print $LOG ">>50% complete\n" if $LOG;
+ print $LOG "\nJPRED: no PSI-BLAST hits found. Continuing with single query sequence only.\n\n" if $LOG;
+ print $LOG "Running HMMer on query...\n" if $LOG;
+
+ # copy input query to alignment
+ #system("cp $path $prefix.align") == 0 or croak "Error: unable to copy '$path'\n";
+ open( my $ifh, "<", $infile ) or die "JPRED: cannot open file $infile: $!";
+ open( my $ofh, ">", $prefix . ".align" ) or die "JPRED: cannot open file $prefix\.align: $!";
+ while (<$ifh>) { print $ofh, $_ }
+ close $ifh;
+ close $ofh;
+
+ # Temp files required for HMMer
+ my ( $hmmbuild_out, $hmmconvert_out ) = map { File::Temp->new->filename } 1 .. 2;
+ system("$hmmbuild -F --fast --amino --gapmax 1 --wblosum $hmmbuild_out $infile");
+ system("$hmmconvert -F -p $hmmbuild_out $hmmconvert_out");
+ unlink $hmmbuild_out;
+
+ # Read in the HMMER file
+ my $hmmer = HMMER::Profile->new( read_file => $hmmconvert_out );
+
+ # Convert from HMMER::Profile to HMMER::Profile::Jnet
+ my $hmmer_jnet = HMMER::Profile::Jnet->new;
+ $hmmer_jnet->add_line( @{$_} ) for $hmmer->get_line;
+ $hmmer_jnet->write_file("$prefix.hmm");
+ print ">>70% complete\n";
+ print $LOG ">>70% complete\n" if $LOG;
+
+ # Run Jnet for the prediction
+ print "Running JNet using the generated inputs from HMM only...\n" if $VERBOSE;
+ print $LOG "Running JNet using the generated inputs from HMM only...\n" if $LOG;
+ my $jnetlog = jnet( map { "$prefix.$_" } qw(hmm jnet) );
+ print ">>90% complete\n";
+ print $LOG ">>90% complete\n" if $LOG;
+ print $jnetlog if $VERBOSE;
+ print $LOG $jnetlog if $LOG;
+ }
} else {
+ psiseq2fasta( "0.fasta.gz", @seqs ) if $DEBUG;
+ print ">>40% complete\n";
+ print $LOG ">>40% complete\n" if $LOG;
+
+ #####################################################################################################
+ # Make PSIBLAST truncated alignments the right length
+ print "Untruncating the PSIBLAST alignments...\n" if $VERBOSE;
+ print $LOG "Untruncating the PSIBLAST alignments...\n" if $LOG;
+ @seqs = extend( $query, @seqs );
+ psiseq2fasta( "1.fasta.gz", @seqs ) if $DEBUG;
+
+ #####################################################################################################
+ # Remove masking from PSIBLAST alignment
+ print "Unmasking the alignments...\n" if $VERBOSE;
+ print $LOG "Unmasking the alignments...\n" if $LOG;
+ my $idx = Index->new( type => "Index::FastaCMD" ) or die "Index type cannot be found.";
+ remove_seq_masks( $idx, $_ ) for @seqs[ 1 .. $#seqs ];
+ psiseq2fasta( "2.fasta.gz", @seqs ) if $DEBUG;
+
+ #####################################################################################################
+ # Convert the sequences to upper case
+ print "Converting sequences to the same case...\n" if $VERBOSE;
+ print $LOG "Converting sequences to the same case...\n" if $LOG;
+ toupper($_) for @seqs; # CC sub is below
+ psiseq2fasta( "${prefix}_backup.fasta.gz", @seqs );
+
+ #####################################################################################################
+ # Remove excessive sequences
+ print "Remove excessive sequences...\n" if $VERBOSE;
+ print $LOG "Remove excessive sequences...\n" if $LOG;
+ @seqs = reduce( $MAX_ALIGN, @seqs );
+ psiseq2fasta( "3.fasta.gz", @seqs ) if $DEBUG;
+
+ #####################################################################################################
+ # Remove sequences that are too long or too short
+ print "Remove sequences which too long or short...\n" if $VERBOSE;
+ print $LOG "Remove sequences which too long or short...\n" if $LOG;
+ @seqs = del_long_seqs( 50, @seqs );
+ psiseq2fasta( "4.fasta.gz", @seqs ) if $DEBUG;
+
+ #####################################################################################################
+ # Remove redundant sequences based upon pairwise identity and OC clustering
+ print "Remove redundant sequences...\n" if $VERBOSE;
+ print $LOG "Remove redundant sequences...\n" if $LOG;
+ @seqs = nonred( $NR_CUT, @seqs );
+ psiseq2fasta( "5.fasta.gz", @seqs ) if $DEBUG;
+
+ #####################################################################################################
+ # Check that we haven't got rid of all of the sequences
+ if ( @seqs < 2 ) {
+ warn "JPRED: All the sequences found by PSIBLAST were removed during filtering, reverting to prefiltered sequences\n";
+ print $LOG "JPRED: All the sequences found by PSIBLAST were removed during filtering, reverting to prefiltered sequences\n" if $LOG;
+ @seqs = fasta2psiseq("${prefix}_backup.fasta.gz");
+ }
+ unlink("${prefix}_backup.fasta.gz") unless $DEBUG;
+
+ # Remove gaps in the query sequence and same positions in the alignment
+ print "Removing gaps in the query sequence...\n" if $VERBOSE;
+ print $LOG "Removing gaps in the query sequence...\n" if $LOG;
+ degap(@seqs);
+ psiseq2fasta( "6.fasta.gz", @seqs ) if $DEBUG;
+
+ # Output the alignment for the prediction
+ print "Outputting cleaned-up PSI_BLAST alignment...\n" if $VERBOSE;
+ print $LOG "Outputting cleaned-up PSI_BLAST alignment...\n" if $LOG;
+ psiseq2fasta( "$prefix.align", @seqs );
+
+ #####################################################################################################
+ # Equivilent to getpssm script
+ print "Output the PSSM matrix from the PSI-BLAST profile...\n";
+ print $LOG "Output the PSSM matrix from the PSI-BLAST profile...\n" if $LOG;
+ my $pssm = PSIBLAST::PSSM->new( read_file => "$prefix.profile" );
+ $pssm->write_file("$prefix.pssm"); # CC write_file() sub is in Write.pm loaded via PSIBLAST::PSSM
print ">>50% complete\n";
- warn "\nJPRED: no PSI-BLAST hits found. Continuing with single query sequence only.\n\n";
- print "Running HMMer on query...\n" if $VERBOSE;
print $LOG ">>50% complete\n" if $LOG;
- print $LOG "\nJPRED: no PSI-BLAST hits found. Continuing with single query sequence only.\n\n" if $LOG;
- print $LOG "Running HMMer on query...\n" if $LOG;
-
- # copy input query to alignment
- #system("cp $path $prefix.align") == 0 or croak "Error: unable to copy '$path'\n";
- open( my $ifh, "<", $infile ) or die "JPRED: cannot open file $infile: $!";
- open( my $ofh, ">", $prefix . ".align" ) or die "JPRED: cannot open file $prefix\.align: $!";
- while (<$ifh>) { print $ofh, $_ }
- close $ifh;
- close $ofh;
-
- # Temp files required for HMMer
- my ( $hmmbuild_out, $hmmconvert_out ) = map { File::Temp->new->filename } 1 .. 2;
-
- system("$hmmbuild -F --fast --amino --gapmax 1 --wblosum $hmmbuild_out $infile");
- system("$hmmconvert -F -p $hmmbuild_out $hmmconvert_out");
-
- # Read in the HMMER file
- my $hmmer = HMMER::Profile->new( read_file => $hmmconvert_out );
-
- # Convert from HMMER::Profile to HMMER::Profile::Jnet
- my $hmmer_jnet = HMMER::Profile::Jnet->new;
- $hmmer_jnet->add_line( @{$_} ) for $hmmer->get_line;
- $hmmer_jnet->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
+
+ #####################################################################################################
+ # Run HMMER on the sequences
+ print "Running HMMer on sequences found by PSI-BLAST...\n" if $VERBOSE;
+ print $LOG "Running HMMer on sequences found by PSI-BLAST...\n" if $LOG;
+ my $hmmer = hmmer(@seqs); # CC sub is below
+ $hmmer->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
print ">>70% complete\n";
print $LOG ">>70% complete\n" if $LOG;
-
+#####################################################################################################
# Run Jnet for the prediction
- print "Running JNet using the generated inputs from HMM only...\n" if $VERBOSE;
- print $LOG "Running JNet using the generated inputs from HMM only...\n" if $LOG;
- my $jnetlog = jnet( map { "$prefix.$_" } qw(hmm jnet) );
+ print "Running JNet using the generated inputs from HMM and PSI-BLAST...\n" if $VERBOSE;
+ print $LOG "Running JNet using the generated inputs from HMM and PSI-BLAST...\n" if $LOG;
+ my $jnetlog = jnet( map { "$prefix.$_" } qw(hmm jnet pssm) ); # CC sub is below
print ">>90% complete\n";
print $LOG ">>90% complete\n" if $LOG;
- print $jnetlog if $VERBOSE;
- print $LOG $jnetlog if $LOG;
+ print $jnetlog if $VERBOSE;
+ print $LOG $jnetlog if $LOG;
}
} else {
- psiseq2fasta( "0.fasta.gz", @seqs ) if $DEBUG;
- print ">>40% complete\n";
- print $LOG ">>40% complete\n" if $LOG;
-
- #####################################################################################################
- # Make PSIBLAST truncated alignments the right length
- print "Untruncating the PSIBLAST alignments...\n" if $VERBOSE;
- print $LOG "Untruncating the PSIBLAST alignments...\n" if $LOG;
- @seqs = extend( $query, @seqs );
- psiseq2fasta( "1.fasta.gz", @seqs ) if $DEBUG;
-
- #####################################################################################################
- # Remove masking from PSIBLAST alignment
- print "Unmasking the alignments...\n" if $VERBOSE;
- print $LOG "Unmasking the alignments...\n" if $LOG;
- my $idx = Index->new( type => "Index::FastaCMD" ) or die "Index type cannot be found.";
- remove_seq_masks( $idx, $_ ) for @seqs[ 1 .. $#seqs ];
- psiseq2fasta( "2.fasta.gz", @seqs ) if $DEBUG;
-
- #####################################################################################################
- # Convert the sequences to upper case
- print "Converting sequences to the same case...\n" if $VERBOSE;
- print $LOG "Converting sequences to the same case...\n" if $LOG;
- toupper($_) for @seqs; # CC sub is below
- psiseq2fasta( "${prefix}_backup.fasta.gz", @seqs );
-
- #####################################################################################################
- # Remove excessive sequences
- print "Remove excessive sequences...\n" if $VERBOSE;
- print $LOG "Remove excessive sequences...\n" if $LOG;
- @seqs = reduce( $MAX_ALIGN, @seqs );
- psiseq2fasta( "3.fasta.gz", @seqs ) if $DEBUG;
-
- #####################################################################################################
- # Remove sequences that are too long or too short
- print "Remove sequences which too long or short...\n" if $VERBOSE;
- print $LOG "Remove sequences which too long or short...\n" if $LOG;
- @seqs = del_long_seqs( 50, @seqs );
- psiseq2fasta( "4.fasta.gz", @seqs ) if $DEBUG;
-
- #####################################################################################################
- # Remove redundant sequences based upon pairwise identity and OC clustering
- print "Remove redundant sequences...\n" if $VERBOSE;
- print $LOG "Remove redundant sequences...\n" if $LOG;
- @seqs = nonred( $NR_CUT, @seqs );
- psiseq2fasta( "5.fasta.gz", @seqs ) if $DEBUG;
-
- #####################################################################################################
- # Check that we haven't got rid of all of the sequences
- if ( @seqs < 2 ) {
- warn "JPRED: All the sequences found by PSIBLAST were removed during filtering, reverting to prefiltered sequences\n";
- print $LOG "JPRED: All the sequences found by PSIBLAST were removed during filtering, reverting to prefiltered sequences\n" if $LOG;
- @seqs = fasta2psiseq("${prefix}_backup.fasta.gz");
+ if ( 'fasta' eq $format ) {
+ print "Read FASTA file\n";
+ my $hmmer1 = hmm_for_align($infile);
+ $hmmer1->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
+ } elsif ( 'msf' eq $format ) {
+ msf2fasta( $infile, $infastafile );
+ my $hmmer2 = hmm_for_align($infastafile);
+ $hmmer2->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
+ } elsif ( 'blc' eq $format ) {
+ my $tmpfile = File::Temp->new->filename;
+ blc2msf( $infile, $tmpfile );
+ msf2fasta( $infile, $infastafile );
+ my $hmmer3 = hmm_for_align($infastafile);
+ $hmmer3->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
+ } else {
+ die "ERROR! unknown input format '$format'. exit...\n";
}
- unlink("${prefix}_backup.fasta.gz") unless $DEBUG;
-
- # Remove gaps in the query sequence and same positions in the alignment
- print "Removing gaps in the query sequence...\n" if $VERBOSE;
- print $LOG "Removing gaps in the query sequence...\n" if $LOG;
- degap(@seqs);
- psiseq2fasta( "6.fasta.gz", @seqs ) if $DEBUG;
-
- # Output the alignment for the prediction
- print "Outputting cleaned-up PSI_BLAST alignment...\n" if $VERBOSE;
- print $LOG "Outputting cleaned-up PSI_BLAST alignment...\n" if $LOG;
- psiseq2fasta( "$prefix.align", @seqs );
-
- #####################################################################################################
- # Equivilent to getpssm script
- print "Output the PSSM matrix from the PSI-BLAST profile...\n";
- print $LOG "Output the PSSM matrix from the PSI-BLAST profile...\n" if $LOG;
- my $pssm = PSIBLAST::PSSM->new( read_file => "$prefix.profile" );
- $pssm->write_file("$prefix.pssm"); # CC write_file() sub is in Write.pm loaded via PSIBLAST::PSSM
- print ">>50% complete\n";
- print $LOG ">>50% complete\n" if $LOG;
-
- #####################################################################################################
- # Run HMMER on the sequences
- print "Running HMMer on sequences found by PSI-BLAST...\n" if $VERBOSE;
- print $LOG "Running HMMer on sequences found by PSI-BLAST...\n" if $LOG;
- my $hmmer = hmmer(@seqs); # CC sub is below
- $hmmer->write_file("$prefix.hmm"); # write_file is in the Read.pm called from the HMMER::Profile module
print ">>70% complete\n";
print $LOG ">>70% complete\n" if $LOG;
-
- #####################################################################################################
+#####################################################################################################
# Run Jnet for the prediction
- print "Running JNet using the generated inputs from HMM and PSI-BLAST...\n" if $VERBOSE;
- print $LOG "Running JNet using the generated inputs from HMM and PSI-BLAST...\n" if $LOG;
- my $jnetlog = jnet( map { "$prefix.$_" } qw(hmm jnet pssm) ); # CC sub is below
+ print "Running JNet using the generated inputs from HMM only...\n" if $VERBOSE;
+ print $LOG "Running JNet using the generated inputs from HMM only...\n" if $LOG;
+ my $jnetlog = jnet( map { "$prefix.$_" } qw(hmm jnet) ); # CC sub is below
print ">>90% complete\n";
print $LOG ">>90% complete\n" if $LOG;
- print $jnetlog if $VERBOSE;
- print $LOG $jnetlog if $LOG;
+ print $jnetlog if $VERBOSE;
+ print $LOG $jnetlog if $LOG;
}
unless ( defined $nofinal ) {
my $aligfile = $prefix . ".align";
my $jnetfile = $prefix . ".jnet";
my $jnetfastafile = $prefix . ".jnet.fasta";
+ $aligfile = $infile if ( 'fasta' eq $format );
+ $aligfile = $infastafile if ( 'msf' eq $format or 'blc' eq $format );
concise2fasta( $jnetfile, $jnetfastafile );
open( my $IN1, "<", $aligfile ) or die "ERROR! unable to open '$aligfile': ${!}\nDied";
open( my $IN2, "<", $jnetfastafile ) or die "ERROR! unable to open '$jnetfastafile': ${!}\nDied";
close($IN2);
close($OUT);
unlink $jnetfastafile;
+ my $seqs = FASTA::File->new( read_file => $outfile );
+ open( my $OUT2, ">", $outfile ) or die "ERROR! unable to open '$outfile': ${!}\n";
+ $seqs->write($OUT2);
+ close($OUT2);
} else {
- if (defined $outfile and $prefix.".jnet" ne $outfile) {
- rename $prefix.".jnet", $outfile;
+ if ( defined $outfile and $prefix . ".jnet" ne $outfile ) {
+ rename $prefix . ".jnet", $outfile;
}
}
print ">>100% complete\n";
print "Jpred Finished\n";
print $LOG ">>100% complete\n" if $LOG;
-print $LOG "Jpred Finished\n" if $LOG;
-close ($LOG) if $LOG;
+print $LOG "Jpred Finished\n" if $LOG;
+close($LOG) if $LOG;
exit;
#####################################################################################################
# Functions
#####################################################################################################
+sub check_FASTA_format {
+ my $infile = shift;
+
+ open( my $IN, "<", $infile ) or die "ERROR! unable to open '$infile': ${!}\n";
+ my $check_first_line = 1;
+ my $nseq = 0;
+ local $/ = "\n>";
+ while (<$IN>) {
+ if ($check_first_line) {
+ return 0 unless (/^>/);
+ $check_first_line = 0;
+ }
+ s/^>//g;
+ s/>$//g;
+
+ my ( $id, @seqs ) = split /\n/, $_;
+ return 0 unless ( defined $id or @seqs );
+ my $seq = join( "", @seqs );
+ return 0 unless ( $seq =~ /[a-zA-Z\.-]/ );
+ ++$nseq;
+ }
+ close($IN);
+
+ return $nseq;
+}
+#####################################################################################################
+sub check_MSF_format {
+ my $infile = shift;
+ $? = 0;
+ system("$readseq -fMSF -a -p < $infile > /dev/null");
+ return 0 if ($?);
+
+ return 1;
+}
+#####################################################################################################
+sub check_BLC_format {
+ my $infile = shift;
+
+ my ( $tmpfile1, $tmpfile2 ) = map { File::Temp->new->filename } 1 .. 2;
+ open my $fh, ">$tmpfile1" or die "$tmpfile1: $!\n";
+ print $fh "silent_mode\nblock_file $infile\n";
+ print $fh "output_file /dev/null\nmax_nseq 2000\n";
+ print $fh "pir_save $tmpfile2\nsetup\n";
+ close $fh;
+
+ $? = 0;
+ system("$alscript -s -f $tmpfile1");
+ $? = 0;
+ system("$readseq -f8 -a -p < $tmpfile2 > /dev/null");
+ unlink $tmpfile1;
+ unlink $tmpfile2;
+ return 0 if ($?);
+
+ return 1;
+}
+############################################################################################################################################
+# convertor BLC -> MSF
+sub msf2fasta {
+ my $infile = shift;
+ my $outfile = shift;
+
+ my $sequence = "";
+ open( my $IN, "<", $infile ) or die "ERROR! unable to open '$infile': ${!}\n";
+ while (<$IN>) {
+ $sequence .= $_;
+ }
+ close($IN);
+
+ $sequence =~ s/~/\./g;
+
+ ## check for non-unique sequence names - readseq has problems with these
+ my @lines = split /\n/, $sequence;
+ my %names;
+ foreach my $line (@lines) {
+ if ( $line =~ /Name:\s+(\S+)/ ) {
+ die "ERROR! Alignment has non-unique sequence ids. exit...\n" if ( defined( $names{$1} ) && $names{$1} >= 1 );
+ $names{$1}++;
+ }
+ }
+
+ my $tmpfile1 = File::Temp->new->filename;
+ my $tmpfile2 = File::Temp->new->filename;
+ open my $FILE, ">$tmpfile1" or die "open $tmpfile1 failed: $!";
+ print $FILE $sequence;
+ close $FILE;
+
+ $? = 0;
+ system("$readseq -fMSF -a -p < $tmpfile1 > $tmpfile2");
+ die "Reformatting of $infile failed. exit...\n" if ($?);
+ unlink $tmpfile1;
+
+ $? = 0;
+ system("$readseq -f8 -a -p < $tmpfile2 > $outfile");
+ die "Reformatting of $infile failed. exit...\n" if ($?);
+ unlink $tmpfile2;
+
+ die "Reformatting the input alignment has failed. exit...\n" unless ( -e $outfile );
+}
+
+############################################################################################################################################
+# convertor BLC -> MSF
+sub blc2msf {
+ my ( $in, $out ) = @_;
+
+ my ( $tmp, $tmp_pir ) = map { File::Temp->new->filename } 1 .. 2;
+
+ open my $fh, ">$tmp" or die "$tmp: $!\n";
+ print $fh "silent_mode\nblock_file $infile\n";
+ print $fh "output_file /dev/null\nmax_nseq 2000\n";
+ print $fh "pir_save $tmp_pir\nsetup\n";
+ close $fh;
+
+ $? = 0;
+ system("$alscript -s -f $tmp");
+ die "Reformatting of $infile failed. exit...\n" if ($?);
+ system("$readseq -f=MSF -o=$out -a $tmp_pir");
+
+ unlink $tmp;
+ unlink $tmp_pir;
+}
#####################################################################################################
=cut
+#################################################################################################################################################
+
+=head2 get_hmm($alignFile, $name)
+
+Adapted from the hmmer() function in Jpred as written by JDB.
+
+Generates an HMMer profile output compatible with Jnet.
+
+Equivilent to gethmm script.
+
+=cut
+
+sub hmm_for_align {
+ my $fastafile = shift;
+
+ # Temp files required
+ print "hmm_for_align: fastafile = $fastafile\n";
+ my ( $hmmbuild_out, $hmmconvert_out ) = map { File::Temp->new->filename } 1 .. 2;
+
+ system("$hmmbuild -F --fast --amino --gapmax 1 --wblosum $hmmbuild_out $fastafile");
+ system("$hmmconvert -F -p $hmmbuild_out $hmmconvert_out");
+
+ # Read in the HMMER file
+ my $hmmer = HMMER::Profile->new( read_file => $hmmconvert_out );
+
+ # Read in the HMMER file
+ my $hmmer_tmp = HMMER::Profile->new( read_file => $hmmconvert_out );
+
+ # Convert from HMMER::Profile to HMMER::Profile::Jnet
+ my $hmmer_jnet = HMMER::Profile::Jnet->new;
+ $hmmer_jnet->add_line( @{$_} ) for $hmmer_tmp->get_line;
+
+ return $hmmer_jnet;
+}
+
#####################################################################################################
sub jnet {
my ( $hmmer, $outfile, $pssm ) = @_;
system("$jnet --concise --hmmer $hmmer > $outfile");
}
check( "jnet", $? ) or exit 1;
- my $res = "";
+ my $res = "";
my $logging = "";
open( my $IN, "<", $outfile ) or die "ERROR! unable to open '$outfile': ${!}\nDied";
while (<$IN>) {
}
close $IN;
open( my $OUT, ">", $outfile ) or die "ERROR! unable to open '$outfile': ${!}\nDied";
- print $OUT "\n".$res;
+ print $OUT "\n" . $res;
close $OUT;
return $logging;
}
return @seqs;
}
+#####################################################################################################
+
=head1 extend($FASTA::File, @PSISEQ)
Sometimes PSIBLAST truncates the outputed alignment where it can't matched residues
=cut
-#####################################################################################################
sub extend {
my ( $query, @seqs ) = @_;
return @seqs;
}
+#####################################################################################################
+
=head1 $int = fasta_seq_length($path)
Given the path to a FASTA database, find the number of residues/bases in it. Counts whitespace as a residue.
=cut
-#####################################################################################################
sub fasta_seq_length {
my ($fn) = @_;
open my $fh, $fn or croak "Can't open file $fn: $!\n";
return $length;
}
-
-=head1 log(@messages)
-
-Report messages to STDERR
-
-=cut
$hmmbuild
$hmmconvert
$psiblastbin
+ $alscript
+ $readseq
check_OS
setup_env
);
our $hmmbuild = "$SOFTDIR/$platform_name/hmmbuild";
our $hmmconvert = "$SOFTDIR/$platform_name/hmmconvert";
our $psiblastbin = "$SOFTDIR/$platform_name/blastpgp";
+our $alscript = "$SOFTDIR/$platform_name/alscript";
+our $readseq = "$SOFTDIR/$platform_name/readseq";
# required for training with SNNS, but unused currently
our $ff_bignet = "$HOME/projects/Jnet/bin/snns/ff_bignet"; # CC modified for new path (SNNS app)
$hmmbuild = "$SOFTDIR/$platform_name/hmmbuild";
$psiblastbin = "$SOFTDIR/$platform_name/blastpgp";
$hmmconvert = "$SOFTDIR/$platform_name/hmmconvert";
+ $alscript = "$SOFTDIR/$platform_name/alscript";
+ $readseq = "$SOFTDIR/$platform_name/readseq";
}
sub check_OS {
warn "check_OS: unknown platform, I'll try to use x86_64 binaries....";
}
-# print "\n\ncheck_OS: SOFTDIR -> $SOFTDIR\n\n";
-
$oc = "$SOFTDIR/$platform_name/oc";
$jnet = "$SOFTDIR/$platform_name/jnet";
$fastacmd = "$SOFTDIR/$platform_name/fastacmd";
$hmmbuild = "$SOFTDIR/$platform_name/hmmbuild";
$psiblastbin = "$SOFTDIR/$platform_name/blastpgp";
$hmmconvert = "$SOFTDIR/$platform_name/hmmconvert";
+ $alscript = "$SOFTDIR/$platform_name/alscript";
+ $readseq = "$SOFTDIR/$platform_name/readseq";
return $platform_name;
}
--- /dev/null
+CLUSTAL W(1.60) multiple sequence alignment
+
+QUERY MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLK
+UniRef90_C0EK60 MKKIEAIIKPFKLDDVREILTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKVK
+UniRef90_Q21P81 MKLITAVIKPFKLDDVRNALSEIGVQGMTVTEVKGFGRQKGHTELYRGAEYVIDFLPKVK
+UniRef90_Q47GI8 MKKIEAIIKPFKLDEVREALSEIGISGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK
+UniRef90_B9ZJ79 MKKIEAIIKPFKLEDVREALTEMGIAGMTATEVQGFGRQKGHTELYRGAEYVVDFLPKVK
+UniRef90_B5FAN6 MKIINAIIKPFKLDDVREALADAGVDGMTVSEVKGFGRQKGHTELYRGAEYQVDFLPKVK
+UniRef90_B5ZIL8 MKKIEAIIKPFKLDEVKDALHEIGLMGISVTEAKGFGRQKGHTELYRGAEYIVDFLPKVK
+UniRef90_B4RVM6 MKKIEAIIKPFKMDDVREALAEVGIAGMTVSEVKGFGRQKGHTELYRGAEYQVDFLPKIK
+UniRef90_B2FHB8 MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK
+UniRef90_P21193 MKKIEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK
+UniRef90_B5JS45 MKKIEAVIKPFKLDDVRDALADIGVSGMTVTEVKGFGRQKGHTETYRGAEYVVDFLPKLK
+UniRef90_Q07UM0 MKLVVAIIKPFKLDEVRQALTDVGVHGMTVTEVKGYGRQRGHTEIYRGAEYLVNFLPKLR
+UniRef90_Q2RVB4 MKFVIAITKPFKLDEVREALGALGIQGMTVTEVKGFGRQKGQTEVYRGAEYVVNFLPKVK
+UniRef90_A9IPV3 MKLIIAIIKPFKLDEVRVALSGIGVQGLTVTEVKGFGRQKGHTELYRGAEYAVDFLPKLR
+UniRef90_A4TZT2 MKLIIAIIKPFKLDEVREALTQLGIQGLTATEVKGFGRQKGQTEIYRAAEYVVSFVPKIK
+UniRef90_B3DVA4 --KIEAIIKPFKLEEVKEALTEIGIAGLTVTEVKGFGRQKGHTEIYRGSEYTVDFLPKVK
+UniRef90_C1STD4 MRKIEIITRPFKLDEVKQRLTKLGIQGMTVTEVKGFGRQRGHKEIYRGAEYQVDFVAKVK
+UniRef90_A7HGG9 MKRIEAIIRPSKLEDVRRLLSHPWISAMTVSEVRGAGRQKGHAELYRGAEYVIDLIPKLK
+UniRef90_A9BCF1 MKKIEAIIRPFKLEDVKVALVNSGIVGMTVSEVRGFGRQKGQVERYRGSEFTVEFLQKLK
+UniRef90_B4U911 MKKVEAIIKPFKLDEVKDALVEIGIGGMTITEVKGFGQQKGKTEIYRATEYVIDFLPKIK
+UniRef90_B1ZSX2 MKLVTAIIKPFKLEEIKAALAEIQVEGMTVTEVKGFGRQKGHTEIYRGTEYTVDFLPKVR
+UniRef90_Q7X1L4 MKKVEAIIKPFKLDAVKEAVTALGVYGMTVTEVKGYGQQKGHTEQYRGAEYVVEFITKIK
+UniRef90_Q1NW36 MKKVEAIIKPFKLDAVKEAVTALGIHGMTVSEVKGFGRQKGHTEVYRGAEYVVDFVAKIK
+UniRef90_C0GRX0 MKKLEIITRPFKVEAVKEALAGMGIKGMTLTDVKGFGRQMGHKEIYRGAEYDVDFLPKVK
+UniRef90_B8DJ84 MKKIEAIIKPFKLDAVKDALIGIGVFGLTVTEVRGYGRQRGHVETYRGLEYEVQFNSKLK
+UniRef90_Q6ARG9 MKKIEAIIKPFKLEEIKEALTELAITGMTISEVKGYGRQKGHKEMYRGAEYSIDFNPKLK
+UniRef90_C1W154 MKLVTAIIQPHRLDAVKSALEAAGIRGMTVSEASGYGRQKGHTEVYRGAEYTIDLVPKIR
+UniRef90_C1UII8 MKLVTAIVKPFKLDDVKNALELIGIAGLTVSEVQGFGRQRGHTEVYRGAEYQVDFVPKVR
+UniRef90_UPI000 --KVTVITNQAKFYQLKTSLEAIGITGMTVIQVLGFGIQKGQPEYYRGNPIEATLLPKVK
+UniRef90_C1T022 MKLVIAYIRPECLNAVKQELYAKKIYNMSVTNVLGSGRQKGFTETYRGVVMEVNLLKKLR
+UniRef90_Q46G48 MKYIIAMIRPERLDAVKRELQKLEVNRLTVSSVAGYGAQKGHLEIYRATEHEANLLEKVK
+UniRef90_A2RJQ2 MKKIEAIIRTDKLEDLKKALSDNGVHGMTVSQVLGYGEQKGFAEYVRGQRIETTLLSKIK
+UniRef90_Q8KF33 MKKIEAIIRTSQYEAVKKALHEIDIDFFTWWDVTGQGNDKKHTEIYRGTVRDTSYISRRY
+UniRef90_B1HTS9 MKKIEVIIRPEVFGAVRDGLAQQGIAGLSVSEIAGCGRQLGRTGLFRGNTYEIEFLPKLK
+UniRef90_A2SPS9 MKMITAIIRPEKVDEVLNALEQNNIPGVTITEVLGRGEQGGVCLQYRAGKMQVKTLPKTK
+UniRef90_C0EAH3 --KLVIVTRQSKFEELKAAMNAIEVTGMTVTQVIGCGTQKGATEFYRGVPVEMNLLPKIK
+UniRef90_A7I8Z1 --MISAIIKPERFEFVKKALEDKGYVSMTITEVKGRGEQKGISLEYRGGKMTVDLLPKVK
+UniRef90_Q3AFZ0 MKKIEALIRPQKLGEVKEALNKLGISGMTVTEVVGCGRQKGQKEIYRGIEYEINLLPKVK
+UniRef90_A7I508 MKLVIALIRPERFGAVKKALEDKGYIGMTTAEAKGRGAQKGIALVYRGGRLTIDILVKVR
+UniRef90_P51604 MKEIIAIIRPNKINRTKEVLDALGFSSMTANAVFGRGRQKAIVGELREEEGSMRYIPKRM
+UniRef90_B0NXT3 --KINAIVREEKFEDVKEALNKIGVNGITVSQVMGCGAQKGFTEVIRGTKVDMMMRPKIK
+UniRef90_A8YG01 ----------------KIALVNAGIVGMTVSEVRGFGRQKGQSERYRGSEYTVEFLQKLK
+UniRef90_C0BMJ9 MKKVEAIIRKSKFDDVKKALHAIEVNFFSYWDVTGVGNEKQ-GHVYRGISYSTSDIQRRI
+UniRef90_Q466Y2 MCKIEAIIKPMKLHEVKDALEEAGYPSLTVTDVKGRGQQKGIVQQWRGKKYCVDLLPKTK
+UniRef90_O26760 MKEIVAIIRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRIDLLPKTK
+UniRef90_A0LYN2 MKKIEAIIRKSEFDETKEALHSIGVTFFSYWDVTGVGNEKV-GHVYRGVSYSTADIQRRY
+UniRef90_C1YA75 MKVVTAVIKPFKLDEVRAALLAFGVQGMTVSESSGYGRQRGHTEVYRGAEYTVELLPKVR
+UniRef90_A8KX44 MKLVTAIVRPHRVDDVRAALTTYGVHGITVSQVTGFGLEMWRTQTYRGNAFHDESTSNIR
+UniRef90_C0EZB6 --KLTIMCKEDRFAILKDAMSQIGVTGMTVSHVMGCGTQKGKTGQYRGVKIDMNLLPQLQ
+UniRef90_Q11P32 MKKIEAIVKPSKLKAIQAGLIKIGIPCMTVVPVKGVGLQQGFPEIYRGTEKSIVLLSKVM
+UniRef90_A7B6Y7 --KIEAIVREEKFEQVKSALQDIQVNGVTISQVMGYGTQRGYTEIVRGSEVDILLHPKIK
+UniRef90_A7VSI5 --KVVILFNQDKFIELKDAMNAIGVTGMTVIHVMGCGVQKGNTRYYRGVKLDIVLLPKIK
+UniRef90_A6G036 --KVEAMIRPFKLDDVKERLTELEVGGMTVTEVKGFGRTGGKTEFYRGSAYVIDFVPKIK
+UniRef90_C0ES36 MIKVEAYVREDKFEDVKAALNAIGVNGLTVSQVMGCGIQRGYKEIVRGMQVDMQMQPKIK
+UniRef90_B5IHX8 MKQIQAIVRPEKLDAVKDALVEIGINGITVTAVQGFGKQMGHTEVYRGVKVEAKLLTKMQ
+UniRef90_B0MIE7 ---------PEKLTDVKHILEAHKVSGLMISNIMGYGNQKGFTQKYRGNELNSNLLPKIK
+UniRef90_B4S395 MKLITAIIQEDKLDQVREALIQANISRISVSRISGHGRQE-DIDIYRGRKIAPNLRPKIK
+UniRef90_P51254 MKKIEAIIRPFKLNEVKLALVKGGIGGMTVVKVSGFGRQKGQTERYKGSEYSIDIIDKIK
+UniRef90_P71524 MKMIRAVVRPSKAEEVVDALAESGCVALTKMDVIGRGKQKG----IKIDQIYYDELPKTM
+UniRef90_A8JI83 ---IEAIFRPWRLPFVIDTLSKYGIRGLTNTPVKGVGVQGGSRERYAGTEFGPNLVDKEK
+UniRef90_B0CD03 MRTITAFIRPQQCDQVKLVLVQLGIIDITLSDVKGFGRQQGSLQQYRGSDAEIRLHRKLK
+UniRef90_B1QY06 MKRIEAIIRPSKLEEIKEALKNNNINGVTISQVMGCGKQLGWKEYHRGTELITNVLPKIE
+UniRef90_Q30VL0 MKLLIAYIRPEKLSTVKKALYARGIYAMSVTNALGSGQQKGFTETYRGIVTEVNLLKKVR
+UniRef90_A0T2Q5 MKEVLAIIRPNMVSKTGKALEAVGFPAMTVIRCFGRGKEKGYIDAGEKLGMRMKYIPKRM
+UniRef90_B3QXW9 MKEITAIIRINKMNETKKALIKAGISSFTASRVLGRGKGQVHYDLLKGAAEGYELVSKRY
+UniRef90_B6YRQ4 MKKIEAIIRKTRFDEVKEALLEADIEWFSYSDVRGVGKARQ-ERIYRGVVYDTSSIERIQ
+UniRef90_B0MJN0 MTKVDIIANQEKFEVLKHALSSIGITGMTVSHVMGCGMQKGSTEFYRGVPVDARLLPKMK
+UniRef90_C2C1T3 --KIEIITRPNRFDVFQKALKEIGVSGLTVTKAVGTGLEKGMIELYRGTIKENNVHERMK
+UniRef90_C1VTA2 --LVMAIVRPEKLSDVKAALAEAGAPSLTVTQVSGRGSQPAKTGQWRGEEYVIDLHQKIK
+UniRef90_A3XNG5 MKKIEAIIRKSKFTAVKKALHDKGVNFFSYWDVTGLGNEKE-GHVYRGVSYSTSDIQRRY
+UniRef90_P71525 MKEIIAIIRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELGFEV-DMRYIPKTM
+UniRef90_Q46C91 MKEIIAIIRPKKVVPTKEALEKLGVPSLTAIPVFGRGKQKGIATELDIAGRRMEYIPKRL
+UniRef90_B7BWA8 MKEVMIILRPKMYFPTKDALDQAGFHSMTIREIIGRGKCPVHYDYDEGAPVKHRLVAKRM
+UniRef90_Q7UGU6 MKLIIAIVQPSKLDAIKEALTRVEVHRLTVVDCQGFGRQRGQTGSMRGRDYGVSLLRKVQ
+UniRef90_A3HVG6 MKKIEAIIRTSRFEQIHSCVAGLGVKFLTFYEVKGMGLEHAKQQTYRGVAYEPTYIPRTK
+UniRef90_A0YMH7 MKRIEALIRPVQFDSVVTALVEAGIVGMSVTNVRGYGRQKGQTESYRGVKHVIEFHPKMK
+UniRef90_Q46A23 MKYIIAMIRPEKLDSVKKEIQKIGAHGLTVSSISGYGAQGGHLNVDRTKKYEANLLDKVK
+UniRef90_B4VJP7 ----------------MKALLDAGYPAVTKVDVFGRGKQRG----LKIGNVLYDELPKAL
+UniRef90_B1QUW3 MYLVRAIIRTEKVNGVLSELVDAGFPQVTKMDVFGRGKQKG----IQVGEVHYDELPKEM
+UniRef90_A5N1U1 MKEIMAVIRMNMVGKTKKALAENGFPSITCKDVLGRGKKMVEEELHRIEDESYRLISKRL
+UniRef90_A9D1T1 -----------------------------------------------GAEYMVDFLPKVK
+UniRef90_A6LUZ0 MYMIRAIIRPERVSTVLSELLDAGFPEVTKMAVYGRGKQKG----IKVGEVYYDELPKEM
+UniRef90_A6LUZ1 MKEVMCIIRLNKVNKTKEALAEAGFPSITCRKVLGRGKKSALVEAYMETGEVPRLIPKRF
+UniRef90_B8GEW5 MKEIMAIVRMKKTGVTKRALVETGVAGFTALKVLGRGKLVEDTAVIEPAEQEVRFFPRRL
+UniRef90_C1FI34 --QVRAMVRPWRLSGVIDALNKYGIRGLTTYTVHGAGVQIGTVERYAGSTFDANLVEKVV
+UniRef90_C1TA34 MKEIIAIIRMNKVNITKKALADVGVCGLHAIKVMGRGKQLGVREEIDGLSGGTRLIPKRL
+UniRef90_C1T440 MKEVIAVIRMNMMNKTKKALQDAGVVAFFAHEAFGRGKGLVDVKPLEGARKGIELYPKRM
+UniRef90_A9A2H4 MKKVEAIVNESAQNAVIDAMRKVGISGVTVSKVQGQGAQD--------PPLVGDFFSRVL
+UniRef90_Q97ME3 MKEIMAIIRMNMVEKTKEALLKGGNPAITCLKVLGRGRQKVDIEDYKMAEELSELISKRL
+
+QUERY LEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADAISAWS
+UniRef90_C0EK60 IELVLADDKVDQAVDAILETAHSGKIGDGKIFIYPVEEAIRIRTGERSEAAL----
+UniRef90_Q21P81 LELVLGDELIDQAVEAISKAAQTGKIGDGKIFITPCEEVIRIRTGETGPEAV----
+UniRef90_Q47GI8 IEIVVNSNNVEPAIDAIIKAARTGKIGDGKIFVMPVEQVVRIRTGETDEAAV----
+UniRef90_B9ZJ79 LELVVDDDRVDACIDAIVKASRTGKIGDGKIFVSDMARVVRIRTGEEGSEAL----
+UniRef90_B5FAN6 LEIAVQAEGVDRIVEAISKAAHTGKIGDGKIFVYDLQQAVRIRTGETDTEAL----
+UniRef90_B5ZIL8 LEIVCADNLVDRAVETIMAAARTGRIGDGKIFILPVEDVIRIRTGEHGEEAI----
+UniRef90_B4RVM6 IELVLDDDRVEQAVEAIQSSAKTGKIGDGKIFVYSVESAVRIRTGEQNEDAI----
+UniRef90_B2FHB8 IETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL----
+UniRef90_P21193 IEVVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKGGDAI----
+UniRef90_B5JS45 LEIVVAEKDADACVESITNAAKTGQIGDGKIFVSDVERTIRIRTGEEDESAI----
+UniRef90_Q07UM0 IEVGVADTLVDKAVEAITRSARTGQIGDGKIFVTPLDHALRIRTGETNADAL----
+UniRef90_Q2RVB4 IELAVPDNLLDQVVETIQSTAQTGKIGDGKIFVFDLGEAVRIRTGERGEEAL----
+UniRef90_A9IPV3 VEAAVPDHLVDQVIDVIEQAARTGKIGDGKIFTAPLEQVIRIRTGESGEAAL----
+UniRef90_A4TZT2 IELVVNDDVVDRAVEAIQAAARTDKIGDGKIFVMDVAHALRIRTGEADTEAL----
+UniRef90_B3DVA4 VEIVLTEDILPKAVEAIIKSAKTGKIGDGKIFVLPVSEAIRIRTEEKGENAI----
+UniRef90_C1STD4 IEIVVDDGLVEEIVSTVQEGARTGKVGDGKIFISPVDNAVRIRTGESGAEAL----
+UniRef90_A7HGG9 LEIVLPDPLVDRVVADLESWLRTGRIGDGKIFVEPLDDAVRVRTGERGEDAL----
+UniRef90_A9BCF1 IEIVVADESVPTVLTAIAEAAKTGEIGDGKIFISPVESVVRIRTGELDGSAL----
+UniRef90_B4U911 IETVVKDSEVEKVVQTILKSAQTGKVGDGKIFIYNVEETVRIRTGERGESAI----
+UniRef90_B1ZSX2 IEILAADESVPKILETIISTAKTGKIGDGKIFISAAEDVVRIRTDERGEAAL----
+UniRef90_Q7X1L4 VEIVVADAKVSPVLEAIRRTAMSNSIGDGKVFVSPVETALRIRTGETGDAAL----
+UniRef90_Q1NW36 VEIVVESEKASLLVETITQAARNGNIGDGKIFVTPVESVCRIRTGELDQDAI----
+UniRef90_C0GRX0 IEVILDDANVDQAVEAAIKAARTDKVGDGKIFVYSVENAIRIRTGESGDEAI----
+UniRef90_B8DJ84 IETVVPDGMSDQVVKAITTAARTGSIGDGKIFISSLEEVIRIRTGEEGTDAI----
+UniRef90_Q6ARG9 IELVVRAEIADKVVEKIRLAARTGKIGDGKIFVLPIEEVVRVRTGEQGREAI----
+UniRef90_C1W154 LEILVDDPDAHRVGEVITQAAHTGRIGDGKVWTIPVDSVTRVRTGEEGPSAL----
+UniRef90_C1UII8 IEVVVGEIEAARVVDAIVEAASTGQIGDGKVWVTTIDEIVRVRTGERGADAL----
+UniRef90_UPI000 MKKIEAIIRPEAFQTLKDGLSAVGISGLTVTEAAGCGKQQGKKGVFRGTSFEIQLVPRVK
+UniRef90_C1T022 LEIGVNDDFAEQAVEAINAGARTGKEGDGVIFVLECAAAVRIRTQETGPAAMG---
+UniRef90_Q46G48 IEIAVEDHFLKSVIEAIKTGAKDGYIGSGKIFVLPLENVIRIRTNETGPEAL----
+UniRef90_A2RJQ2 IEIVSIDEKVDQIVNVITKAVRTGEVGDGKIFIQPVERVIRIRTSEEDAQAL----
+UniRef90_Q8KF33 LSIVVRDVNLQKTVDCLIKNARTGEVGDGKIFVSDIEQSYRIRTGESGDESL----
+UniRef90_B1HTS9 LEMIVDDSKVDGIVEILLREAATGKVGDGKIFIYPVEQAIRIRTKEVGSIAV----
+UniRef90_A2SPS9 LEIVVPDKDVDTLIKVIREHARTGKKGDGRIFVLPVEAAAWVRTDE----------
+UniRef90_C0EAH3 VEIVVCRVPVRTVIETAKKVLYTGHYGDGKIFVYDIENVVKVRTGEEGCAALQ---
+UniRef90_A7I8Z1 IEIVIRDKDLEDVIATLTGAARTGKIGDGKIFVIPVEKSIRIRTGD----------
+UniRef90_Q3AFZ0 IEIVTVDEKVEEIIKIISESARTGAIGDGKIFISEVLDAVRIRTGERGTAAITS--
+UniRef90_A7I508 IEIVSHDRDVEDLVSTIRESAWTGANGDGRIFVLPVEQAIRIRTGE----------
+UniRef90_P51604 ISLVVPDEDASLVVESIMKVNKTGQIGDGKIFVCPIEDAVRVRTKESGEDAI----
+UniRef90_B0NXT3 FEIVVSSEEWERTIEAIQKSAFTGEVGDGKIFSYEVRNVVKIRTGERDVDALQD--
+UniRef90_A8YG01 IEIVVEDKQVDMVVDKLISAARTGEIGDGKIFISPVEQIVRIRTGEKDLQAI----
+UniRef90_C0BMJ9 LSIVISDEFLEPTINAILEAACTGNVGDGKIFVSDVQDAYRIRTRENGKAGIN---
+UniRef90_Q466Y2 IEIAAPEDKIEEIIKIIQSSAYTGEIGDGKIFVTPIETVVRIRTGERNGDAL----
+UniRef90_O26760 IEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKAV----
+UniRef90_A0LYN2 LSIVVTDSFVEKTVETLLKAAHTGKVGDGKIFILPVEEAYRIRTKEKGGESL----
+UniRef90_C1YA75 VEILVDDEDAEDVVDVIVRAARTGKIGDGKVWTQPVETVIRVRTGERGPEAL----
+UniRef90_A8KX44 LELVVADSDAPDVVNVIRRTAASTSSGAGKIWVLPVEGLARIRTGERGADAL----
+UniRef90_C0EZB6 VDIVVSTVPPELVVEAAKKALYTGEYGDGKIFLYDVENVVRIRTNETGIAAL----
+UniRef90_Q11P32 IICVVSDENLEKCIDVIIETGSEGKVGDGKIFVYDVLDAIRMRTRTRGDDAI----
+UniRef90_A7B6Y7 FEVVVSSEEWEQTISAIQKAAFTGEVGDGKIFSYEIRSAVKIRTKETGYNAVQS--
+UniRef90_A7VSI5 LEIVVSKVPVQTV-DTARKVLYTGNIGDGKIFIYDVENVIKVRTGAEGYYALQD--
+UniRef90_A6G036 IEVVVPAARSEEVIAAIREVAASDRIGDGKIFVTPVLEAVRIRTDERGESAL----
+UniRef90_C0ES36 FEIVVSSEEWEKTIEAIEKAAYTGEPGDGKIFTYEIRHAQKIRTKETGYDAIQAT-
+UniRef90_B5IHX8 ITSVVTDQAVDQVVQAILTAARTGEIGDGKIVITPVENAIRIRTGESGDSTLA---
+UniRef90_B0MIE7 VESVMPEEVVEKVTKDIVNTVRTGEFGDGKIFISPVEEAIRIRTGETGKDAL----
+UniRef90_B4S395 LEIAVNEEFVDVAIDTIVDSARSGEIGDGKIFVTPLEQCVRIRTNERGGSAI----
+UniRef90_P51254 IEIIVSDDKVNSITEIIIKTAKTGEIGDGKIFISDVEQVIRIRTNDLNSAAL----
+UniRef90_P71524 LMLVVEDDAAENVIELITKTAYTGSFGDGKIFVSPVDEAYTVRTRSCG--------
+UniRef90_A8JI83 LDIVVSRAQVDAVVRLVAASAYTGEIGDGKIFVHPVAEVVRIRTAETG--------
+UniRef90_B0CD03 VEVKVDEEMVAPVVEKITFAARTGQVGDGKIFVSPLQKVVQVRTGEE---------
+UniRef90_B1QY06 VKMVIEDSKVEEVIEIISSIAKTGEVGDGKIFVIDICDCVRIRTGERGNEAL----
+UniRef90_Q30VL0 IEVGVPADKAEDALAALQTGAHTGREGDGIIFVQDVARTVRVRTGE----------
+UniRef90_A0T2Q5 ISIVVDDADVPFVVGIIMKVNRTGKPGDGKIFVLPVEEAIRIRTGEFGVEAIG---
+UniRef90_B3QXW9 LVVVVNDNMLQPTIDAIISANQTGKPGDGKIFVSTIEDAVRVRTGETGSAIL----
+UniRef90_B6YRQ4 INLVVRDINVEKAIKAIEKSAHTGEVGDGRIFVSTIDNAYSIRTGEQGDETL----
+UniRef90_B0MJN0 VEIVVCKVPVEKVVEVAKNALYTGKIGDGKIFVYDVENVIKVRTGEEAYEALQD--
+UniRef90_C2C1T3 VEIVVSTVPVEAVLEVVKNTLRTGEPGDGKVFVYPLSDVIKISTGEHGVAALQD--
+UniRef90_C1VTA2 VECVVEPEDADDVVEAIREGANTGEKGDGKIFVLPVFDAVQVRTGDRGTDAI----
+UniRef90_A3XNG5 LSIVVNDDFEQAAVAAILDAAATGEVGDGKIFVSDVQDAYRIRTGKKGPDTLN---
+UniRef90_P71525 LTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAAI----
+UniRef90_Q46C91 FSIVTRNEDVDTIIETIMKVNQTGDIGDGRIFICPVDDAIRVRTDEHGDNAL----
+UniRef90_B7BWA8 IDMFVRDEDLQKLIDTVVEVNKTNHAGDGKIFVLPVNDAIRVRTGEKGIEAI----
+UniRef90_Q7UGU6 LQIGVNEEFVQPTIDAIGRSGESGEIGDGKIFVLPMDDCVRIRTGERGGEAI----
+UniRef90_A3HVG6 LEIVTVDELVEPVINCILTEGKTGEVGDGKIFVYDVLEAHRIRNNDQGEQAL----
+UniRef90_A0YMH7 LEIVVEDEVCEFVVEKLVEAAQTGQIGDGKIFIQSMEHIIRTRTGESDLEAL----
+UniRef90_Q46A23 IEIAVKDEFLQTTVEAIERGSKDGYIGSGKIFVLPLENVMRIRTKETGNDAL----
+UniRef90_B4VJP7 LMVVVPDTEKEFVIRAILSSARTGAEGDGKIFVSPVEEVYTISSGKTDSS------
+UniRef90_B1QUW3 LLIVVKDEDKDDVVRVIMKNSRTGEYGDGKIFISKVDTAYTISTGKE---------
+UniRef90_A5N1U1 IWILAKDEDVKKIADIIIDINQTGHPGDGKIFVTKVTDVVRIRTGETQDEAV----
+UniRef90_A9D1T1 IELVIQDELLDRAIEVIVDTARTGKIGDGKIFVTEIERVIRIRTGEENEEAV----
+UniRef90_A6LUZ0 LLIAVKDEDKDDVIKVIIRNSRTGEFGDGKIFVAPIEEVYTVSSGKSG--------
+UniRef90_A6LUZ1 ITLVVKDDEVKTVVDTVISVNSTGTPGDGKIFVLPVEEVYRVRDGQIGEEAI----
+UniRef90_B8GEW5 FTILAHDEDVPRIVEAITKVNITEKVGDGIILVLPVDDAVRVRTGESGDAAI----
+UniRef90_C1FI34 VEIVVVREQCQEVVDVIVDAAQTGEIGDGKIFLSPVHDIVRIRTGEVGAAA-----
+UniRef90_C1TA34 LTILARDEDVKKIVDTVIKVNQEGNKGDGRIFIAPVIDAYRVRTAEKGEAAV----
+UniRef90_C1T440 LTVVVTDDLVPEVVKVITDTNKTGQPGDGKIFVLPMIDAVRVRTGEKGAKSI----
+UniRef90_A9A2H4 IVCVVDDPKLDEILDAIAGAACTGTKGDGKVYVSDICDALDICTKKRG--------
+UniRef90_Q97ME3 IIILAKDEDVKEIVDEIIEVNRTGNPGDGKIFVINIADAMRIRTEETGDMAI----
+
+QUERY UniRef90_C0EK60 UniRef90_Q21P81 UniRef90_Q47GI8 UniRef90_B9ZJ79 UniRef90_B5FAN6 UniRef90_B5ZIL8 UniRef90_B4RVM6 UniRef90_B2FHB8 UniRef90_P21193 UniRef90_B5JS45 UniRef90_Q07UM0 UniRef90_Q2RVB4 UniRef90_A9IPV3 UniRef90_A4TZT2 UniRef90_B3DVA4 UniRef90_C1STD4 UniRef90_A7HGG9 UniRef90_A9BCF1 UniRef90_B4U911 UniRef90_B1ZSX2 UniRef90_Q7X1L4 UniRef90_Q1NW36 UniRef90_C0GRX0 UniRef90_B8DJ84 UniRef90_Q6ARG9 UniRef90_C1W154 UniRef90_C1UII8 UniRef90_UPI000 IEIVVCKIPTETVVATIKTALYTGHIGDGKIFVHAVENVHRISTGEEGYDALQD--VEMV
+UniRef90_C1T022 UniRef90_Q46G48 UniRef90_A2RJQ2 UniRef90_Q8KF33 UniRef90_B1HTS9 UniRef90_A2SPS9 UniRef90_C0EAH3 UniRef90_A7I8Z1 UniRef90_Q3AFZ0 UniRef90_A7I508 UniRef90_P51604 UniRef90_B0NXT3 UniRef90_A8YG01 UniRef90_C0BMJ9 UniRef90_Q466Y2 UniRef90_O26760 UniRef90_A0LYN2 UniRef90_C1YA75 UniRef90_A8KX44 UniRef90_C0EZB6 UniRef90_Q11P32 UniRef90_A7B6Y7 UniRef90_A7VSI5 UniRef90_A6G036 UniRef90_C0ES36 UniRef90_B5IHX8 UniRef90_B0MIE7 UniRef90_B4S395 UniRef90_P51254 UniRef90_P71524 UniRef90_A8JI83 UniRef90_B0CD03 UniRef90_B1QY06 UniRef90_Q30VL0 UniRef90_A0T2Q5 UniRef90_B3QXW9 UniRef90_B6YRQ4 UniRef90_B0MJN0 UniRef90_C2C1T3 UniRef90_C1VTA2 UniRef90_A3XNG5 UniRef90_P71525 UniRef90_Q46C91 UniRef90_B7BWA8 UniRef90_Q7UGU6 UniRef90_A3HVG6 UniRef90_A0YMH7 UniRef90_Q46A23 UniRef90_B4VJP7 UniRef90_B1QUW3 UniRef90_A5N1U1 UniRef90_A9D1T1 UniRef90_A6LUZ0 UniRef90_A6LUZ1 UniRef90_B8GEW5 UniRef90_C1FI34 UniRef90_C1TA34 UniRef90_C1T440 UniRef90_A9A2H4 UniRef90_Q97ME3
+QUERY UniRef90_C0EK60 UniRef90_Q21P81 UniRef90_Q47GI8 UniRef90_B9ZJ79 UniRef90_B5FAN6 UniRef90_B5ZIL8 UniRef90_B4RVM6 UniRef90_B2FHB8 UniRef90_P21193 UniRef90_B5JS45 UniRef90_Q07UM0 UniRef90_Q2RVB4 UniRef90_A9IPV3 UniRef90_A4TZT2 UniRef90_B3DVA4 UniRef90_C1STD4 UniRef90_A7HGG9 UniRef90_A9BCF1 UniRef90_B4U911 UniRef90_B1ZSX2 UniRef90_Q7X1L4 UniRef90_Q1NW36 UniRef90_C0GRX0 UniRef90_B8DJ84 UniRef90_Q6ARG9 UniRef90_C1W154 UniRef90_C1UII8 UniRef90_UPI000 IEESRLDEIVDVIIDSCSTDTIGDGK--------------------------
+UniRef90_C1T022 UniRef90_Q46G48 UniRef90_A2RJQ2 UniRef90_Q8KF33 UniRef90_B1HTS9 UniRef90_A2SPS9 UniRef90_C0EAH3 UniRef90_A7I8Z1 UniRef90_Q3AFZ0 UniRef90_A7I508 UniRef90_P51604 UniRef90_B0NXT3 UniRef90_A8YG01 UniRef90_C0BMJ9 UniRef90_Q466Y2 UniRef90_O26760 UniRef90_A0LYN2 UniRef90_C1YA75 UniRef90_A8KX44 UniRef90_C0EZB6 UniRef90_Q11P32 UniRef90_A7B6Y7 UniRef90_A7VSI5 UniRef90_A6G036 UniRef90_C0ES36 UniRef90_B5IHX8 UniRef90_B0MIE7 UniRef90_B4S395 UniRef90_P51254 UniRef90_P71524 UniRef90_A8JI83 UniRef90_B0CD03 UniRef90_B1QY06 UniRef90_Q30VL0 UniRef90_A0T2Q5 UniRef90_B3QXW9 UniRef90_B6YRQ4 UniRef90_B0MJN0 UniRef90_C2C1T3 UniRef90_C1VTA2 UniRef90_A3XNG5 UniRef90_P71525 UniRef90_Q46C91 UniRef90_B7BWA8 UniRef90_Q7UGU6 UniRef90_A3HVG6 UniRef90_A0YMH7 UniRef90_Q46A23 UniRef90_B4VJP7 UniRef90_B1QUW3 UniRef90_A5N1U1 UniRef90_A9D1T1 UniRef90_A6LUZ0 UniRef90_A6LUZ1 UniRef90_B8GEW5 UniRef90_C1FI34 UniRef90_C1TA34 UniRef90_C1T440 UniRef90_A9A2H4 UniRef90_Q97ME3
--- /dev/null
+>QUERY/1-116
+MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLK
+LEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADAISAWS
+>UniRef90_C0EK60/1-112
+MKKIEAIIKPFKLDDVREILTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKVK
+IELVLADDKVDQAVDAILETAHSGKIGDGKIFIYPVEEAIRIRTGERSEAAL----
+>UniRef90_Q21P81/1-112
+MKLITAVIKPFKLDDVRNALSEIGVQGMTVTEVKGFGRQKGHTELYRGAEYVIDFLPKVK
+LELVLGDELIDQAVEAISKAAQTGKIGDGKIFITPCEEVIRIRTGETGPEAV----
+>UniRef90_Q47GI8/1-112
+MKKIEAIIKPFKLDEVREALSEIGISGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK
+IEIVVNSNNVEPAIDAIIKAARTGKIGDGKIFVMPVEQVVRIRTGETDEAAV----
+>UniRef90_B9ZJ79/1-112
+MKKIEAIIKPFKLEDVREALTEMGIAGMTATEVQGFGRQKGHTELYRGAEYVVDFLPKVK
+LELVVDDDRVDACIDAIVKASRTGKIGDGKIFVSDMARVVRIRTGEEGSEAL----
+>UniRef90_B5FAN6/1-112
+MKIINAIIKPFKLDDVREALADAGVDGMTVSEVKGFGRQKGHTELYRGAEYQVDFLPKVK
+LEIAVQAEGVDRIVEAISKAAHTGKIGDGKIFVYDLQQAVRIRTGETDTEAL----
+>UniRef90_B5ZIL8/1-112
+MKKIEAIIKPFKLDEVKDALHEIGLMGISVTEAKGFGRQKGHTELYRGAEYIVDFLPKVK
+LEIVCADNLVDRAVETIMAAARTGRIGDGKIFILPVEDVIRIRTGEHGEEAI----
+>UniRef90_B4RVM6/1-112
+MKKIEAIIKPFKMDDVREALAEVGIAGMTVSEVKGFGRQKGHTELYRGAEYQVDFLPKIK
+IELVLDDDRVEQAVEAIQSSAKTGKIGDGKIFVYSVESAVRIRTGEQNEDAI----
+>UniRef90_B2FHB8/1-112
+MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK
+IETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL----
+>UniRef90_P21193/1-112
+MKKIEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK
+IEVVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKGGDAI----
+>UniRef90_B5JS45/1-112
+MKKIEAVIKPFKLDDVRDALADIGVSGMTVTEVKGFGRQKGHTETYRGAEYVVDFLPKLK
+LEIVVAEKDADACVESITNAAKTGQIGDGKIFVSDVERTIRIRTGEEDESAI----
+>UniRef90_Q07UM0/1-112
+MKLVVAIIKPFKLDEVRQALTDVGVHGMTVTEVKGYGRQRGHTEIYRGAEYLVNFLPKLR
+IEVGVADTLVDKAVEAITRSARTGQIGDGKIFVTPLDHALRIRTGETNADAL----
+>UniRef90_Q2RVB4/1-112
+MKFVIAITKPFKLDEVREALGALGIQGMTVTEVKGFGRQKGQTEVYRGAEYVVNFLPKVK
+IELAVPDNLLDQVVETIQSTAQTGKIGDGKIFVFDLGEAVRIRTGERGEEAL----
+>UniRef90_A9IPV3/1-112
+MKLIIAIIKPFKLDEVRVALSGIGVQGLTVTEVKGFGRQKGHTELYRGAEYAVDFLPKLR
+VEAAVPDHLVDQVIDVIEQAARTGKIGDGKIFTAPLEQVIRIRTGESGEAAL----
+>UniRef90_A4TZT2/1-112
+MKLIIAIIKPFKLDEVREALTQLGIQGLTATEVKGFGRQKGQTEIYRAAEYVVSFVPKIK
+IELVVNDDVVDRAVEAIQAAARTDKIGDGKIFVMDVAHALRIRTGEADTEAL----
+>UniRef90_B3DVA4/1-110
+--KIEAIIKPFKLEEVKEALTEIGIAGLTVTEVKGFGRQKGHTEIYRGSEYTVDFLPKVK
+VEIVLTEDILPKAVEAIIKSAKTGKIGDGKIFVLPVSEAIRIRTEEKGENAI----
+>UniRef90_C1STD4/1-112
+MRKIEIITRPFKLDEVKQRLTKLGIQGMTVTEVKGFGRQRGHKEIYRGAEYQVDFVAKVK
+IEIVVDDGLVEEIVSTVQEGARTGKVGDGKIFISPVDNAVRIRTGESGAEAL----
+>UniRef90_A7HGG9/1-112
+MKRIEAIIRPSKLEDVRRLLSHPWISAMTVSEVRGAGRQKGHAELYRGAEYVIDLIPKLK
+LEIVLPDPLVDRVVADLESWLRTGRIGDGKIFVEPLDDAVRVRTGERGEDAL----
+>UniRef90_A9BCF1/1-112
+MKKIEAIIRPFKLEDVKVALVNSGIVGMTVSEVRGFGRQKGQVERYRGSEFTVEFLQKLK
+IEIVVADESVPTVLTAIAEAAKTGEIGDGKIFISPVESVVRIRTGELDGSAL----
+>UniRef90_B4U911/1-112
+MKKVEAIIKPFKLDEVKDALVEIGIGGMTITEVKGFGQQKGKTEIYRATEYVIDFLPKIK
+IETVVKDSEVEKVVQTILKSAQTGKVGDGKIFIYNVEETVRIRTGERGESAI----
+>UniRef90_B1ZSX2/1-112
+MKLVTAIIKPFKLEEIKAALAEIQVEGMTVTEVKGFGRQKGHTEIYRGTEYTVDFLPKVR
+IEILAADESVPKILETIISTAKTGKIGDGKIFISAAEDVVRIRTDERGEAAL----
+>UniRef90_Q7X1L4/1-112
+MKKVEAIIKPFKLDAVKEAVTALGVYGMTVTEVKGYGQQKGHTEQYRGAEYVVEFITKIK
+VEIVVADAKVSPVLEAIRRTAMSNSIGDGKVFVSPVETALRIRTGETGDAAL----
+>UniRef90_Q1NW36/1-112
+MKKVEAIIKPFKLDAVKEAVTALGIHGMTVSEVKGFGRQKGHTEVYRGAEYVVDFVAKIK
+VEIVVESEKASLLVETITQAARNGNIGDGKIFVTPVESVCRIRTGELDQDAI----
+>UniRef90_C0GRX0/1-112
+MKKLEIITRPFKVEAVKEALAGMGIKGMTLTDVKGFGRQMGHKEIYRGAEYDVDFLPKVK
+IEVILDDANVDQAVEAAIKAARTDKVGDGKIFVYSVENAIRIRTGESGDEAI----
+>UniRef90_B8DJ84/1-112
+MKKIEAIIKPFKLDAVKDALIGIGVFGLTVTEVRGYGRQRGHVETYRGLEYEVQFNSKLK
+IETVVPDGMSDQVVKAITTAARTGSIGDGKIFISSLEEVIRIRTGEEGTDAI----
+>UniRef90_Q6ARG9/1-112
+MKKIEAIIKPFKLEEIKEALTELAITGMTISEVKGYGRQKGHKEMYRGAEYSIDFNPKLK
+IELVVRAEIADKVVEKIRLAARTGKIGDGKIFVLPIEEVVRVRTGEQGREAI----
+>UniRef90_C1W154/1-112
+MKLVTAIIQPHRLDAVKSALEAAGIRGMTVSEASGYGRQKGHTEVYRGAEYTIDLVPKIR
+LEILVDDPDAHRVGEVITQAAHTGRIGDGKVWTIPVDSVTRVRTGEEGPSAL----
+>UniRef90_C1UII8/1-112
+MKLVTAIVKPFKLDDVKNALELIGIAGLTVSEVQGFGRQRGHTEVYRGAEYQVDFVPKVR
+IEVVVGEIEAARVVDAIVEAASTGQIGDGKVWVTTIDEIVRVRTGERGADAL----
+>UniRef90_UPI000/1-118
+--KVTVITNQAKFYQLKTSLEAIGITGMTVIQVLGFGIQKGQPEYYRGNPIEATLLPKVK
+MKKIEAIIRPEAFQTLKDGLSAVGISGLTVTEAAGCGKQQGKKGVFRGTSFEIQLV
+>UniRef90_C1T022/1-113
+MKLVIAYIRPECLNAVKQELYAKKIYNMSVTNVLGSGRQKGFTETYRGVVMEVNLLKKLR
+LEIGVNDDFAEQAVEAINAGARTGKEGDGVIFVLECAAAVRIRTQETGPAAMG---
+>UniRef90_Q46G48/1-112
+MKYIIAMIRPERLDAVKRELQKLEVNRLTVSSVAGYGAQKGHLEIYRATEHEANLLEKVK
+IEIAVEDHFLKSVIEAIKTGAKDGYIGSGKIFVLPLENVIRIRTNETGPEAL----
+>UniRef90_A2RJQ2/1-112
+MKKIEAIIRTDKLEDLKKALSDNGVHGMTVSQVLGYGEQKGFAEYVRGQRIETTLLSKIK
+IEIVSIDEKVDQIVNVITKAVRTGEVGDGKIFIQPVERVIRIRTSEEDAQAL----
+>UniRef90_Q8KF33/1-112
+MKKIEAIIRTSQYEAVKKALHEIDIDFFTWWDVTGQGNDKKHTEIYRGTVRDTSYISRRY
+LSIVVRDVNLQKTVDCLIKNARTGEVGDGKIFVSDIEQSYRIRTGESGDESL----
+>UniRef90_B1HTS9/1-112
+MKKIEVIIRPEVFGAVRDGLAQQGIAGLSVSEIAGCGRQLGRTGLFRGNTYEIEFLPKLK
+LEMIVDDSKVDGIVEILLREAATGKVGDGKIFIYPVEQAIRIRTKEVGSIAV----
+>UniRef90_A2SPS9/1-106
+MKMITAIIRPEKVDEVLNALEQNNIPGVTITEVLGRGEQGGVCLQYRAGKMQVKTLPKTK
+LEIVVPDKDVDTLIKVIREHARTGKKGDGRIFVLPVEAAAWVRTDE----------
+>UniRef90_C0EAH3/1-111
+--KLVIVTRQSKFEELKAAMNAIEVTGMTVTQVIGCGTQKGATEFYRGVPVEMNLLPKIK
+VEIVVCRVPVRTVIETAKKVLYTGHYGDGKIFVYDIENVVKVRTGEEGCAALQ---
+>UniRef90_A7I8Z1/1-104
+--MISAIIKPERFEFVKKALEDKGYVSMTITEVKGRGEQKGISLEYRGGKMTVDLLPKVK
+IEIVIRDKDLEDVIATLTGAARTGKIGDGKIFVIPVEKSIRIRTGD----------
+>UniRef90_Q3AFZ0/1-114
+MKKIEALIRPQKLGEVKEALNKLGISGMTVTEVVGCGRQKGQKEIYRGIEYEINLLPKVK
+IEIVTVDEKVEEIIKIISESARTGAIGDGKIFISEVLDAVRIRTGERGTAAITS--
+>UniRef90_A7I508/1-106
+MKLVIALIRPERFGAVKKALEDKGYIGMTTAEAKGRGAQKGIALVYRGGRLTIDILVKVR
+IEIVSHDRDVEDLVSTIRESAWTGANGDGRIFVLPVEQAIRIRTGE----------
+>UniRef90_P51604/1-112
+MKEIIAIIRPNKINRTKEVLDALGFSSMTANAVFGRGRQKAIVGELREEEGSMRYIPKRM
+ISLVVPDEDASLVVESIMKVNKTGQIGDGKIFVCPIEDAVRVRTKESGEDAI----
+>UniRef90_B0NXT3/1-112
+--KINAIVREEKFEDVKEALNKIGVNGITVSQVMGCGAQKGFTEVIRGTKVDMMMRPKIK
+FEIVVSSEEWERTIEAIQKSAFTGEVGDGKIFSYEVRNVVKIRTGERDVDALQD--
+>UniRef90_A8YG01/1-96
+----------------KIALVNAGIVGMTVSEVRGFGRQKGQSERYRGSEYTVEFLQKLK
+IEIVVEDKQVDMVVDKLISAARTGEIGDGKIFISPVEQIVRIRTGEKDLQAI----
+>UniRef90_C0BMJ9/1-112
+MKKVEAIIRKSKFDDVKKALHAIEVNFFSYWDVTGVGNEKQ-GHVYRGISYSTSDIQRRI
+LSIVISDEFLEPTINAILEAACTGNVGDGKIFVSDVQDAYRIRTRENGKAGIN---
+>UniRef90_Q466Y2/1-112
+MCKIEAIIKPMKLHEVKDALEEAGYPSLTVTDVKGRGQQKGIVQQWRGKKYCVDLLPKTK
+IEIAAPEDKIEEIIKIIQSSAYTGEIGDGKIFVTPIETVVRIRTGERNGDAL----
+>UniRef90_O26760/1-112
+MKEIVAIIRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRIDLLPKTK
+IEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKAV----
+>UniRef90_A0LYN2/1-111
+MKKIEAIIRKSEFDETKEALHSIGVTFFSYWDVTGVGNEKV-GHVYRGVSYSTADIQRRY
+LSIVVTDSFVEKTVETLLKAAHTGKVGDGKIFILPVEEAYRIRTKEKGGESL----
+>UniRef90_C1YA75/1-112
+MKVVTAVIKPFKLDEVRAALLAFGVQGMTVSESSGYGRQRGHTEVYRGAEYTVELLPKVR
+VEILVDDEDAEDVVDVIVRAARTGKIGDGKVWTQPVETVIRVRTGERGPEAL----
+>UniRef90_A8KX44/1-112
+MKLVTAIVRPHRVDDVRAALTTYGVHGITVSQVTGFGLEMWRTQTYRGNAFHDESTSNIR
+LELVVADSDAPDVVNVIRRTAASTSSGAGKIWVLPVEGLARIRTGERGADAL----
+>UniRef90_C0EZB6/1-110
+--KLTIMCKEDRFAILKDAMSQIGVTGMTVSHVMGCGTQKGKTGQYRGVKIDMNLLPQLQ
+VDIVVSTVPPELVVEAAKKALYTGEYGDGKIFLYDVENVVRIRTNETGIAAL----
+>UniRef90_Q11P32/1-112
+MKKIEAIVKPSKLKAIQAGLIKIGIPCMTVVPVKGVGLQQGFPEIYRGTEKSIVLLSKVM
+IICVVSDENLEKCIDVIIETGSEGKVGDGKIFVYDVLDAIRMRTRTRGDDAI----
+>UniRef90_A7B6Y7/1-112
+--KIEAIVREEKFEQVKSALQDIQVNGVTISQVMGYGTQRGYTEIVRGSEVDILLHPKIK
+FEVVVSSEEWEQTISAIQKAAFTGEVGDGKIFSYEIRSAVKIRTKETGYNAVQS--
+>UniRef90_A7VSI5/1-111
+--KVVILFNQDKFIELKDAMNAIGVTGMTVIHVMGCGVQKGNTRYYRGVKLDIVLLPKIK
+LEIVVSKVPVQTV-DTARKVLYTGNIGDGKIFIYDVENVIKVRTGAEGYYALQD--
+>UniRef90_A6G036/1-110
+--KVEAMIRPFKLDDVKERLTELEVGGMTVTEVKGFGRTGGKTEFYRGSAYVIDFVPKIK
+IEVVVPAARSEEVIAAIREVAASDRIGDGKIFVTPVLEAVRIRTDERGESAL----
+>UniRef90_C0ES36/1-115
+MIKVEAYVREDKFEDVKAALNAIGVNGLTVSQVMGCGIQRGYKEIVRGMQVDMQMQPKIK
+FEIVVSSEEWEKTIEAIEKAAYTGEPGDGKIFTYEIRHAQKIRTKETGYDAIQAT-
+>UniRef90_B5IHX8/1-113
+MKQIQAIVRPEKLDAVKDALVEIGINGITVTAVQGFGKQMGHTEVYRGVKVEAKLLTKMQ
+ITSVVTDQAVDQVVQAILTAARTGEIGDGKIVITPVENAIRIRTGESGDSTLA---
+>UniRef90_B0MIE7/1-103
+---------PEKLTDVKHILEAHKVSGLMISNIMGYGNQKGFTQKYRGNELNSNLLPKIK
+VESVMPEEVVEKVTKDIVNTVRTGEFGDGKIFISPVEEAIRIRTGETGKDAL----
+>UniRef90_B4S395/1-111
+MKLITAIIQEDKLDQVREALIQANISRISVSRISGHGRQE-DIDIYRGRKIAPNLRPKIK
+LEIAVNEEFVDVAIDTIVDSARSGEIGDGKIFVTPLEQCVRIRTNERGGSAI----
+>UniRef90_P51254/1-112
+MKKIEAIIRPFKLNEVKLALVKGGIGGMTVVKVSGFGRQKGQTERYKGSEYSIDIIDKIK
+IEIIVSDDKVNSITEIIIKTAKTGEIGDGKIFISDVEQVIRIRTNDLNSAAL----
+>UniRef90_P71524/1-104
+MKMIRAVVRPSKAEEVVDALAESGCVALTKMDVIGRGKQKG----IKIDQIYYDELPKTM
+LMLVVEDDAAENVIELITKTAYTGSFGDGKIFVSPVDEAYTVRTRSCG--------
+>UniRef90_A8JI83/1-105
+---IEAIFRPWRLPFVIDTLSKYGIRGLTNTPVKGVGVQGGSRERYAGTEFGPNLVDKEK
+LDIVVSRAQVDAVVRLVAASAYTGEIGDGKIFVHPVAEVVRIRTAETG--------
+>UniRef90_B0CD03/1-107
+MRTITAFIRPQQCDQVKLVLVQLGIIDITLSDVKGFGRQQGSLQQYRGSDAEIRLHRKLK
+VEVKVDEEMVAPVVEKITFAARTGQVGDGKIFVSPLQKVVQVRTGEE---------
+>UniRef90_B1QY06/1-112
+MKRIEAIIRPSKLEEIKEALKNNNINGVTISQVMGCGKQLGWKEYHRGTELITNVLPKIE
+VKMVIEDSKVEEVIEIISSIAKTGEVGDGKIFVIDICDCVRIRTGERGNEAL----
+>UniRef90_Q30VL0/1-106
+MKLLIAYIRPEKLSTVKKALYARGIYAMSVTNALGSGQQKGFTETYRGIVTEVNLLKKVR
+IEVGVPADKAEDALAALQTGAHTGREGDGIIFVQDVARTVRVRTGE----------
+>UniRef90_A0T2Q5/1-113
+MKEVLAIIRPNMVSKTGKALEAVGFPAMTVIRCFGRGKEKGYIDAGEKLGMRMKYIPKRM
+ISIVVDDADVPFVVGIIMKVNRTGKPGDGKIFVLPVEEAIRIRTGEFGVEAIG---
+>UniRef90_B3QXW9/1-112
+MKEITAIIRINKMNETKKALIKAGISSFTASRVLGRGKGQVHYDLLKGAAEGYELVSKRY
+LVVVVNDNMLQPTIDAIISANQTGKPGDGKIFVSTIEDAVRVRTGETGSAIL----
+>UniRef90_B6YRQ4/1-111
+MKKIEAIIRKTRFDEVKEALLEADIEWFSYSDVRGVGKARQ-ERIYRGVVYDTSSIERIQ
+INLVVRDINVEKAIKAIEKSAHTGEVGDGRIFVSTIDNAYSIRTGEQGDETL----
+>UniRef90_B0MJN0/1-114
+MTKVDIIANQEKFEVLKHALSSIGITGMTVSHVMGCGMQKGSTEFYRGVPVDARLLPKMK
+VEIVVCKVPVEKVVEVAKNALYTGKIGDGKIFVYDVENVIKVRTGEEAYEALQD--
+>UniRef90_C2C1T3/1-112
+--KIEIITRPNRFDVFQKALKEIGVSGLTVTKAVGTGLEKGMIELYRGTIKENNVHERMK
+VEIVVSTVPVEAVLEVVKNTLRTGEPGDGKVFVYPLSDVIKISTGEHGVAALQD--
+>UniRef90_C1VTA2/1-110
+--LVMAIVRPEKLSDVKAALAEAGAPSLTVTQVSGRGSQPAKTGQWRGEEYVIDLHQKIK
+VECVVEPEDADDVVEAIREGANTGEKGDGKIFVLPVFDAVQVRTGDRGTDAI----
+>UniRef90_A3XNG5/1-112
+MKKIEAIIRKSKFTAVKKALHDKGVNFFSYWDVTGLGNEKE-GHVYRGVSYSTSDIQRRY
+LSIVVNDDFEQAAVAAILDAAATGEVGDGKIFVSDVQDAYRIRTGKKGPDTLN---
+>UniRef90_P71525/1-111
+MKEIIAIIRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELGFEV-DMRYIPKTM
+LTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAAI----
+>UniRef90_Q46C91/1-112
+MKEIIAIIRPKKVVPTKEALEKLGVPSLTAIPVFGRGKQKGIATELDIAGRRMEYIPKRL
+FSIVTRNEDVDTIIETIMKVNQTGDIGDGRIFICPVDDAIRVRTDEHGDNAL----
+>UniRef90_B7BWA8/1-112
+MKEVMIILRPKMYFPTKDALDQAGFHSMTIREIIGRGKCPVHYDYDEGAPVKHRLVAKRM
+IDMFVRDEDLQKLIDTVVEVNKTNHAGDGKIFVLPVNDAIRVRTGEKGIEAI----
+>UniRef90_Q7UGU6/1-112
+MKLIIAIVQPSKLDAIKEALTRVEVHRLTVVDCQGFGRQRGQTGSMRGRDYGVSLLRKVQ
+LQIGVNEEFVQPTIDAIGRSGESGEIGDGKIFVLPMDDCVRIRTGERGGEAI----
+>UniRef90_A3HVG6/1-112
+MKKIEAIIRTSRFEQIHSCVAGLGVKFLTFYEVKGMGLEHAKQQTYRGVAYEPTYIPRTK
+LEIVTVDELVEPVINCILTEGKTGEVGDGKIFVYDVLEAHRIRNNDQGEQAL----
+>UniRef90_A0YMH7/1-112
+MKRIEALIRPVQFDSVVTALVEAGIVGMSVTNVRGYGRQKGQTESYRGVKHVIEFHPKMK
+LEIVVEDEVCEFVVEKLVEAAQTGQIGDGKIFIQSMEHIIRTRTGESDLEAL----
+>UniRef90_Q46A23/1-112
+MKYIIAMIRPEKLDSVKKEIQKIGAHGLTVSSISGYGAQGGHLNVDRTKKYEANLLDKVK
+IEIAVKDEFLQTTVEAIERGSKDGYIGSGKIFVLPLENVMRIRTKETGNDAL----
+>UniRef90_B4VJP7/1-90
+----------------MKALLDAGYPAVTKVDVFGRGKQRG----LKIGNVLYDELPKAL
+LMVVVPDTEKEFVIRAILSSARTGAEGDGKIFVSPVEEVYTISSGKTDSS------
+>UniRef90_B1QUW3/1-103
+MYLVRAIIRTEKVNGVLSELVDAGFPQVTKMDVFGRGKQKG----IQVGEVHYDELPKEM
+LLIVVKDEDKDDVVRVIMKNSRTGEYGDGKIFISKVDTAYTISTGKE---------
+>UniRef90_A5N1U1/1-112
+MKEIMAVIRMNMVGKTKKALAENGFPSITCKDVLGRGKKMVEEELHRIEDESYRLISKRL
+IWILAKDEDVKKIADIIIDINQTGHPGDGKIFVTKVTDVVRIRTGETQDEAV----
+>UniRef90_A9D1T1/1-65
+-----------------------------------------------GAEYMVDFLPKVK
+IELVIQDELLDRAIEVIVDTARTGKIGDGKIFVTEIERVIRIRTGEENEEAV----
+>UniRef90_A6LUZ0/1-104
+MYMIRAIIRPERVSTVLSELLDAGFPEVTKMAVYGRGKQKG----IKVGEVYYDELPKEM
+LLIAVKDEDKDDVIKVIIRNSRTGEFGDGKIFVAPIEEVYTVSSGKSG--------
+>UniRef90_A6LUZ1/1-112
+MKEVMCIIRLNKVNKTKEALAEAGFPSITCRKVLGRGKKSALVEAYMETGEVPRLIPKRF
+ITLVVKDDEVKTVVDTVISVNSTGTPGDGKIFVLPVEEVYRVRDGQIGEEAI----
+>UniRef90_B8GEW5/1-112
+MKEIMAIVRMKKTGVTKRALVETGVAGFTALKVLGRGKLVEDTAVIEPAEQEVRFFPRRL
+FTILAHDEDVPRIVEAITKVNITEKVGDGIILVLPVDDAVRVRTGESGDAAI----
+>UniRef90_C1FI34/1-109
+--QVRAMVRPWRLSGVIDALNKYGIRGLTTYTVHGAGVQIGTVERYAGSTFDANLVEKVV
+VEIVVVREQCQEVVDVIVDAAQTGEIGDGKIFLSPVHDIVRIRTGEVGAAA-----
+>UniRef90_C1TA34/1-112
+MKEIIAIIRMNKVNITKKALADVGVCGLHAIKVMGRGKQLGVREEIDGLSGGTRLIPKRL
+LTILARDEDVKKIVDTVIKVNQEGNKGDGRIFIAPVIDAYRVRTAEKGEAAV----
+>UniRef90_C1T440/1-112
+MKEVIAVIRMNMMNKTKKALQDAGVVAFFAHEAFGRGKGLVDVKPLEGARKGIELYPKRM
+LTVVVTDDLVPEVVKVITDTNKTGQPGDGKIFVLPMIDAVRVRTGEKGAKSI----
+>UniRef90_A9A2H4/1-100
+MKKVEAIVNESAQNAVIDAMRKVGISGVTVSKVQGQGAQD--------PPLVGDFFSRVL
+IVCVVDDPKLDEILDAIAGAACTGTKGDGKVYVSDICDALDICTKKRG--------
+>UniRef90_Q97ME3/1-112
+MKEIMAIIRMNMVEKTKEALLKGGNPAITCLKVLGRGRQKVDIEDYKMAEELSELISKRL
+IIILAKDEDVKEIVDEIIEVNRTGNPGDGKIFVINIADAMRIRTEETGDMAI----
--- /dev/null
+
+NoName MSF: 89 Type: P Thu Sep 12 11:18:51 2013 Check: 00 ..
+
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+ Name: UniRef90_P71525/1-111 Len: 116 Check: 6955 Weight: 1.00
+ Name: UniRef90_Q46C91/1-112 Len: 116 Check: 9645 Weight: 1.00
+ Name: UniRef90_B7BWA8/1-112 Len: 116 Check: 484 Weight: 1.00
+ Name: UniRef90_Q7UGU6/1-112 Len: 116 Check: 2772 Weight: 1.00
+ Name: UniRef90_A3HVG6/1-112 Len: 116 Check: 3382 Weight: 1.00
+ Name: UniRef90_A0YMH7/1-112 Len: 116 Check: 3597 Weight: 1.00
+ Name: UniRef90_Q46A23/1-112 Len: 116 Check: 2151 Weight: 1.00
+ Name: UniRef90_B4VJP7/1-90 Len: 116 Check: 2329 Weight: 1.00
+ Name: UniRef90_B1QUW3/1-103 Len: 116 Check: 8604 Weight: 1.00
+ Name: UniRef90_A5N1U1/1-112 Len: 116 Check: 2241 Weight: 1.00
+ Name: UniRef90_A9D1T1/1-65 Len: 116 Check: 8348 Weight: 1.00
+ Name: UniRef90_A6LUZ0/1-104 Len: 116 Check: 2978 Weight: 1.00
+ Name: UniRef90_A6LUZ1/1-112 Len: 116 Check: 3539 Weight: 1.00
+ Name: UniRef90_B8GEW5/1-112 Len: 116 Check: 751 Weight: 1.00
+ Name: UniRef90_C1FI34/1-109 Len: 116 Check: 3899 Weight: 1.00
+ Name: UniRef90_C1TA34/1-112 Len: 116 Check: 116 Weight: 1.00
+ Name: UniRef90_C1T440/1-112 Len: 116 Check: 857 Weight: 1.00
+ Name: UniRef90_A9A2H4/1-100 Len: 116 Check: 7883 Weight: 1.00
+ Name: UniRef90_Q97ME3/1-112 Len: 116 Check: 8399 Weight: 1.00
+
+//
+
+
+ 1 50
+QUERY/1-116 MKKIEAIIRP FKLDEVKIAL VNAGIVGMTV SEVRGFGRQK GQTERYRGSE
+UniRef90_C0EK60/1-112 MKKIEAIIKP FKLDDVREIL TEIGITGMTV SEVKGFGRQK GHTEIYRGAE
+UniRef90_Q21P81/1-112 MKLITAVIKP FKLDDVRNAL SEIGVQGMTV TEVKGFGRQK GHTELYRGAE
+UniRef90_Q47GI8/1-112 MKKIEAIIKP FKLDEVREAL SEIGISGLTV TEVKGFGRQK GHTELYRGAE
+UniRef90_B9ZJ79/1-112 MKKIEAIIKP FKLEDVREAL TEMGIAGMTA TEVQGFGRQK GHTELYRGAE
+UniRef90_B5FAN6/1-112 MKIINAIIKP FKLDDVREAL ADAGVDGMTV SEVKGFGRQK GHTELYRGAE
+UniRef90_B5ZIL8/1-112 MKKIEAIIKP FKLDEVKDAL HEIGLMGISV TEAKGFGRQK GHTELYRGAE
+UniRef90_B4RVM6/1-112 MKKIEAIIKP FKMDDVREAL AEVGIAGMTV SEVKGFGRQK GHTELYRGAE
+UniRef90_B2FHB8/1-112 MKLISAIIRP FKLDEVREAL SDAGVSGITV TEVKGFGRQK GHTELYRGAE
+UniRef90_P21193/1-112 MKKIEAIIKP FKLDEVKEAL HEVGIKGITV TEAKGFGRQK GHTELYRGAE
+UniRef90_B5JS45/1-112 MKKIEAVIKP FKLDDVRDAL ADIGVSGMTV TEVKGFGRQK GHTETYRGAE
+UniRef90_Q07UM0/1-112 MKLVVAIIKP FKLDEVRQAL TDVGVHGMTV TEVKGYGRQR GHTEIYRGAE
+UniRef90_Q2RVB4/1-112 MKFVIAITKP FKLDEVREAL GALGIQGMTV TEVKGFGRQK GQTEVYRGAE
+UniRef90_A9IPV3/1-112 MKLIIAIIKP FKLDEVRVAL SGIGVQGLTV TEVKGFGRQK GHTELYRGAE
+UniRef90_A4TZT2/1-112 MKLIIAIIKP FKLDEVREAL TQLGIQGLTA TEVKGFGRQK GQTEIYRAAE
+UniRef90_B3DVA4/1-110 --KIEAIIKP FKLEEVKEAL TEIGIAGLTV TEVKGFGRQK GHTEIYRGSE
+UniRef90_C1STD4/1-112 MRKIEIITRP FKLDEVKQRL TKLGIQGMTV TEVKGFGRQR GHKEIYRGAE
+UniRef90_A7HGG9/1-112 MKRIEAIIRP SKLEDVRRLL SHPWISAMTV SEVRGAGRQK GHAELYRGAE
+UniRef90_A9BCF1/1-112 MKKIEAIIRP FKLEDVKVAL VNSGIVGMTV SEVRGFGRQK GQVERYRGSE
+UniRef90_B4U911/1-112 MKKVEAIIKP FKLDEVKDAL VEIGIGGMTI TEVKGFGQQK GKTEIYRATE
+UniRef90_B1ZSX2/1-112 MKLVTAIIKP FKLEEIKAAL AEIQVEGMTV TEVKGFGRQK GHTEIYRGTE
+UniRef90_Q7X1L4/1-112 MKKVEAIIKP FKLDAVKEAV TALGVYGMTV TEVKGYGQQK GHTEQYRGAE
+UniRef90_Q1NW36/1-112 MKKVEAIIKP FKLDAVKEAV TALGIHGMTV SEVKGFGRQK GHTEVYRGAE
+UniRef90_C0GRX0/1-112 MKKLEIITRP FKVEAVKEAL AGMGIKGMTL TDVKGFGRQM GHKEIYRGAE
+UniRef90_B8DJ84/1-112 MKKIEAIIKP FKLDAVKDAL IGIGVFGLTV TEVRGYGRQR GHVETYRGLE
+UniRef90_Q6ARG9/1-112 MKKIEAIIKP FKLEEIKEAL TELAITGMTI SEVKGYGRQK GHKEMYRGAE
+UniRef90_C1W154/1-112 MKLVTAIIQP HRLDAVKSAL EAAGIRGMTV SEASGYGRQK GHTEVYRGAE
+UniRef90_C1UII8/1-112 MKLVTAIVKP FKLDDVKNAL ELIGIAGLTV SEVQGFGRQR GHTEVYRGAE
+UniRef90_UPI000/1-118 --KVTVITNQ AKFYQLKTSL EAIGITGMTV IQVLGFGIQK GQPEYYRGNP
+UniRef90_C1T022/1-113 MKLVIAYIRP ECLNAVKQEL YAKKIYNMSV TNVLGSGRQK GFTETYRGVV
+UniRef90_Q46G48/1-112 MKYIIAMIRP ERLDAVKREL QKLEVNRLTV SSVAGYGAQK GHLEIYRATE
+UniRef90_A2RJQ2/1-112 MKKIEAIIRT DKLEDLKKAL SDNGVHGMTV SQVLGYGEQK GFAEYVRGQR
+UniRef90_Q8KF33/1-112 MKKIEAIIRT SQYEAVKKAL HEIDIDFFTW WDVTGQGNDK KHTEIYRGTV
+UniRef90_B1HTS9/1-112 MKKIEVIIRP EVFGAVRDGL AQQGIAGLSV SEIAGCGRQL GRTGLFRGNT
+UniRef90_A2SPS9/1-106 MKMITAIIRP EKVDEVLNAL EQNNIPGVTI TEVLGRGEQG GVCLQYRAGK
+UniRef90_C0EAH3/1-111 --KLVIVTRQ SKFEELKAAM NAIEVTGMTV TQVIGCGTQK GATEFYRGVP
+UniRef90_A7I8Z1/1-104 --MISAIIKP ERFEFVKKAL EDKGYVSMTI TEVKGRGEQK GISLEYRGGK
+UniRef90_Q3AFZ0/1-114 MKKIEALIRP QKLGEVKEAL NKLGISGMTV TEVVGCGRQK GQKEIYRGIE
+UniRef90_A7I508/1-106 MKLVIALIRP ERFGAVKKAL EDKGYIGMTT AEAKGRGAQK GIALVYRGGR
+UniRef90_P51604/1-112 MKEIIAIIRP NKINRTKEVL DALGFSSMTA NAVFGRGRQK AIVGELREEE
+UniRef90_B0NXT3/1-112 --KINAIVRE EKFEDVKEAL NKIGVNGITV SQVMGCGAQK GFTEVIRGTK
+UniRef90_A8YG01/1-96 ---------- ------KIAL VNAGIVGMTV SEVRGFGRQK GQSERYRGSE
+UniRef90_C0BMJ9/1-112 MKKVEAIIRK SKFDDVKKAL HAIEVNFFSY WDVTGVGNEK Q-GHVYRGIS
+UniRef90_Q466Y2/1-112 MCKIEAIIKP MKLHEVKDAL EEAGYPSLTV TDVKGRGQQK GIVQQWRGKK
+UniRef90_O26760/1-112 MKEIVAIIRP EKLEEVKNAL EAAGCHGMTV TEVRGRGRQL GITESYRGRD
+UniRef90_A0LYN2/1-111 MKKIEAIIRK SEFDETKEAL HSIGVTFFSY WDVTGVGNEK V-GHVYRGVS
+UniRef90_C1YA75/1-112 MKVVTAVIKP FKLDEVRAAL LAFGVQGMTV SESSGYGRQR GHTEVYRGAE
+UniRef90_A8KX44/1-112 MKLVTAIVRP HRVDDVRAAL TTYGVHGITV SQVTGFGLEM WRTQTYRGNA
+UniRef90_C0EZB6/1-110 --KLTIMCKE DRFAILKDAM SQIGVTGMTV SHVMGCGTQK GKTGQYRGVK
+UniRef90_Q11P32/1-112 MKKIEAIVKP SKLKAIQAGL IKIGIPCMTV VPVKGVGLQQ GFPEIYRGTE
+UniRef90_A7B6Y7/1-112 --KIEAIVRE EKFEQVKSAL QDIQVNGVTI SQVMGYGTQR GYTEIVRGSE
+UniRef90_A7VSI5/1-111 --KVVILFNQ DKFIELKDAM NAIGVTGMTV IHVMGCGVQK GNTRYYRGVK
+UniRef90_A6G036/1-110 --KVEAMIRP FKLDDVKERL TELEVGGMTV TEVKGFGRTG GKTEFYRGSA
+UniRef90_C0ES36/1-115 MIKVEAYVRE DKFEDVKAAL NAIGVNGLTV SQVMGCGIQR GYKEIVRGMQ
+UniRef90_B5IHX8/1-113 MKQIQAIVRP EKLDAVKDAL VEIGINGITV TAVQGFGKQM GHTEVYRGVK
+UniRef90_B0MIE7/1-103 ---------P EKLTDVKHIL EAHKVSGLMI SNIMGYGNQK GFTQKYRGNE
+UniRef90_B4S395/1-111 MKLITAIIQE DKLDQVREAL IQANISRISV SRISGHGRQE -DIDIYRGRK
+UniRef90_P51254/1-112 MKKIEAIIRP FKLNEVKLAL VKGGIGGMTV VKVSGFGRQK GQTERYKGSE
+UniRef90_P71524/1-104 MKMIRAVVRP SKAEEVVDAL AESGCVALTK MDVIGRGKQK G----IKIDQ
+UniRef90_A8JI83/1-105 ---IEAIFRP WRLPFVIDTL SKYGIRGLTN TPVKGVGVQG GSRERYAGTE
+UniRef90_B0CD03/1-107 MRTITAFIRP QQCDQVKLVL VQLGIIDITL SDVKGFGRQQ GSLQQYRGSD
+UniRef90_B1QY06/1-112 MKRIEAIIRP SKLEEIKEAL KNNNINGVTI SQVMGCGKQL GWKEYHRGTE
+UniRef90_Q30VL0/1-106 MKLLIAYIRP EKLSTVKKAL YARGIYAMSV TNALGSGQQK GFTETYRGIV
+UniRef90_A0T2Q5/1-113 MKEVLAIIRP NMVSKTGKAL EAVGFPAMTV IRCFGRGKEK GYIDAGEKLG
+UniRef90_B3QXW9/1-112 MKEITAIIRI NKMNETKKAL IKAGISSFTA SRVLGRGKGQ VHYDLLKGAA
+UniRef90_B6YRQ4/1-111 MKKIEAIIRK TRFDEVKEAL LEADIEWFSY SDVRGVGKAR Q-ERIYRGVV
+UniRef90_B0MJN0/1-114 MTKVDIIANQ EKFEVLKHAL SSIGITGMTV SHVMGCGMQK GSTEFYRGVP
+UniRef90_C2C1T3/1-112 --KIEIITRP NRFDVFQKAL KEIGVSGLTV TKAVGTGLEK GMIELYRGTI
+UniRef90_C1VTA2/1-110 --LVMAIVRP EKLSDVKAAL AEAGAPSLTV TQVSGRGSQP AKTGQWRGEE
+UniRef90_A3XNG5/1-112 MKKIEAIIRK SKFTAVKKAL HDKGVNFFSY WDVTGLGNEK E-GHVYRGVS
+UniRef90_P71525/1-111 MKEIIAIIRP SKMAQTKTVL EGLGFPAMTA NRVLGRGKQK AIVGELGFEV
+UniRef90_Q46C91/1-112 MKEIIAIIRP KKVVPTKEAL EKLGVPSLTA IPVFGRGKQK GIATELDIAG
+UniRef90_B7BWA8/1-112 MKEVMIILRP KMYFPTKDAL DQAGFHSMTI REIIGRGKCP VHYDYDEGAP
+UniRef90_Q7UGU6/1-112 MKLIIAIVQP SKLDAIKEAL TRVEVHRLTV VDCQGFGRQR GQTGSMRGRD
+UniRef90_A3HVG6/1-112 MKKIEAIIRT SRFEQIHSCV AGLGVKFLTF YEVKGMGLEH AKQQTYRGVA
+UniRef90_A0YMH7/1-112 MKRIEALIRP VQFDSVVTAL VEAGIVGMSV TNVRGYGRQK GQTESYRGVK
+UniRef90_Q46A23/1-112 MKYIIAMIRP EKLDSVKKEI QKIGAHGLTV SSISGYGAQG GHLNVDRTKK
+UniRef90_B4VJP7/1-90 ---------- ------MKAL LDAGYPAVTK VDVFGRGKQR G----LKIGN
+UniRef90_B1QUW3/1-103 MYLVRAIIRT EKVNGVLSEL VDAGFPQVTK MDVFGRGKQK G----IQVGE
+UniRef90_A5N1U1/1-112 MKEIMAVIRM NMVGKTKKAL AENGFPSITC KDVLGRGKKM VEEELHRIED
+UniRef90_A9D1T1/1-65 ---------- ---------- ---------- ---------- -------GAE
+UniRef90_A6LUZ0/1-104 MYMIRAIIRP ERVSTVLSEL LDAGFPEVTK MAVYGRGKQK G----IKVGE
+UniRef90_A6LUZ1/1-112 MKEVMCIIRL NKVNKTKEAL AEAGFPSITC RKVLGRGKKS ALVEAYMETG
+UniRef90_B8GEW5/1-112 MKEIMAIVRM KKTGVTKRAL VETGVAGFTA LKVLGRGKLV EDTAVIEPAE
+UniRef90_C1FI34/1-109 --QVRAMVRP WRLSGVIDAL NKYGIRGLTT YTVHGAGVQI GTVERYAGST
+UniRef90_C1TA34/1-112 MKEIIAIIRM NKVNITKKAL ADVGVCGLHA IKVMGRGKQL GVREEIDGLS
+UniRef90_C1T440/1-112 MKEVIAVIRM NMMNKTKKAL QDAGVVAFFA HEAFGRGKGL VDVKPLEGAR
+UniRef90_A9A2H4/1-100 MKKVEAIVNE SAQNAVIDAM RKVGISGVTV SKVQGQGAQD --------PP
+UniRef90_Q97ME3/1-112 MKEIMAIIRM NMVEKTKEAL LKGGNPAITC LKVLGRGRQK VDIEDYKMAE
+
+
+ 51 100
+QUERY/1-116 YTVEFLQKLK LEIVVEDAQV DTVIDKIVAA ARTGENGDGK IFVSPVDQTI
+UniRef90_C0EK60/1-112 YAVDFLPKVK IELVLADDKV DQAVDAILET AHSGKIGDGK IFIYPVEEAI
+UniRef90_Q21P81/1-112 YVIDFLPKVK LELVLGDELI DQAVEAISKA AQTGKIGDGK IFITPCEEVI
+UniRef90_Q47GI8/1-112 YVVDFLPKIK IEIVVNSNNV EPAIDAIIKA ARTGKIGDGK IFVMPVEQVV
+UniRef90_B9ZJ79/1-112 YVVDFLPKVK LELVVDDDRV DACIDAIVKA SRTGKIGDGK IFVSDMARVV
+UniRef90_B5FAN6/1-112 YQVDFLPKVK LEIAVQAEGV DRIVEAISKA AHTGKIGDGK IFVYDLQQAV
+UniRef90_B5ZIL8/1-112 YIVDFLPKVK LEIVCADNLV DRAVETIMAA ARTGRIGDGK IFILPVEDVI
+UniRef90_B4RVM6/1-112 YQVDFLPKIK IELVLDDDRV EQAVEAIQSS AKTGKIGDGK IFVYSVESAV
+UniRef90_B2FHB8/1-112 YVVDFLPKIK IETVVTDERA DAVIEAIQSS AGTGKIGDGK IFVTAVEQVI
+UniRef90_P21193/1-112 YVVDFLPKVK IEVVMEDSLV ERAIEAIQQA AHTGRIGDGK IFVTPVEEVV
+UniRef90_B5JS45/1-112 YVVDFLPKLK LEIVVAEKDA DACVESITNA AKTGQIGDGK IFVSDVERTI
+UniRef90_Q07UM0/1-112 YLVNFLPKLR IEVGVADTLV DKAVEAITRS ARTGQIGDGK IFVTPLDHAL
+UniRef90_Q2RVB4/1-112 YVVNFLPKVK IELAVPDNLL DQVVETIQST AQTGKIGDGK IFVFDLGEAV
+UniRef90_A9IPV3/1-112 YAVDFLPKLR VEAAVPDHLV DQVIDVIEQA ARTGKIGDGK IFTAPLEQVI
+UniRef90_A4TZT2/1-112 YVVSFVPKIK IELVVNDDVV DRAVEAIQAA ARTDKIGDGK IFVMDVAHAL
+UniRef90_B3DVA4/1-110 YTVDFLPKVK VEIVLTEDIL PKAVEAIIKS AKTGKIGDGK IFVLPVSEAI
+UniRef90_C1STD4/1-112 YQVDFVAKVK IEIVVDDGLV EEIVSTVQEG ARTGKVGDGK IFISPVDNAV
+UniRef90_A7HGG9/1-112 YVIDLIPKLK LEIVLPDPLV DRVVADLESW LRTGRIGDGK IFVEPLDDAV
+UniRef90_A9BCF1/1-112 FTVEFLQKLK IEIVVADESV PTVLTAIAEA AKTGEIGDGK IFISPVESVV
+UniRef90_B4U911/1-112 YVIDFLPKIK IETVVKDSEV EKVVQTILKS AQTGKVGDGK IFIYNVEETV
+UniRef90_B1ZSX2/1-112 YTVDFLPKVR IEILAADESV PKILETIIST AKTGKIGDGK IFISAAEDVV
+UniRef90_Q7X1L4/1-112 YVVEFITKIK VEIVVADAKV SPVLEAIRRT AMSNSIGDGK VFVSPVETAL
+UniRef90_Q1NW36/1-112 YVVDFVAKIK VEIVVESEKA SLLVETITQA ARNGNIGDGK IFVTPVESVC
+UniRef90_C0GRX0/1-112 YDVDFLPKVK IEVILDDANV DQAVEAAIKA ARTDKVGDGK IFVYSVENAI
+UniRef90_B8DJ84/1-112 YEVQFNSKLK IETVVPDGMS DQVVKAITTA ARTGSIGDGK IFISSLEEVI
+UniRef90_Q6ARG9/1-112 YSIDFNPKLK IELVVRAEIA DKVVEKIRLA ARTGKIGDGK IFVLPIEEVV
+UniRef90_C1W154/1-112 YTIDLVPKIR LEILVDDPDA HRVGEVITQA AHTGRIGDGK VWTIPVDSVT
+UniRef90_C1UII8/1-112 YQVDFVPKVR IEVVVGEIEA ARVVDAIVEA ASTGQIGDGK VWVTTIDEIV
+UniRef90_UPI000/1-118 IEATLLPKVK MKKIEAIIRP EAFQTLKDGL SAVGISGLTV TEAAGCGKQQ
+UniRef90_C1T022/1-113 MEVNLLKKLR LEIGVNDDFA EQAVEAINAG ARTGKEGDGV IFVLECAAAV
+UniRef90_Q46G48/1-112 HEANLLEKVK IEIAVEDHFL KSVIEAIKTG AKDGYIGSGK IFVLPLENVI
+UniRef90_A2RJQ2/1-112 IETTLLSKIK IEIVSIDEKV DQIVNVITKA VRTGEVGDGK IFIQPVERVI
+UniRef90_Q8KF33/1-112 RDTSYISRRY LSIVVRDVNL QKTVDCLIKN ARTGEVGDGK IFVSDIEQSY
+UniRef90_B1HTS9/1-112 YEIEFLPKLK LEMIVDDSKV DGIVEILLRE AATGKVGDGK IFIYPVEQAI
+UniRef90_A2SPS9/1-106 MQVKTLPKTK LEIVVPDKDV DTLIKVIREH ARTGKKGDGR IFVLPVEAAA
+UniRef90_C0EAH3/1-111 VEMNLLPKIK VEIVVCRVPV RTVIETAKKV LYTGHYGDGK IFVYDIENVV
+UniRef90_A7I8Z1/1-104 MTVDLLPKVK IEIVIRDKDL EDVIATLTGA ARTGKIGDGK IFVIPVEKSI
+UniRef90_Q3AFZ0/1-114 YEINLLPKVK IEIVTVDEKV EEIIKIISES ARTGAIGDGK IFISEVLDAV
+UniRef90_A7I508/1-106 LTIDILVKVR IEIVSHDRDV EDLVSTIRES AWTGANGDGR IFVLPVEQAI
+UniRef90_P51604/1-112 GSMRYIPKRM ISLVVPDEDA SLVVESIMKV NKTGQIGDGK IFVCPIEDAV
+UniRef90_B0NXT3/1-112 VDMMMRPKIK FEIVVSSEEW ERTIEAIQKS AFTGEVGDGK IFSYEVRNVV
+UniRef90_A8YG01/1-96 YTVEFLQKLK IEIVVEDKQV DMVVDKLISA ARTGEIGDGK IFISPVEQIV
+UniRef90_C0BMJ9/1-112 YSTSDIQRRI LSIVISDEFL EPTINAILEA ACTGNVGDGK IFVSDVQDAY
+UniRef90_Q466Y2/1-112 YCVDLLPKTK IEIAAPEDKI EEIIKIIQSS AYTGEIGDGK IFVTPIETVV
+UniRef90_O26760/1-112 YRIDLLPKTK IEIVVNDEDV DTVVETIVKS AQTGDIGDGK IFISGVDEVV
+UniRef90_A0LYN2/1-111 YSTADIQRRY LSIVVTDSFV EKTVETLLKA AHTGKVGDGK IFILPVEEAY
+UniRef90_C1YA75/1-112 YTVELLPKVR VEILVDDEDA EDVVDVIVRA ARTGKIGDGK VWTQPVETVI
+UniRef90_A8KX44/1-112 FHDESTSNIR LELVVADSDA PDVVNVIRRT AASTSSGAGK IWVLPVEGLA
+UniRef90_C0EZB6/1-110 IDMNLLPQLQ VDIVVSTVPP ELVVEAAKKA LYTGEYGDGK IFLYDVENVV
+UniRef90_Q11P32/1-112 KSIVLLSKVM IICVVSDENL EKCIDVIIET GSEGKVGDGK IFVYDVLDAI
+UniRef90_A7B6Y7/1-112 VDILLHPKIK FEVVVSSEEW EQTISAIQKA AFTGEVGDGK IFSYEIRSAV
+UniRef90_A7VSI5/1-111 LDIVLLPKIK LEIVVSKVPV QTV-DTARKV LYTGNIGDGK IFIYDVENVI
+UniRef90_A6G036/1-110 YVIDFVPKIK IEVVVPAARS EEVIAAIREV AASDRIGDGK IFVTPVLEAV
+UniRef90_C0ES36/1-115 VDMQMQPKIK FEIVVSSEEW EKTIEAIEKA AYTGEPGDGK IFTYEIRHAQ
+UniRef90_B5IHX8/1-113 VEAKLLTKMQ ITSVVTDQAV DQVVQAILTA ARTGEIGDGK IVITPVENAI
+UniRef90_B0MIE7/1-103 LNSNLLPKIK VESVMPEEVV EKVTKDIVNT VRTGEFGDGK IFISPVEEAI
+UniRef90_B4S395/1-111 IAPNLRPKIK LEIAVNEEFV DVAIDTIVDS ARSGEIGDGK IFVTPLEQCV
+UniRef90_P51254/1-112 YSIDIIDKIK IEIIVSDDKV NSITEIIIKT AKTGEIGDGK IFISDVEQVI
+UniRef90_P71524/1-104 IYYDELPKTM LMLVVEDDAA ENVIELITKT AYTGSFGDGK IFVSPVDEAY
+UniRef90_A8JI83/1-105 FGPNLVDKEK LDIVVSRAQV DAVVRLVAAS AYTGEIGDGK IFVHPVAEVV
+UniRef90_B0CD03/1-107 AEIRLHRKLK VEVKVDEEMV APVVEKITFA ARTGQVGDGK IFVSPLQKVV
+UniRef90_B1QY06/1-112 LITNVLPKIE VKMVIEDSKV EEVIEIISSI AKTGEVGDGK IFVIDICDCV
+UniRef90_Q30VL0/1-106 TEVNLLKKVR IEVGVPADKA EDALAALQTG AHTGREGDGI IFVQDVARTV
+UniRef90_A0T2Q5/1-113 MRMKYIPKRM ISIVVDDADV PFVVGIIMKV NRTGKPGDGK IFVLPVEEAI
+UniRef90_B3QXW9/1-112 EGYELVSKRY LVVVVNDNML QPTIDAIISA NQTGKPGDGK IFVSTIEDAV
+UniRef90_B6YRQ4/1-111 YDTSSIERIQ INLVVRDINV EKAIKAIEKS AHTGEVGDGR IFVSTIDNAY
+UniRef90_B0MJN0/1-114 VDARLLPKMK VEIVVCKVPV EKVVEVAKNA LYTGKIGDGK IFVYDVENVI
+UniRef90_C2C1T3/1-112 KENNVHERMK VEIVVSTVPV EAVLEVVKNT LRTGEPGDGK VFVYPLSDVI
+UniRef90_C1VTA2/1-110 YVIDLHQKIK VECVVEPEDA DDVVEAIREG ANTGEKGDGK IFVLPVFDAV
+UniRef90_A3XNG5/1-112 YSTSDIQRRY LSIVVNDDFE QAAVAAILDA AATGEVGDGK IFVSDVQDAY
+UniRef90_P71525/1-111 -DMRYIPKTM LTLIVPDEDA SLVVEAIMKV NKSGQYGDGK IFVCPIEDII
+UniRef90_Q46C91/1-112 RRMEYIPKRL FSIVTRNEDV DTIIETIMKV NQTGDIGDGR IFICPVDDAI
+UniRef90_B7BWA8/1-112 VKHRLVAKRM IDMFVRDEDL QKLIDTVVEV NKTNHAGDGK IFVLPVNDAI
+UniRef90_Q7UGU6/1-112 YGVSLLRKVQ LQIGVNEEFV QPTIDAIGRS GESGEIGDGK IFVLPMDDCV
+UniRef90_A3HVG6/1-112 YEPTYIPRTK LEIVTVDELV EPVINCILTE GKTGEVGDGK IFVYDVLEAH
+UniRef90_A0YMH7/1-112 HVIEFHPKMK LEIVVEDEVC EFVVEKLVEA AQTGQIGDGK IFIQSMEHII
+UniRef90_Q46A23/1-112 YEANLLDKVK IEIAVKDEFL QTTVEAIERG SKDGYIGSGK IFVLPLENVM
+UniRef90_B4VJP7/1-90 VLYDELPKAL LMVVVPDTEK EFVIRAILSS ARTGAEGDGK IFVSPVEEVY
+UniRef90_B1QUW3/1-103 VHYDELPKEM LLIVVKDEDK DDVVRVIMKN SRTGEYGDGK IFISKVDTAY
+UniRef90_A5N1U1/1-112 ESYRLISKRL IWILAKDEDV KKIADIIIDI NQTGHPGDGK IFVTKVTDVV
+UniRef90_A9D1T1/1-65 YMVDFLPKVK IELVIQDELL DRAIEVIVDT ARTGKIGDGK IFVTEIERVI
+UniRef90_A6LUZ0/1-104 VYYDELPKEM LLIAVKDEDK DDVIKVIIRN SRTGEFGDGK IFVAPIEEVY
+UniRef90_A6LUZ1/1-112 EVPRLIPKRF ITLVVKDDEV KTVVDTVISV NSTGTPGDGK IFVLPVEEVY
+UniRef90_B8GEW5/1-112 QEVRFFPRRL FTILAHDEDV PRIVEAITKV NITEKVGDGI ILVLPVDDAV
+UniRef90_C1FI34/1-109 FDANLVEKVV VEIVVVREQC QEVVDVIVDA AQTGEIGDGK IFLSPVHDIV
+UniRef90_C1TA34/1-112 GGTRLIPKRL LTILARDEDV KKIVDTVIKV NQEGNKGDGR IFIAPVIDAY
+UniRef90_C1T440/1-112 KGIELYPKRM LTVVVTDDLV PEVVKVITDT NKTGQPGDGK IFVLPMIDAV
+UniRef90_A9A2H4/1-100 LVGDFFSRVL IVCVVDDPKL DEILDAIAGA ACTGTKGDGK VYVSDICDAL
+UniRef90_Q97ME3/1-112 ELSELISKRL IIILAKDEDV KEIVDEIIEV NRTGNPGDGK IFVINIADAM
+
+
+ 101 150
+QUERY/1-116 RIRTGEKNAD AISAWS
+UniRef90_C0EK60/1-112 RIRTGERSEA AL----
+UniRef90_Q21P81/1-112 RIRTGETGPE AV----
+UniRef90_Q47GI8/1-112 RIRTGETDEA AV----
+UniRef90_B9ZJ79/1-112 RIRTGEEGSE AL----
+UniRef90_B5FAN6/1-112 RIRTGETDTE AL----
+UniRef90_B5ZIL8/1-112 RIRTGEHGEE AI----
+UniRef90_B4RVM6/1-112 RIRTGEQNED AI----
+UniRef90_B2FHB8/1-112 RIRTGEIGAD AL----
+UniRef90_P21193/1-112 RIRTGEKGGD AI----
+UniRef90_B5JS45/1-112 RIRTGEEDES AI----
+UniRef90_Q07UM0/1-112 RIRTGETNAD AL----
+UniRef90_Q2RVB4/1-112 RIRTGERGEE AL----
+UniRef90_A9IPV3/1-112 RIRTGESGEA AL----
+UniRef90_A4TZT2/1-112 RIRTGEADTE AL----
+UniRef90_B3DVA4/1-110 RIRTEEKGEN AI----
+UniRef90_C1STD4/1-112 RIRTGESGAE AL----
+UniRef90_A7HGG9/1-112 RVRTGERGED AL----
+UniRef90_A9BCF1/1-112 RIRTGELDGS AL----
+UniRef90_B4U911/1-112 RIRTGERGES AI----
+UniRef90_B1ZSX2/1-112 RIRTDERGEA AL----
+UniRef90_Q7X1L4/1-112 RIRTGETGDA AL----
+UniRef90_Q1NW36/1-112 RIRTGELDQD AI----
+UniRef90_C0GRX0/1-112 RIRTGESGDE AI----
+UniRef90_B8DJ84/1-112 RIRTGEEGTD AI----
+UniRef90_Q6ARG9/1-112 RVRTGEQGRE AI----
+UniRef90_C1W154/1-112 RVRTGEEGPS AL----
+UniRef90_C1UII8/1-112 RVRTGERGAD AL----
+UniRef90_UPI000/1-118 GKKGVFRGTS FEIQLV
+UniRef90_C1T022/1-113 RIRTQETGPA AMG---
+UniRef90_Q46G48/1-112 RIRTNETGPE AL----
+UniRef90_A2RJQ2/1-112 RIRTSEEDAQ AL----
+UniRef90_Q8KF33/1-112 RIRTGESGDE SL----
+UniRef90_B1HTS9/1-112 RIRTKEVGSI AV----
+UniRef90_A2SPS9/1-106 WVRTDE---- ------
+UniRef90_C0EAH3/1-111 KVRTGEEGCA ALQ---
+UniRef90_A7I8Z1/1-104 RIRTGD---- ------
+UniRef90_Q3AFZ0/1-114 RIRTGERGTA AITS--
+UniRef90_A7I508/1-106 RIRTGE---- ------
+UniRef90_P51604/1-112 RVRTKESGED AI----
+UniRef90_B0NXT3/1-112 KIRTGERDVD ALQD--
+UniRef90_A8YG01/1-96 RIRTGEKDLQ AI----
+UniRef90_C0BMJ9/1-112 RIRTRENGKA GIN---
+UniRef90_Q466Y2/1-112 RIRTGERNGD AL----
+UniRef90_O26760/1-112 RIRTGESGKK AV----
+UniRef90_A0LYN2/1-111 RIRTKEKGGE SL----
+UniRef90_C1YA75/1-112 RVRTGERGPE AL----
+UniRef90_A8KX44/1-112 RIRTGERGAD AL----
+UniRef90_C0EZB6/1-110 RIRTNETGIA AL----
+UniRef90_Q11P32/1-112 RMRTRTRGDD AI----
+UniRef90_A7B6Y7/1-112 KIRTKETGYN AVQS--
+UniRef90_A7VSI5/1-111 KVRTGAEGYY ALQD--
+UniRef90_A6G036/1-110 RIRTDERGES AL----
+UniRef90_C0ES36/1-115 KIRTKETGYD AIQAT-
+UniRef90_B5IHX8/1-113 RIRTGESGDS TLA---
+UniRef90_B0MIE7/1-103 RIRTGETGKD AL----
+UniRef90_B4S395/1-111 RIRTNERGGS AI----
+UniRef90_P51254/1-112 RIRTNDLNSA AL----
+UniRef90_P71524/1-104 TVRTRSCG-- ------
+UniRef90_A8JI83/1-105 RIRTAETG-- ------
+UniRef90_B0CD03/1-107 QVRTGEE--- ------
+UniRef90_B1QY06/1-112 RIRTGERGNE AL----
+UniRef90_Q30VL0/1-106 RVRTGE---- ------
+UniRef90_A0T2Q5/1-113 RIRTGEFGVE AIG---
+UniRef90_B3QXW9/1-112 RVRTGETGSA IL----
+UniRef90_B6YRQ4/1-111 SIRTGEQGDE TL----
+UniRef90_B0MJN0/1-114 KVRTGEEAYE ALQD--
+UniRef90_C2C1T3/1-112 KISTGEHGVA ALQD--
+UniRef90_C1VTA2/1-110 QVRTGDRGTD AI----
+UniRef90_A3XNG5/1-112 RIRTGKKGPD TLN---
+UniRef90_P71525/1-111 TVRTSERGEA AI----
+UniRef90_Q46C91/1-112 RVRTDEHGDN AL----
+UniRef90_B7BWA8/1-112 RVRTGEKGIE AI----
+UniRef90_Q7UGU6/1-112 RIRTGERGGE AI----
+UniRef90_A3HVG6/1-112 RIRNNDQGEQ AL----
+UniRef90_A0YMH7/1-112 RTRTGESDLE AL----
+UniRef90_Q46A23/1-112 RIRTKETGND AL----
+UniRef90_B4VJP7/1-90 TISSGKTDSS ------
+UniRef90_B1QUW3/1-103 TISTGKE--- ------
+UniRef90_A5N1U1/1-112 RIRTGETQDE AV----
+UniRef90_A9D1T1/1-65 RIRTGEENEE AV----
+UniRef90_A6LUZ0/1-104 TVSSGKSG-- ------
+UniRef90_A6LUZ1/1-112 RVRDGQIGEE AI----
+UniRef90_B8GEW5/1-112 RVRTGESGDA AI----
+UniRef90_C1FI34/1-109 RIRTGEVGAA A-----
+UniRef90_C1TA34/1-112 RVRTAEKGEA AV----
+UniRef90_C1T440/1-112 RVRTGEKGAK SI----
+UniRef90_A9A2H4/1-100 DICTKKRG-- ------
+UniRef90_Q97ME3/1-112 RIRTEETGDM AI----
+
+
--- /dev/null
+>d1b3aa_ d.9.1.1 (A:) RANTES (regulated upon activation, normal T-cell expressed and secreted) {Human (Homo sapiens) [TaxId: 9606]}
+PYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
+++ /dev/null
->QUERY
-SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDA
-YVPERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQL
-HRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLES
-WRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASG
-YFMVLIRAKLDSYSSFTTSPSEAVMREHAYSRAPTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL
->UniRef90_Q00028
------PPKATSPTALYQRLQAELGFPEGQAMLFAMEKWNEDMFSAIPVHVDLYTEIALLSTSVNEVVKAGLD
-SLPIPTEVDLNAHGSEPFPEVPALEDELETYVISAQRFYLSELRAREEHYSRLLRGYCVALLHYLYGSAKRQ
-LRGA---GSDSALMHKFKQVVRDRYYRETANLARLLYLHLYISVTREVSWRLHASQVVNQGIFVSLHYTWPQ
-RRKFECLFHPVLFNHGVVILENDPLEFNDLQRINYRRRELGLPLIRAGLIEEENLPLESEPTFSGKLPRTIG
-FLTHQIRTKMEAYSNAHPSTPLFPLAEHSYSRIDGRLSYGTTAEAMMDPPSPSA--------------
->UniRef90_Q8B635
------PIKASSPSSLIKNLLDELNFPEGPSLLSSMEKWNEDLFSCIPRFLEIYIENSILSTSVDEVIKNLDN
-SLNYDDVIDFQVHGPETFPKTPLLEEELENYVTSVQKYFLSELKAREVTYSFLLTKYCKALLLYLRYNTKSS
-IKG------NKDINQKFKQNVRERYYREVANIARLLYLHLYLSVTREVSWKLHADQVLLQSVFVSLSYSWSH
-RRQFECIFHPILFNHGIVNLENNPLTFKELQKINYRRHILGLPLIRAGLVEEDNQPLMIPPEFSSKLPRTIG
-FLTQQIRAKMEAYSDNHPVTPKFPRIEHSYAKPIDPINYGTTIEAMMDPPSPSA--------------
->UniRef90_Q9E205
------PPRVASPAVLYQQLINDLHFSEGPRIIALLETCNEDIFSCFPLNEDLYTDTIVFSTNPSDIIELETS
-ETPE--PINLITKG-CDLPSLPSTYTELPMYVENVQNTFFTELRVREKAYLRLLILYCKSLLRHLQGISRRS
-SVGARSQDCEHKYITQFKQSIRLRYYREVAKLARLLYLHLYITVTRQFSWRLFAQQSKYPDVFAAMKFMWLE
-NRQFTCAFHPILCNHGIVLLEGKPLSSQRLREVNYRRRQLGLPLVRCALIEEKGVPLVQRPEFSAHMPRSLG
-FLTHHIKAKLDVYSSKHSQEPGNVRVDHPYARNVNNINYGSSVEAMIVSPPSPS--------------
->UniRef90_Q88530
---LPSPE-AASPNLLYDRLILELDFAEGPSLLAKLERVNVDLFSCLPLNSHLYKHAKILSTCPREVLDAVYE
-NTWQYTALNLNEHGKSSIPPVPASKDDLPAYVTAVQEFYLEELEAREQIYAKLFFGYCRALIMHIIKSV--L
-NESRGVRVSDDYVQNKARWYISNNYYRDAVRIAKLLYLHLYLSTTEIVSQRLEAMQTSLQDLFVYLRCEWGQ
-GRQFWCIFQPMIYNHGVPMIEGRALTSLELGSSNYIRSELGLPLIRCELLEELESPVVFPPTFTATAPRSSG
-YLFHNIRAKMELYSNIHPSPQLSGLSDHTYVRTHVPVNYGTTVEVLLDASDPDS--------------
->UniRef90_B4XS08
-------------------------FPEASTILSTFELMNMDLFSCLPRNEDLYRNAALLSGSVTEVIEA--S
-EIPIDGEIDLNAHGSKQLPIPPSNEWEIPNYVEAVQQFFLSELRAREESYLKLFLGYCRAIVNYIKSAATRG
-VRGCRIMDRKSEANKRMRRMIADRYYREAARLAKVLYLHLYLSVAREISSRLCATQMQVQNVFVYMRYEWQQ
-YRQFTCLFHPIMFNHGVVLLNGEPLQAQKLREVNYIRFKLGLPVIRCGLVEEHDKPLVEEPRFYGNLPRSSG
-FLTELIRSKMEAYSELRPTSPSSISNDHTYAKQLDKVNFGSTREAILDTIDTEGP-------------
->UniRef90_P09265
----PSPPWVASPKILYQQLIRDLDFSEGPRLLSCLETWNEDLFSCFPINEDLYSDMMVLSPDPDDVI----S
-TVSTKDHVNLTTRGSVRLPSPPKQPTGLPAYVQEVQDSFTVELRAREEAYTKLLVTYCKSIIRYLQGTAKRT
-TIGLNIQNPDQKAYTQLRQSILLRYYREVASLARLLYLHLYLTVTREFSWRLYASQSAHPDVFAALKFTWTE
-RRQFTCAFHPVLCNHGIVLLEGKPLTASALREINYRRRELGLPLVRCGLVEENKSPLVQQPSFSVHLPRSVG
-FLTHHIKRKLDAYAVKHPQEPRHVRADHPYAKVVENRNYGSSIEAMILAP--PSPSE-----------
->UniRef90_Q2QBC8
-------------AALYNRLLEDLGFGDGPALCTILDSWNEDLFSGLPANPDLYRECRFLSTLPGDVVVWGDA
-HAPDRGPIDIRAHGSAPFPSLPARREGLPAYCEALTRFFHSELRAREESYRRVLANFCSALYRYLRASTRQL
-HRQAALKGRPRDLQEMLRAAVAERYYRETARLARVLFLHLYLFLVREILWAVYAEQVMRQDLFEGLRCDLEQ
-ARQLSCLFQPLLFVHGALSVGGEPVSPARLRELNHVRERLNLPLIRSAATEEPGAALTAAPALQTQRARSSG
-YFMTLIRVKLDAYSEWSAGSEGAVLREHAYSRRRERTNYGSSIEGLLEL-------------------
->UniRef90_Q90603
----------------YTRLLHELDFVEGPSILARLEKINVDLFSCFPHNKHLYEHAKILSVSPSEVLEELSK
-NTWTYTALNLNEHGEVALPMPPTTKADLPSYVDDIQNFYLGELEAREKSYATMFYGYCRALAEYIRQSAIKD
-LRDA--RVEDKNIGACSKARQYIAERYYREAFANVLYVHLYLSTTRDVSQRLEASQMGRQNIFVYLKCEWLQ
-ERHFHCLFQPVIFNHGVVIVEGRVLTAPELRAQNYIRSEFGLPLIRCKLVEEPDMPLISPPPFSGDAPRASV
-YLLQCIRSKLEVYSSHPPNPQLHVHKEHVHQKLESPPNYGTTVEALLMDSSD----------------
->UniRef90_O89246
---------------------HELDFTEGPSLLSRLEKLNVDLFSCFPINGHLYEHATLLSVSPSEVLDAASE
-EKWAYTAINLNEHCGMEVPRPPLTKDGLPVYVTEIQKFFSMELEAREKSYVTLLCGYCRALACYLRQGANEP
-SRCDMCVGGS----ETPRRSIAGAYYREAARFARLLYMHLYLSVTRDVSRRLEASQRKRQNLFAHLRCDWHQ
-LRHFQCLFQPVIFNHGVVIVEGRALTAAELRTQNYVRSELGLPVMRCELVEERGMPLTAPPAFLANAPRASA
-YLFQCIKSKLEVYSLMHPPRPRSSARGESGRAGKAGPSHGTIVKAMLRDSTHPGPAIADIAAAR----
->UniRef90_Q5PP87
-----------SPDALYQRLISDLAFDEGPALLGAMERWNEDLFSCLPGNEDLYARLVMLSASADEVAAQVRA
-PTADAS-VDLGVPGAEPMPRVPAVEEELPAYVAAVERFFVSTLRAREERYARLLDAYCRAVLRYLHAQARRD
--------------EGKLRQLVRGRYYRDVARLAPWLFLHLYVATARELSWRLHADQVVAQDVFMSLRYEWDQ
-ARQLTCLFHPVLFNHGVVLLSGAPVPAAQLRAVNHRRRELGLPLVRAGLIEEDGADLVEEPPFSAALPRAAG
-YLSHQVRIKMEAYS--------REYRDHTYCRPPSPVSYG----------------------------
->UniRef90_Q65819
-----------------ERMQAELGFPDGPALLRAMERWNEDLFSCLPTNADLYADAALLSADADAVVGAMYL
-AVPDAERLDLNAHANQPLPAPPASEEGLPEYVAGVQAHFLAELRAREERYAGLFLGYCRALLQHLRA----T
-AARGRGAAGAGAQADRLRQLVAARYYREASRLARLAFAHMYVATAREVSWRLHSQQSQAQGVFVSLYYAWPQ
-RRQFTCLFHPVLFNHGVVALEDGFLDAAELRRLNYRRRELGLPLVRAGLVEVEVGPLVEEPPFSGSLPRALG
-FLNYQVRAKMGAPAE--AGGRLAPEREHSYARPRGAINYGTTPEAMLRPPSPS---------------
->UniRef90_O56869
--RNPGPPALVSASFLAKNALTELQFADWDKIQHVLKTINIDIFSCVPVGENGLCNMDWFSLDTEKIWTLMDS
-GTPNVSPNLLITPGPP--PECIKTPEEAPAYFEAISNYFESVLAAREAEYAKLLAEYAKSLAKYIRHKSQKV
-GR--GLRALELDTEEAKKRLMKSEYYKGIEKLLIIFLVHLVLNACRDVARIIWVQQRDSSSVLQKVTYRWES
--QQLHCIFQPLLVSPGPVFLDNDPLPLQTLQHVNYVRYLLGVPVLRFSMIEESPSAQYIP----YDKTAPSA
-YDVLATIAR----TCLTSSGCSRASHDHTYARDNEKPNYSSSRIVLLADSALDTP-------------
+++ /dev/null
-align1;QUERY:S,R,M,P,S,P,P,M,P,V,P,P,A,A,L,F,N,R,L,L,D,D,L,G,F,S,A,G,P,A,L,C,T,M,L,D,T,W,N,E,D,L,F,S,A,L,P,T,N,A,D,L,Y,R,E,C,K,F,L,S,T,L,P,S,D,V,V,E,W,G,D,A,Y,V,P,E,R,T,Q,I,D,I,R,A,H,G,D,V,A,F,P,T,L,P,A,T,R,D,G,L,G,L,Y,Y,E,A,L,S,R,F,F,H,A,E,L,R,A,R,E,E,S,Y,R,T,V,L,A,N,F,C,S,A,L,Y,R,Y,L,R,A,S,V,R,Q,L,H,R,Q,A,H,M,R,G,R,D,R,D,L,G,E,M,L,R,A,T,I,A,D,R,Y,Y,R,E,T,A,R,L,A,R,V,L,F,L,H,L,Y,L,F,L,T,R,E,I,L,W,A,A,Y,A,E,Q,M,M,R,P,D,L,F,D,C,L,C,C,D,L,E,S,W,R,Q,L,A,G,L,F,Q,P,F,M,F,V,N,G,A,L,T,V,R,G,V,P,I,E,A,R,R,L,R,E,L,N,H,I,R,E,H,L,N,L,P,L,V,R,S,A,A,T,E,E,P,G,A,P,L,T,T,P,P,T,L,H,G,N,Q,A,R,A,S,G,Y,F,M,V,L,I,R,A,K,L,D,S,Y,S,S,F,T,T,S,P,S,E,A,V,M,R,E,H,A,Y,S,R,A,P,T,K,N,N,Y,G,S,T,I,E,G,L,L,D,L,P,D,D,D,A,P,E,E,A,G,L,A,A,P,R,L,S,F,L,
-align2;UniRef90_Q00028:-,-,-,-,-,P,P,K,A,T,S,P,T,A,L,Y,Q,R,L,Q,A,E,L,G,F,P,E,G,Q,A,M,L,F,A,M,E,K,W,N,E,D,M,F,S,A,I,P,V,H,V,D,L,Y,T,E,I,A,L,L,S,T,S,V,N,E,V,V,K,A,G,L,D,S,L,P,I,P,T,E,V,D,L,N,A,H,G,S,E,P,F,P,E,V,P,A,L,E,D,E,L,E,T,Y,V,I,S,A,Q,R,F,Y,L,S,E,L,R,A,R,E,E,H,Y,S,R,L,L,R,G,Y,C,V,A,L,L,H,Y,L,Y,G,S,A,K,R,Q,L,R,G,A,-,-,-,G,S,D,S,A,L,M,H,K,F,K,Q,V,V,R,D,R,Y,Y,R,E,T,A,N,L,A,R,L,L,Y,L,H,L,Y,I,S,V,T,R,E,V,S,W,R,L,H,A,S,Q,V,V,N,Q,G,I,F,V,S,L,H,Y,T,W,P,Q,R,R,K,F,E,C,L,F,H,P,V,L,F,N,H,G,V,V,I,L,E,N,D,P,L,E,F,N,D,L,Q,R,I,N,Y,R,R,R,E,L,G,L,P,L,I,R,A,G,L,I,E,E,E,N,L,P,L,E,S,E,P,T,F,S,G,K,L,P,R,T,I,G,F,L,T,H,Q,I,R,T,K,M,E,A,Y,S,N,A,H,P,S,T,P,L,F,P,L,A,E,H,S,Y,S,R,I,D,G,R,L,S,Y,G,T,T,A,E,A,M,M,D,P,P,S,P,S,A,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align3;UniRef90_Q8B635:-,-,-,-,-,P,I,K,A,S,S,P,S,S,L,I,K,N,L,L,D,E,L,N,F,P,E,G,P,S,L,L,S,S,M,E,K,W,N,E,D,L,F,S,C,I,P,R,F,L,E,I,Y,I,E,N,S,I,L,S,T,S,V,D,E,V,I,K,N,L,D,N,S,L,N,Y,D,D,V,I,D,F,Q,V,H,G,P,E,T,F,P,K,T,P,L,L,E,E,E,L,E,N,Y,V,T,S,V,Q,K,Y,F,L,S,E,L,K,A,R,E,V,T,Y,S,F,L,L,T,K,Y,C,K,A,L,L,L,Y,L,R,Y,N,T,K,S,S,I,K,G,-,-,-,-,-,-,N,K,D,I,N,Q,K,F,K,Q,N,V,R,E,R,Y,Y,R,E,V,A,N,I,A,R,L,L,Y,L,H,L,Y,L,S,V,T,R,E,V,S,W,K,L,H,A,D,Q,V,L,L,Q,S,V,F,V,S,L,S,Y,S,W,S,H,R,R,Q,F,E,C,I,F,H,P,I,L,F,N,H,G,I,V,N,L,E,N,N,P,L,T,F,K,E,L,Q,K,I,N,Y,R,R,H,I,L,G,L,P,L,I,R,A,G,L,V,E,E,D,N,Q,P,L,M,I,P,P,E,F,S,S,K,L,P,R,T,I,G,F,L,T,Q,Q,I,R,A,K,M,E,A,Y,S,D,N,H,P,V,T,P,K,F,P,R,I,E,H,S,Y,A,K,P,I,D,P,I,N,Y,G,T,T,I,E,A,M,M,D,P,P,S,P,S,A,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align4;UniRef90_Q9E205:-,-,-,-,-,P,P,R,V,A,S,P,A,V,L,Y,Q,Q,L,I,N,D,L,H,F,S,E,G,P,R,I,I,A,L,L,E,T,C,N,E,D,I,F,S,C,F,P,L,N,E,D,L,Y,T,D,T,I,V,F,S,T,N,P,S,D,I,I,E,L,E,T,S,E,T,P,E,-,-,P,I,N,L,I,T,K,G,-,C,D,L,P,S,L,P,S,T,Y,T,E,L,P,M,Y,V,E,N,V,Q,N,T,F,F,T,E,L,R,V,R,E,K,A,Y,L,R,L,L,I,L,Y,C,K,S,L,L,R,H,L,Q,G,I,S,R,R,S,S,V,G,A,R,S,Q,D,C,E,H,K,Y,I,T,Q,F,K,Q,S,I,R,L,R,Y,Y,R,E,V,A,K,L,A,R,L,L,Y,L,H,L,Y,I,T,V,T,R,Q,F,S,W,R,L,F,A,Q,Q,S,K,Y,P,D,V,F,A,A,M,K,F,M,W,L,E,N,R,Q,F,T,C,A,F,H,P,I,L,C,N,H,G,I,V,L,L,E,G,K,P,L,S,S,Q,R,L,R,E,V,N,Y,R,R,R,Q,L,G,L,P,L,V,R,C,A,L,I,E,E,K,G,V,P,L,V,Q,R,P,E,F,S,A,H,M,P,R,S,L,G,F,L,T,H,H,I,K,A,K,L,D,V,Y,S,S,K,H,S,Q,E,P,G,N,V,R,V,D,H,P,Y,A,R,N,V,N,N,I,N,Y,G,S,S,V,E,A,M,I,V,S,P,P,S,P,S,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align5;UniRef90_Q88530:-,-,L,P,S,P,E,-,A,A,S,P,N,L,L,Y,D,R,L,I,L,E,L,D,F,A,E,G,P,S,L,L,A,K,L,E,R,V,N,V,D,L,F,S,C,L,P,L,N,S,H,L,Y,K,H,A,K,I,L,S,T,C,P,R,E,V,L,D,A,V,Y,E,N,T,W,Q,Y,T,A,L,N,L,N,E,H,G,K,S,S,I,P,P,V,P,A,S,K,D,D,L,P,A,Y,V,T,A,V,Q,E,F,Y,L,E,E,L,E,A,R,E,Q,I,Y,A,K,L,F,F,G,Y,C,R,A,L,I,M,H,I,I,K,S,V,-,-,L,N,E,S,R,G,V,R,V,S,D,D,Y,V,Q,N,K,A,R,W,Y,I,S,N,N,Y,Y,R,D,A,V,R,I,A,K,L,L,Y,L,H,L,Y,L,S,T,T,E,I,V,S,Q,R,L,E,A,M,Q,T,S,L,Q,D,L,F,V,Y,L,R,C,E,W,G,Q,G,R,Q,F,W,C,I,F,Q,P,M,I,Y,N,H,G,V,P,M,I,E,G,R,A,L,T,S,L,E,L,G,S,S,N,Y,I,R,S,E,L,G,L,P,L,I,R,C,E,L,L,E,E,L,E,S,P,V,V,F,P,P,T,F,T,A,T,A,P,R,S,S,G,Y,L,F,H,N,I,R,A,K,M,E,L,Y,S,N,I,H,P,S,P,Q,L,S,G,L,S,D,H,T,Y,V,R,T,H,V,P,V,N,Y,G,T,T,V,E,V,L,L,D,A,S,D,P,D,S,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align6;UniRef90_B4XS08:-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,F,P,E,A,S,T,I,L,S,T,F,E,L,M,N,M,D,L,F,S,C,L,P,R,N,E,D,L,Y,R,N,A,A,L,L,S,G,S,V,T,E,V,I,E,A,-,-,S,E,I,P,I,D,G,E,I,D,L,N,A,H,G,S,K,Q,L,P,I,P,P,S,N,E,W,E,I,P,N,Y,V,E,A,V,Q,Q,F,F,L,S,E,L,R,A,R,E,E,S,Y,L,K,L,F,L,G,Y,C,R,A,I,V,N,Y,I,K,S,A,A,T,R,G,V,R,G,C,R,I,M,D,R,K,S,E,A,N,K,R,M,R,R,M,I,A,D,R,Y,Y,R,E,A,A,R,L,A,K,V,L,Y,L,H,L,Y,L,S,V,A,R,E,I,S,S,R,L,C,A,T,Q,M,Q,V,Q,N,V,F,V,Y,M,R,Y,E,W,Q,Q,Y,R,Q,F,T,C,L,F,H,P,I,M,F,N,H,G,V,V,L,L,N,G,E,P,L,Q,A,Q,K,L,R,E,V,N,Y,I,R,F,K,L,G,L,P,V,I,R,C,G,L,V,E,E,H,D,K,P,L,V,E,E,P,R,F,Y,G,N,L,P,R,S,S,G,F,L,T,E,L,I,R,S,K,M,E,A,Y,S,E,L,R,P,T,S,P,S,S,I,S,N,D,H,T,Y,A,K,Q,L,D,K,V,N,F,G,S,T,R,E,A,I,L,D,T,I,D,T,E,G,P,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align7;UniRef90_P09265:-,-,-,P,S,P,P,W,V,A,S,P,K,I,L,Y,Q,Q,L,I,R,D,L,D,F,S,E,G,P,R,L,L,S,C,L,E,T,W,N,E,D,L,F,S,C,F,P,I,N,E,D,L,Y,S,D,M,M,V,L,S,P,D,P,D,D,V,I,-,-,-,-,S,T,V,S,T,K,D,H,V,N,L,T,T,R,G,S,V,R,L,P,S,P,P,K,Q,P,T,G,L,P,A,Y,V,Q,E,V,Q,D,S,F,T,V,E,L,R,A,R,E,E,A,Y,T,K,L,L,V,T,Y,C,K,S,I,I,R,Y,L,Q,G,T,A,K,R,T,T,I,G,L,N,I,Q,N,P,D,Q,K,A,Y,T,Q,L,R,Q,S,I,L,L,R,Y,Y,R,E,V,A,S,L,A,R,L,L,Y,L,H,L,Y,L,T,V,T,R,E,F,S,W,R,L,Y,A,S,Q,S,A,H,P,D,V,F,A,A,L,K,F,T,W,T,E,R,R,Q,F,T,C,A,F,H,P,V,L,C,N,H,G,I,V,L,L,E,G,K,P,L,T,A,S,A,L,R,E,I,N,Y,R,R,R,E,L,G,L,P,L,V,R,C,G,L,V,E,E,N,K,S,P,L,V,Q,Q,P,S,F,S,V,H,L,P,R,S,V,G,F,L,T,H,H,I,K,R,K,L,D,A,Y,A,V,K,H,P,Q,E,P,R,H,V,R,A,D,H,P,Y,A,K,V,V,E,N,R,N,Y,G,S,S,I,E,A,M,I,L,A,P,-,-,P,S,P,S,E,-,-,-,-,-,-,-,-,-,-,-,
-align8;UniRef90_Q2QBC8:-,-,-,-,-,-,-,-,-,-,-,-,A,A,L,Y,N,R,L,L,E,D,L,G,F,G,D,G,P,A,L,C,T,I,L,D,S,W,N,E,D,L,F,S,G,L,P,A,N,P,D,L,Y,R,E,C,R,F,L,S,T,L,P,G,D,V,V,V,W,G,D,A,H,A,P,D,R,G,P,I,D,I,R,A,H,G,S,A,P,F,P,S,L,P,A,R,R,E,G,L,P,A,Y,C,E,A,L,T,R,F,F,H,S,E,L,R,A,R,E,E,S,Y,R,R,V,L,A,N,F,C,S,A,L,Y,R,Y,L,R,A,S,T,R,Q,L,H,R,Q,A,A,L,K,G,R,P,R,D,L,Q,E,M,L,R,A,A,V,A,E,R,Y,Y,R,E,T,A,R,L,A,R,V,L,F,L,H,L,Y,L,F,L,V,R,E,I,L,W,A,V,Y,A,E,Q,V,M,R,Q,D,L,F,E,G,L,R,C,D,L,E,Q,A,R,Q,L,S,C,L,F,Q,P,L,L,F,V,H,G,A,L,S,V,G,G,E,P,V,S,P,A,R,L,R,E,L,N,H,V,R,E,R,L,N,L,P,L,I,R,S,A,A,T,E,E,P,G,A,A,L,T,A,A,P,A,L,Q,T,Q,R,A,R,S,S,G,Y,F,M,T,L,I,R,V,K,L,D,A,Y,S,E,W,S,A,G,S,E,G,A,V,L,R,E,H,A,Y,S,R,R,R,E,R,T,N,Y,G,S,S,I,E,G,L,L,E,L,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align9;UniRef90_Q90603:-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,Y,T,R,L,L,H,E,L,D,F,V,E,G,P,S,I,L,A,R,L,E,K,I,N,V,D,L,F,S,C,F,P,H,N,K,H,L,Y,E,H,A,K,I,L,S,V,S,P,S,E,V,L,E,E,L,S,K,N,T,W,T,Y,T,A,L,N,L,N,E,H,G,E,V,A,L,P,M,P,P,T,T,K,A,D,L,P,S,Y,V,D,D,I,Q,N,F,Y,L,G,E,L,E,A,R,E,K,S,Y,A,T,M,F,Y,G,Y,C,R,A,L,A,E,Y,I,R,Q,S,A,I,K,D,L,R,D,A,-,-,R,V,E,D,K,N,I,G,A,C,S,K,A,R,Q,Y,I,A,E,R,Y,Y,R,E,A,F,A,N,V,L,Y,V,H,L,Y,L,S,T,T,R,D,V,S,Q,R,L,E,A,S,Q,M,G,R,Q,N,I,F,V,Y,L,K,C,E,W,L,Q,E,R,H,F,H,C,L,F,Q,P,V,I,F,N,H,G,V,V,I,V,E,G,R,V,L,T,A,P,E,L,R,A,Q,N,Y,I,R,S,E,F,G,L,P,L,I,R,C,K,L,V,E,E,P,D,M,P,L,I,S,P,P,P,F,S,G,D,A,P,R,A,S,V,Y,L,L,Q,C,I,R,S,K,L,E,V,Y,S,S,H,P,P,N,P,Q,L,H,V,H,K,E,H,V,H,Q,K,L,E,S,P,P,N,Y,G,T,T,V,E,A,L,L,M,D,S,S,D,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align10;UniRef90_O89246:-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,E,L,D,F,T,E,G,P,S,L,L,S,R,L,E,K,L,N,V,D,L,F,S,C,F,P,I,N,G,H,L,Y,E,H,A,T,L,L,S,V,S,P,S,E,V,L,D,A,A,S,E,E,K,W,A,Y,T,A,I,N,L,N,E,H,C,G,M,E,V,P,R,P,P,L,T,K,D,G,L,P,V,Y,V,T,E,I,Q,K,F,F,S,M,E,L,E,A,R,E,K,S,Y,V,T,L,L,C,G,Y,C,R,A,L,A,C,Y,L,R,Q,G,A,N,E,P,S,R,C,D,M,C,V,G,G,S,-,-,-,-,E,T,P,R,R,S,I,A,G,A,Y,Y,R,E,A,A,R,F,A,R,L,L,Y,M,H,L,Y,L,S,V,T,R,D,V,S,R,R,L,E,A,S,Q,R,K,R,Q,N,L,F,A,H,L,R,C,D,W,H,Q,L,R,H,F,Q,C,L,F,Q,P,V,I,F,N,H,G,V,V,I,V,E,G,R,A,L,T,A,A,E,L,R,T,Q,N,Y,V,R,S,E,L,G,L,P,V,M,R,C,E,L,V,E,E,R,G,M,P,L,T,A,P,P,A,F,L,A,N,A,P,R,A,S,A,Y,L,F,Q,C,I,K,S,K,L,E,V,Y,S,L,M,H,P,P,R,P,R,S,S,A,R,G,E,S,G,R,A,G,K,A,G,P,S,H,G,T,I,V,K,A,M,L,R,D,S,T,H,P,G,P,A,I,A,D,I,A,A,A,R,-,-,-,-,
-align11;UniRef90_Q5PP87:-,-,-,-,-,-,-,-,-,-,S,P,D,A,L,Y,Q,R,L,I,S,D,L,A,F,D,E,G,P,A,L,L,G,A,M,E,R,W,N,E,D,L,F,S,C,L,P,G,N,E,D,L,Y,A,R,L,V,M,L,S,A,S,A,D,E,V,A,A,Q,V,R,A,P,T,A,D,A,S,-,V,D,L,G,V,P,G,A,E,P,M,P,R,V,P,A,V,E,E,E,L,P,A,Y,V,A,A,V,E,R,F,F,V,S,T,L,R,A,R,E,E,R,Y,A,R,L,L,D,A,Y,C,R,A,V,L,R,Y,L,H,A,Q,A,R,R,D,-,-,-,-,-,-,-,-,-,-,-,-,-,E,G,K,L,R,Q,L,V,R,G,R,Y,Y,R,D,V,A,R,L,A,P,W,L,F,L,H,L,Y,V,A,T,A,R,E,L,S,W,R,L,H,A,D,Q,V,V,A,Q,D,V,F,M,S,L,R,Y,E,W,D,Q,A,R,Q,L,T,C,L,F,H,P,V,L,F,N,H,G,V,V,L,L,S,G,A,P,V,P,A,A,Q,L,R,A,V,N,H,R,R,R,E,L,G,L,P,L,V,R,A,G,L,I,E,E,D,G,A,D,L,V,E,E,P,P,F,S,A,A,L,P,R,A,A,G,Y,L,S,H,Q,V,R,I,K,M,E,A,Y,S,-,-,-,-,-,-,-,-,R,E,Y,R,D,H,T,Y,C,R,P,P,S,P,V,S,Y,G,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align12;UniRef90_Q65819:-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,E,R,M,Q,A,E,L,G,F,P,D,G,P,A,L,L,R,A,M,E,R,W,N,E,D,L,F,S,C,L,P,T,N,A,D,L,Y,A,D,A,A,L,L,S,A,D,A,D,A,V,V,G,A,M,Y,L,A,V,P,D,A,E,R,L,D,L,N,A,H,A,N,Q,P,L,P,A,P,P,A,S,E,E,G,L,P,E,Y,V,A,G,V,Q,A,H,F,L,A,E,L,R,A,R,E,E,R,Y,A,G,L,F,L,G,Y,C,R,A,L,L,Q,H,L,R,A,-,-,-,-,T,A,A,R,G,R,G,A,A,G,A,G,A,Q,A,D,R,L,R,Q,L,V,A,A,R,Y,Y,R,E,A,S,R,L,A,R,L,A,F,A,H,M,Y,V,A,T,A,R,E,V,S,W,R,L,H,S,Q,Q,S,Q,A,Q,G,V,F,V,S,L,Y,Y,A,W,P,Q,R,R,Q,F,T,C,L,F,H,P,V,L,F,N,H,G,V,V,A,L,E,D,G,F,L,D,A,A,E,L,R,R,L,N,Y,R,R,R,E,L,G,L,P,L,V,R,A,G,L,V,E,V,E,V,G,P,L,V,E,E,P,P,F,S,G,S,L,P,R,A,L,G,F,L,N,Y,Q,V,R,A,K,M,G,A,P,A,E,-,-,A,G,G,R,L,A,P,E,R,E,H,S,Y,A,R,P,R,G,A,I,N,Y,G,T,T,P,E,A,M,L,R,P,P,S,P,S,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-align13;UniRef90_O56869:-,R,N,P,G,P,P,A,L,V,S,A,S,F,L,A,K,N,A,L,T,E,L,Q,F,A,D,W,D,K,I,Q,H,V,L,K,T,I,N,I,D,I,F,S,C,V,P,V,G,E,N,G,L,C,N,M,D,W,F,S,L,D,T,E,K,I,W,T,L,M,D,S,G,T,P,N,V,S,P,N,L,L,I,T,P,G,P,P,-,-,P,E,C,I,K,T,P,E,E,A,P,A,Y,F,E,A,I,S,N,Y,F,E,S,V,L,A,A,R,E,A,E,Y,A,K,L,L,A,E,Y,A,K,S,L,A,K,Y,I,R,H,K,S,Q,K,V,G,R,-,-,G,L,R,A,L,E,L,D,T,E,E,A,K,K,R,L,M,K,S,E,Y,Y,K,G,I,E,K,L,L,I,I,F,L,V,H,L,V,L,N,A,C,R,D,V,A,R,I,I,W,V,Q,Q,R,D,S,S,S,V,L,Q,K,V,T,Y,R,W,E,S,-,Q,Q,L,H,C,I,F,Q,P,L,L,V,S,P,G,P,V,F,L,D,N,D,P,L,P,L,Q,T,L,Q,H,V,N,Y,V,R,Y,L,L,G,V,P,V,L,R,F,S,M,I,E,E,S,P,S,A,Q,Y,I,P,-,-,-,-,Y,D,K,T,A,P,S,A,Y,D,V,L,A,T,I,A,R,-,-,-,-,T,C,L,T,S,S,G,C,S,R,A,S,H,D,H,T,Y,A,R,D,N,E,K,P,N,Y,S,S,S,R,I,V,L,L,A,D,S,A,L,D,T,P,-,-,-,-,-,-,-,-,-,-,-,-,-,
-
-jnetpred:-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,E,E,-,-,-,-,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,E,E,E,E,E,E,E,-,-,-,H,-,H,H,E,E,-,-,-,-,E,E,-,-,-,-,E,E,E,E,-,-,-,-,-,-,-,-,H,H,H,H,H,-,-,H,H,H,-,-,-,-,-,E,E,E,E,E,-,-,-,-,-,-,-,-,-,E,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-JNETCONF:9,9,8,8,8,8,8,7,7,6,3,6,8,8,9,9,9,9,8,7,4,4,7,8,8,8,7,4,6,8,8,9,9,9,9,9,8,5,4,2,3,2,2,2,3,2,3,5,6,6,5,1,0,1,2,2,2,4,0,5,7,6,1,6,8,8,8,7,6,3,2,3,6,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,6,4,1,0,2,3,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,8,7,3,2,1,4,1,1,1,5,7,7,7,7,5,1,7,8,9,9,9,9,9,9,9,9,9,8,5,4,6,8,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,9,8,6,1,1,1,4,4,5,5,2,1,3,5,4,5,6,4,4,6,3,0,1,1,1,1,1,1,3,4,5,1,1,2,5,6,4,5,7,7,5,3,6,8,7,7,6,5,4,1,0,0,1,1,1,0,4,3,2,1,0,5,7,5,1,1,1,1,1,0,0,1,7,8,7,7,5,2,1,0,3,6,7,6,5,6,7,7,6,2,1,2,6,6,8,9,9,9,9,8,8,7,5,1,0,2,4,6,7,7,7,7,7,6,7,7,7,7,7,7,6,4,1,4,6,7,7,7,7,7,7,7,6,5,1,0,3,3,3,2,1,6,7,7,7,7,6,5,4,4,5,7,7,7,7,6,3,3,4,2,6,
-JNETSOL25:-,-,-,-,-,-,-,-,B,-,B,B,-,B,B,B,-,-,B,B,-,-,B,-,B,-,-,B,-,-,B,B,-,B,B,-,-,B,-,B,B,B,B,B,B,B,B,B,B,-,-,B,B,B,B,B,-,B,B,B,B,B,B,-,-,B,B,-,B,B,-,-,-,B,B,-,-,-,B,B,B,B,-,B,-,B,-,-,-,B,-,-,B,B,-,-,-,-,-,B,-,-,B,B,-,-,B,-,-,B,B,-,-,-,B,-,B,B,B,-,-,B,B,-,B,B,B,-,B,B,B,B,B,B,-,B,B,-,-,-,B,-,-,-,B,-,-,B,-,B,-,-,-,-,-,-,B,-,-,B,B,-,B,B,B,-,-,-,B,B,-,B,B,B,-,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,-,B,-,-,-,-,-,B,B,B,B,B,-,B,-,B,-,-,-,-,-,B,-,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,-,-,-,B,B,-,B,-,-,B,-,-,B,-,B,B,B,-,-,B,-,B,B,B,B,B,B,-,B,B,-,-,-,-,-,-,B,B,-,-,B,-,B,-,B,-,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,B,-,B,B,B,-,B,-,-,-,-,-,-,-,-,B,-,-,B,B,B,B,B,-,-,-,-,B,B,B,B,B,B,B,B,B,B,B,-,B,B,-,-,-,B,B,-,-,B,-,B,B,B,-,-,B,-,-,-,
-JNETSOL5:-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,B,-,-,B,-,-,-,-,-,-,-,-,B,-,-,B,B,-,-,B,-,-,-,-,-,-,B,B,-,B,B,-,-,-,-,-,-,B,-,-,B,-,B,B,-,-,-,-,-,-,B,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,B,-,-,B,-,-,-,-,-,-,-,B,-,-,-,-,-,-,B,-,-,B,B,-,-,B,B,-,B,B,B,-,-,B,-,-,-,B,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,B,-,-,-,B,-,-,-,-,-,-,-,B,-,-,B,B,-,B,B,-,B,-,-,-,B,-,B,B,-,-,B,B,-,-,B,-,-,-,-,-,-,-,-,-,B,B,-,-,B,-,B,-,-,-,-,-,-,-,B,-,B,B,B,-,B,-,B,B,-,-,B,B,B,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,B,-,B,B,-,B,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,B,-,B,-,B,-,-,-,B,-,-,-,B,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,B,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
-JNETSOL0:-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,B,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,B,-,-,B,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,
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-JNETPSSM:-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,E,E,E,E,E,E,E,-,-,H,H,H,H,H,H,H,H,E,-,-,-,E,E,-,-,-,E,E,E,E,-,-,-,-,-,-,-,-,-,H,-,-,-,-,H,H,H,H,H,-,-,-,-,H,H,H,H,H,H,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,H,H,H,-,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,E,E,E,E,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,E,E,-,-,
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+++ /dev/null
-
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-JNETJURY: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,*,*,*,*,*, , , , , , , , ,*,*,*, ,*,*, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,*,*,*,*, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,*,*, , , , , , , , , , , , , , , , , , , , , , ,*, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,*,*,*, , , , , , , , , , , , , ,*,*,*,*,*,*,*,*,*, , ,*, ,*, , , , , , , , , , , , , , , ,*, ,*,*,*, ,*, , ,*,*, , , , ,*,*,*,*,*,*,*,*, , , , , ,*,*,*, , , , , , , , , ,*, , , , , , , , , , , , , , ,*,*, , , , , , , , , , , , , , , , , , , , , , , , , , , , ,*, ,*,*,*,*, , , , , , , , , , , , , , , , , ,*,*, , ,
-JNETPROPE:0.0572,0.0534,0.0573,0.0662,0.0689,0.0690,0.0700,0.0730,0.0701,0.0582,0.0444,0.0386,0.0378,0.0315,0.0228,0.0187,0.0186,0.0191,0.0235,0.0286,0.0287,0.0237,0.0246,0.0299,0.0450,0.0529,0.0433,0.0360,0.0328,0.0290,0.0233,0.0147,0.0104,0.0084,0.0085,0.0093,0.0104,0.0112,0.0138,0.0155,0.0198,0.0284,0.0318,0.0259,0.0269,0.0379,0.0600,0.0980,0.0947,0.0727,0.0636,0.0901,0.1401,0.1338,0.0752,0.1197,0.3245,0.3949,0.2272,0.0978,0.0486,0.0342,0.0366,0.0487,0.0428,0.0332,0.0268,0.0214,0.0247,0.0339,0.0403,0.0318,0.0366,0.0498,0.0758,0.1016,0.1083,0.1106,0.1121,0.1125,0.1243,0.1243,0.1243,0.1243,0.1243,0.1243,0.1243,0.1132,0.1172,0.1204,0.1211,0.1096,0.1062,0.0892,0.0745,0.0798,0.1029,0.0703,0.0438,0.0287,0.0263,0.0258,0.0209,0.0142,0.0102,0.0077,0.0078,0.0078,0.0079,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0078,0.0084,0.0095,0.0112,0.0138,0.0155,0.0198,0.0284,0.0318,0.0259,0.0269,0.0336,0.0466,0.0632,0.0606,0.0474,0.0373,0.0341,0.0325,0.0233,0.0147,0.0104,0.0084,0.0078,0.0078,0.0079,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0074,0.0078,0.0084,0.0095,0.0112,0.0138,0.0155,0.0180,0.0295,0.0272,0.0290,0.0285,0.0422,0.0586,0.0705,0.0877,0.3068,0.5139,0.6322,0.7666,0.8276,0.8401,0.8474,0.7646,0.2949,0.0781,0.0839,0.0938,0.1038,0.2214,0.4179,0.5617,0.4950,0.1950,0.1360,0.1442,0.3001,0.7048,0.6736,0.3115,0.1422,0.1365,0.2937,0.7338,0.8800,0.8749,0.7323,0.3109,0.1439,0.1019,0.0993,0.1033,0.1083,0.0945,0.0757,0.1097,0.0805,0.0510,0.0652,0.0807,0.0735,0.1013,0.1828,0.2596,0.1901,0.0808,0.0600,0.0534,0.0784,0.3078,0.7876,0.9106,0.9147,0.9028,0.8201,0.6491,0.7358,0.6934,0.3043,0.1441,0.1220,0.1265,0.1407,0.2684,0.4021,0.2623,0.1590,0.1099,0.1033,0.0991,0.0914,0.0979,0.0780,0.0640,0.0444,0.0386,0.0325,0.0233,0.0147,0.0104,0.0093,0.0086,0.0096,0.0109,0.0117,0.0127,0.0179,0.0227,0.0256,0.0262,0.0417,0.0435,0.0568,0.0687,0.0825,0.1052,0.1099,0.1112,0.1245,0.1217,0.1248,0.1301,0.1231,0.1244,0.1288,0.1304,0.1498,0.2376,0.3707,0.2419,0.1615,0.1365,0.1143,0.1104,0.0983,0.1020,0.0962,0.1210,0.1222,0.1577,0.2254,0.1859,0.1144,0.0820,0.0608,0.0504,0.0390,0.0465,0.0539,0.0936,0.0880,0.0819,0.0983,0.1401,0.1027,0.0993,0.0893,0.0981,0.1168,0.1105,0.1050,0.0978,0.0812,0.0846,0.0673,0.0504,0.0472,
-JNETPROPH:0.0298,0.0316,0.0441,0.0575,0.0693,0.0838,0.0961,0.1082,0.1197,0.1744,0.3188,0.8041,0.8978,0.9327,0.9522,0.9575,0.9555,0.9468,0.9247,0.8731,0.7214,0.3295,0.1373,0.0803,0.0742,0.0820,0.1291,0.2760,0.7956,0.9014,0.9378,0.9553,0.9601,0.9614,0.9620,0.9626,0.9600,0.9537,0.9496,0.9413,0.9220,0.8705,0.7362,0.3450,0.1488,0.0932,0.0848,0.0813,0.1013,0.1898,0.3102,0.5414,0.5234,0.4624,0.2607,0.1532,0.1657,0.1047,0.0505,0.0553,0.1060,0.2504,0.7728,0.8866,0.9189,0.9305,0.9361,0.9439,0.9243,0.8691,0.7410,0.3845,0.1807,0.1094,0.0933,0.0890,0.0909,0.0979,0.1050,0.1075,0.1025,0.1025,0.1025,0.1025,0.1025,0.1025,0.1025,0.1077,0.1005,0.1015,0.1034,0.1114,0.1174,0.1276,0.1528,0.1877,0.3335,0.2565,0.2504,0.3454,0.8252,0.9169,0.9409,0.9543,0.9581,0.9554,0.9590,0.9557,0.9510,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9475,0.9526,0.9539,0.9537,0.9496,0.9413,0.9220,0.8705,0.7362,0.3450,0.1488,0.0862,0.0751,0.0783,0.0929,0.1469,0.2930,0.7968,0.9038,0.9378,0.9553,0.9601,0.9614,0.9590,0.9557,0.9510,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9409,0.9475,0.9526,0.9539,0.9537,0.9496,0.9413,0.9200,0.8517,0.7411,0.3224,0.1399,0.0823,0.0694,0.0672,0.0852,0.1939,0.1399,0.1357,0.0858,0.0640,0.0467,0.0326,0.0308,0.0286,0.0523,0.1003,0.3202,0.2069,0.2503,0.2674,0.2013,0.1280,0.0684,0.0386,0.0299,0.0311,0.0401,0.0390,0.0321,0.0276,0.0294,0.0348,0.0414,0.0378,0.0353,0.0347,0.0385,0.0492,0.0655,0.0757,0.0903,0.1146,0.1528,0.2787,0.5454,0.6142,0.5410,0.6756,0.5812,0.3347,0.2689,0.4100,0.3735,0.3056,0.1859,0.1279,0.0557,0.0268,0.0239,0.0307,0.0209,0.0240,0.0243,0.0225,0.0179,0.0323,0.0339,0.0290,0.0325,0.0547,0.0528,0.0529,0.0674,0.0841,0.0643,0.0734,0.0889,0.0958,0.0916,0.0959,0.1049,0.1235,0.1544,0.3188,0.8041,0.9038,0.9378,0.9553,0.9601,0.9635,0.9624,0.9602,0.9591,0.9508,0.9471,0.9333,0.8991,0.8242,0.5646,0.5380,0.2618,0.1565,0.1089,0.0983,0.0977,0.0982,0.1004,0.1007,0.0984,0.0961,0.0961,0.0988,0.0941,0.0998,0.0846,0.0790,0.0888,0.0920,0.0759,0.0781,0.0800,0.0945,0.0904,0.0944,0.0902,0.0942,0.0757,0.1007,0.1955,0.4877,0.6580,0.7184,0.7695,0.7830,0.6755,0.4004,0.1905,0.1118,0.0904,0.1061,0.1453,0.1867,0.2611,0.2115,0.1665,0.1363,0.1179,0.1108,0.1045,0.0966,0.0907,0.0791,0.0656,0.0495,0.0345,0.0251,
-JNETPROPC:0.9180,0.9303,0.9164,0.8871,0.8701,0.8544,0.8504,0.8382,0.8361,0.7921,0.6686,0.2123,0.1066,0.0724,0.0569,0.0561,0.0542,0.0608,0.0815,0.1254,0.2798,0.6569,0.8413,0.8972,0.8913,0.8730,0.8333,0.7020,0.2179,0.1104,0.0708,0.0544,0.0501,0.0463,0.0433,0.0404,0.0406,0.0489,0.0507,0.0605,0.0815,0.1306,0.2683,0.6411,0.8328,0.8767,0.8706,0.8425,0.8263,0.7564,0.6530,0.3826,0.3156,0.3714,0.5782,0.6085,0.3435,0.3881,0.7046,0.8492,0.8534,0.7354,0.2403,0.1078,0.0821,0.0760,0.0718,0.0681,0.0860,0.1344,0.2530,0.6131,0.8038,0.8612,0.8538,0.8317,0.8277,0.8213,0.8110,0.8105,0.8040,0.8040,0.8040,0.8040,0.8040,0.8040,0.8040,0.8129,0.8135,0.8105,0.8020,0.8138,0.8136,0.8133,0.7902,0.7466,0.5949,0.6924,0.7323,0.6712,0.2055,0.0885,0.0629,0.0517,0.0486,0.0535,0.0459,0.0458,0.0470,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0517,0.0480,0.0473,0.0489,0.0507,0.0605,0.0815,0.1306,0.2683,0.6411,0.8328,0.8862,0.8867,0.8670,0.8595,0.8195,0.6955,0.2274,0.1049,0.0708,0.0544,0.0501,0.0463,0.0459,0.0458,0.0470,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0565,0.0517,0.0480,0.0473,0.0489,0.0507,0.0605,0.0826,0.1353,0.2635,0.6387,0.8440,0.8821,0.8900,0.8548,0.7934,0.3300,0.2073,0.1362,0.1026,0.1006,0.1059,0.1528,0.2492,0.6780,0.8597,0.7946,0.5542,0.5679,0.3198,0.1705,0.1465,0.2348,0.6619,0.8451,0.8456,0.6821,0.2787,0.2872,0.6278,0.8293,0.8392,0.6733,0.2333,0.1131,0.1239,0.2676,0.6319,0.8095,0.8485,0.8434,0.8308,0.7893,0.7501,0.6551,0.3678,0.3499,0.4331,0.3053,0.3797,0.5618,0.5121,0.2493,0.2185,0.3274,0.6381,0.7840,0.9028,0.9110,0.6985,0.2206,0.1074,0.0925,0.1085,0.1886,0.3634,0.2478,0.3031,0.6527,0.8214,0.8270,0.8252,0.8108,0.6544,0.5316,0.6683,0.7669,0.8271,0.8295,0.8345,0.8369,0.8297,0.8268,0.7931,0.6686,0.2123,0.1049,0.0708,0.0544,0.0501,0.0445,0.0431,0.0426,0.0422,0.0480,0.0571,0.0684,0.1019,0.1898,0.4521,0.4635,0.7081,0.7965,0.8363,0.8466,0.8231,0.8178,0.8209,0.8032,0.8068,0.8028,0.7984,0.8011,0.8050,0.7992,0.8022,0.7809,0.6720,0.5492,0.6765,0.7610,0.8041,0.8125,0.8228,0.8298,0.8284,0.8379,0.8255,0.7919,0.5852,0.2151,0.1421,0.1534,0.1752,0.2069,0.3370,0.6099,0.7786,0.8582,0.8358,0.8253,0.7850,0.7255,0.6058,0.6916,0.7399,0.7972,0.8156,0.7868,0.7897,0.7991,0.8008,0.8324,0.8472,0.8882,0.9280,0.9424,
+++ /dev/null
-
-Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts
- A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V
- 1 S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -2 -2 -1 4 1 -3 -2 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.00 0.00
- 2 R -1 6 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.00 0.00
- 3 M -2 -2 -3 -4 -2 -2 -3 -4 -3 1 4 -2 5 0 -3 -2 -1 -2 -1 1 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0.46 0.07
- 4 P -1 -3 -3 -2 -3 -2 -2 -3 -3 -3 -4 -2 -3 -4 8 -1 -2 -4 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.20 0.13
- 5 S 1 -1 0 -1 -1 0 -1 -1 -1 -3 -3 -1 -2 -3 -1 5 1 -3 -2 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0.63 0.13
- 6 P -2 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -3 -5 8 -2 -2 -5 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.29 0.21
- 7 P -2 -2 -2 -1 -4 -1 2 -3 -2 -4 -4 -1 -3 -5 8 -1 -2 -4 -4 -3 0 0 0 0 0 0 19 0 0 0 0 0 0 0 81 0 0 0 0 0 1.76 0.21
- 8 M 1 3 -2 -3 -3 0 -1 -2 -2 -2 -1 3 4 -2 -3 -1 -2 7 -1 -2 19 17 0 0 0 0 0 0 0 0 0 27 20 0 0 0 0 17 0 0 0.46 0.21
- 9 P 2 -2 -2 -2 -1 -2 -2 -2 -2 0 -1 -2 -1 -2 4 -1 -1 -3 -2 3 28 1 1 1 0 1 1 1 0 1 2 1 0 1 21 1 1 0 1 35 0.36 0.17
- 10 V 4 -2 -2 -3 -1 -2 -2 -1 -3 -1 -2 -2 -1 -3 -2 0 2 -3 -2 2 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 20 0.44 0.21
- 11 P 0 -2 0 -1 -2 -1 -1 -1 -2 -3 -3 -1 -2 -3 4 5 1 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 80 0 0 0 0 0.73 0.21
- 12 P -2 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -4 -5 9 -2 -2 -5 -4 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.35 0.27
- 13 A 3 -2 2 2 -2 -1 -1 1 -2 -3 -3 1 -2 -4 -2 1 1 -4 -3 -2 40 0 12 11 0 0 0 7 0 0 0 11 0 0 0 10 7 0 0 0 0.36 0.30
- 14 A 4 -3 -3 -3 -2 -2 -2 -2 -3 1 1 -2 -1 -2 -2 1 -1 -4 -3 1 56 0 0 0 0 0 0 0 0 11 12 0 0 0 0 10 0 0 0 11 0.40 0.30
- 15 L -3 -3 -5 -5 -2 -3 -4 -5 -4 1 6 -4 1 -1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0.95 0.36
- 16 F 1 -3 -3 -4 -3 -3 -3 -4 0 0 -2 -3 -2 4 -4 -2 -2 0 7 -2 15 0 0 0 0 0 0 0 0 7 0 0 0 15 0 0 0 0 62 0 0.98 0.39
- 17 N -2 0 3 1 -4 5 2 -3 -1 -4 -4 3 -2 -4 -3 -1 1 -4 -3 -4 0 0 20 8 0 32 12 0 0 0 0 21 0 0 0 0 8 0 0 0 0.61 0.41
- 18 R -3 6 3 -2 -5 3 -1 -3 -1 -4 -4 1 -3 -4 -3 -1 -2 -4 -3 -4 0 64 21 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.97 0.41
- 19 L 1 -3 -4 -5 -2 -3 -4 -4 -4 0 5 -3 4 -1 -4 -3 -2 -3 -2 0 14 0 0 0 0 0 0 0 0 0 74 0 12 0 0 0 0 0 0 0 0.72 0.41
- 20 L -3 -3 -4 -4 -3 3 -2 -5 -3 4 4 -2 0 -1 -4 -3 -2 -3 -2 0 0 0 0 0 0 21 0 0 0 30 49 0 0 0 0 0 0 0 0 0 0.59 0.41
- 21 D 1 1 1 3 -3 -1 0 0 3 -3 -1 -1 -2 -4 -3 1 2 -4 -3 -3 17 8 7 20 0 0 6 5 8 0 8 0 0 0 0 7 14 0 0 0 0.26 0.41
- 22 D -2 -2 -1 5 -5 0 6 -3 -2 -5 -5 -1 -4 -5 -3 -1 -2 -5 -4 -4 0 0 0 39 0 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 1.12 0.43
- 23 L -3 -4 -5 -5 -3 -4 -4 -5 -4 1 6 -4 1 -1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1.04 0.43
- 24 G 0 -2 1 4 -4 2 -1 4 2 -5 -5 -2 -3 -4 -3 -1 -2 -4 -3 -4 6 0 6 28 0 14 0 39 7 0 0 0 0 0 0 0 0 0 0 0 0.68 0.43
- 25 F -4 -4 -4 -5 -4 -5 -5 -5 -3 -1 -1 -5 -1 8 -5 -4 -3 0 2 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 1.58 0.43
- 26 S 2 -3 -2 0 -3 -2 -2 0 -3 -3 -3 -2 -3 -4 5 3 1 -4 -3 0 21 0 0 6 0 0 0 6 0 0 0 0 0 0 26 27 6 0 0 7 0.57 0.43
- 27 A 1 -2 -1 4 -4 0 5 -3 -2 -4 -4 -1 -3 -5 -2 -1 -2 -5 -4 -4 13 0 0 30 0 0 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0.91 0.43
- 28 G -1 -4 -2 -3 -4 -3 -4 7 -3 -5 -5 -3 -4 -3 -4 -2 -3 6 -3 -5 0 0 0 0 0 0 0 86 0 0 0 0 0 0 0 0 0 14 0 0 1.48 0.43
- 29 P -2 -3 -2 2 -4 1 -1 -3 -3 -4 -4 -2 -4 -5 8 -2 -2 -5 -4 -4 0 0 0 13 0 9 0 0 0 0 0 0 0 0 78 0 0 0 0 0 1.85 0.46
- 30 A 4 2 -2 -2 -3 -1 0 -2 -2 -3 -3 2 -3 -4 -2 3 0 -4 -3 -2 38 13 0 0 0 0 6 0 0 0 0 13 0 0 0 25 4 0 0 0 0.48 0.46
- 31 L -1 -4 -5 -5 -3 -4 -4 -5 -4 4 5 -4 2 -1 -4 -3 -2 -3 -2 0 6 0 0 0 0 0 0 0 0 26 64 0 4 0 0 0 0 0 0 0 0.75 0.46
- 32 C -2 -3 -4 -4 5 2 -3 -4 -3 1 4 -3 0 -2 -4 -1 -2 -3 -3 -1 0 0 0 0 17 13 0 0 0 6 57 0 0 0 0 6 0 0 0 0 0.62 0.46
- 33 T 2 1 -1 -2 -3 -2 -2 0 4 -3 -3 -1 -2 0 -3 3 3 -4 -2 -2 20 11 0 0 0 0 0 6 13 0 0 0 0 4 0 23 23 0 0 0 0.40 0.46
- 34 M 2 2 -3 -4 3 -2 -3 -3 -3 2 0 0 3 -3 -3 0 -2 -4 -3 2 25 12 0 0 7 0 0 0 0 11 6 7 12 0 0 6 0 0 0 13 0.28 0.46
- 35 L -3 -3 -4 -5 -3 -3 -4 -5 -4 0 5 -3 6 -1 -4 -4 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 69 0 31 0 0 0 0 0 0 0 0.94 0.46
- 36 D -2 -1 -1 3 -5 0 6 -3 -2 -5 -4 2 -3 -5 -2 0 -2 -5 -4 -4 0 0 0 17 0 0 64 0 0 0 0 13 0 0 0 6 0 0 0 0 0.93 0.46
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-
- K Lambda
-Standard Ungapped 0.1374 0.3234
-Standard Gapped 0.0410 0.2670
-PSI Ungapped 0.1702 0.3177
-PSI Gapped 0.0521 0.2670
+++ /dev/null
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-0.11920292 0.95257413 0.11920292 0.04742587 0.04742587 0.11920292 0.11920292 0.73105858 0.88079708 0.11920292 0.88079708 0.26894142 0.98201379 0.11920292 0.04742587 0.88079708 0.11920292 0.04742587 0.73105858 0.11920292
-0.73105858 0.99330715 0.73105858 0.11920292 0.04742587 0.26894142 0.11920292 0.04742587 0.98201379 0.50000000 0.04742587 0.73105858 0.11920292 0.04742587 0.04742587 0.50000000 0.11920292 0.01798621 0.11920292 0.26894142
-0.11920292 0.11920292 0.26894142 0.99330715 0.00669285 0.50000000 0.99330715 0.04742587 0.11920292 0.00669285 0.00669285 0.26894142 0.01798621 0.00669285 0.04742587 0.26894142 0.11920292 0.00669285 0.01798621 0.01798621
-0.04742587 0.26894142 0.50000000 0.11920292 0.01798621 0.26894142 0.26894142 0.04742587 0.99995460 0.00669285 0.01798621 0.11920292 0.04742587 0.11920292 0.01798621 0.11920292 0.04742587 0.01798621 0.73105858 0.00669285
-0.88079708 0.11920292 0.11920292 0.11920292 0.11920292 0.11920292 0.11920292 0.11920292 0.04742587 0.11920292 0.04742587 0.11920292 0.11920292 0.01798621 0.88079708 0.95257413 0.98201379 0.01798621 0.04742587 0.50000000
-0.04742587 0.04742587 0.04742587 0.01798621 0.01798621 0.11920292 0.04742587 0.01798621 0.95257413 0.04742587 0.11920292 0.04742587 0.11920292 0.88079708 0.01798621 0.04742587 0.04742587 0.73105858 0.99987661 0.04742587
-0.98201379 0.11920292 0.11920292 0.11920292 0.95257413 0.73105858 0.11920292 0.11920292 0.04742587 0.11920292 0.04742587 0.11920292 0.11920292 0.01798621 0.11920292 0.95257413 0.26894142 0.01798621 0.04742587 0.50000000
-0.11920292 0.99908895 0.11920292 0.04742587 0.00669285 0.50000000 0.26894142 0.04742587 0.11920292 0.01798621 0.01798621 0.98201379 0.04742587 0.01798621 0.04742587 0.11920292 0.11920292 0.01798621 0.04742587 0.01798621
-0.50000000 0.73105858 0.50000000 0.88079708 0.04742587 0.50000000 0.11920292 0.26894142 0.04742587 0.50000000 0.26894142 0.11920292 0.11920292 0.04742587 0.98201379 0.26894142 0.50000000 0.01798621 0.04742587 0.50000000
-0.11920292 0.98201379 0.88079708 0.50000000 0.01798621 0.26894142 0.50000000 0.26894142 0.88079708 0.50000000 0.26894142 0.26894142 0.11920292 0.04742587 0.88079708 0.11920292 0.11920292 0.01798621 0.04742587 0.73105858
-0.26894142 0.11920292 0.73105858 0.88079708 0.04742587 0.26894142 0.95257413 0.88079708 0.11920292 0.04742587 0.01798621 0.26894142 0.04742587 0.01798621 0.04742587 0.73105858 0.88079708 0.01798621 0.04742587 0.50000000
-0.50000000 0.95257413 0.88079708 0.11920292 0.01798621 0.26894142 0.26894142 0.04742587 0.11920292 0.01798621 0.01798621 0.98201379 0.04742587 0.01798621 0.99330715 0.26894142 0.11920292 0.00669285 0.04742587 0.04742587
-0.50000000 0.50000000 0.88079708 0.04742587 0.04742587 0.11920292 0.04742587 0.04742587 0.04742587 0.95257413 0.50000000 0.11920292 0.26894142 0.04742587 0.98201379 0.11920292 0.73105858 0.01798621 0.04742587 0.88079708
-0.11920292 0.11920292 0.99908895 0.50000000 0.01798621 0.26894142 0.26894142 0.11920292 0.26894142 0.00669285 0.00669285 0.26894142 0.04742587 0.01798621 0.04742587 0.88079708 0.26894142 0.00669285 0.04742587 0.01798621
-0.04742587 0.04742587 0.04742587 0.00669285 0.01798621 0.04742587 0.04742587 0.01798621 0.73105858 0.11920292 0.11920292 0.04742587 0.11920292 0.95257413 0.01798621 0.04742587 0.04742587 0.73105858 0.99987661 0.11920292
-0.26894142 0.04742587 0.26894142 0.11920292 0.01798621 0.04742587 0.04742587 0.99908895 0.04742587 0.00669285 0.00669285 0.04742587 0.01798621 0.01798621 0.04742587 0.73105858 0.11920292 0.01798621 0.01798621 0.01798621
-0.50000000 0.11920292 0.26894142 0.11920292 0.11920292 0.26894142 0.11920292 0.11920292 0.11920292 0.04742587 0.04742587 0.26894142 0.11920292 0.01798621 0.11920292 0.99330715 0.99330715 0.01798621 0.04742587 0.11920292
-0.26894142 0.11920292 0.26894142 0.11920292 0.11920292 0.11920292 0.11920292 0.11920292 0.04742587 0.11920292 0.04742587 0.11920292 0.11920292 0.04742587 0.11920292 0.98201379 0.99752738 0.01798621 0.04742587 0.11920292
-0.50000000 0.50000000 0.04742587 0.01798621 0.11920292 0.04742587 0.04742587 0.01798621 0.01798621 0.99330715 0.50000000 0.11920292 0.50000000 0.11920292 0.88079708 0.11920292 0.50000000 0.01798621 0.04742587 0.95257413
-0.11920292 0.26894142 0.26894142 0.73105858 0.00669285 0.73105858 0.99752738 0.04742587 0.26894142 0.01798621 0.01798621 0.50000000 0.04742587 0.01798621 0.11920292 0.26894142 0.11920292 0.01798621 0.04742587 0.04742587
-0.99330715 0.04742587 0.11920292 0.04742587 0.11920292 0.11920292 0.11920292 0.88079708 0.04742587 0.11920292 0.11920292 0.11920292 0.11920292 0.04742587 0.11920292 0.50000000 0.26894142 0.01798621 0.04742587 0.50000000
-0.11920292 0.04742587 0.01798621 0.01798621 0.11920292 0.11920292 0.04742587 0.01798621 0.04742587 0.88079708 0.95257413 0.04742587 0.99908895 0.26894142 0.01798621 0.04742587 0.11920292 0.04742587 0.11920292 0.50000000
-0.11920292 0.04742587 0.01798621 0.01798621 0.11920292 0.04742587 0.01798621 0.01798621 0.04742587 0.88079708 0.98201379 0.04742587 0.99330715 0.26894142 0.01798621 0.04742587 0.11920292 0.04742587 0.11920292 0.50000000
-0.11920292 0.88079708 0.50000000 0.99330715 0.01798621 0.26894142 0.88079708 0.04742587 0.11920292 0.11920292 0.26894142 0.26894142 0.11920292 0.04742587 0.04742587 0.26894142 0.11920292 0.01798621 0.04742587 0.26894142
-0.73105858 0.04742587 0.04742587 0.04742587 0.11920292 0.11920292 0.11920292 0.04742587 0.04742587 0.26894142 0.95257413 0.11920292 0.50000000 0.11920292 0.95257413 0.50000000 0.73105858 0.04742587 0.04742587 0.26894142
-0.26894142 0.04742587 0.11920292 0.11920292 0.04742587 0.11920292 0.11920292 0.04742587 0.04742587 0.50000000 0.04742587 0.11920292 0.04742587 0.01798621 0.99908895 0.73105858 0.26894142 0.01798621 0.04742587 0.11920292
-0.26894142 0.11920292 0.50000000 0.98201379 0.99330715 0.11920292 0.26894142 0.50000000 0.11920292 0.04742587 0.04742587 0.11920292 0.04742587 0.01798621 0.11920292 0.88079708 0.26894142 0.01798621 0.04742587 0.04742587
-0.11920292 0.11920292 0.26894142 0.98201379 0.04742587 0.11920292 0.26894142 0.11920292 0.11920292 0.04742587 0.04742587 0.11920292 0.04742587 0.01798621 0.99752738 0.26894142 0.73105858 0.01798621 0.04742587 0.04742587
-0.26894142 0.11920292 0.26894142 0.95257413 0.04742587 0.26894142 0.88079708 0.11920292 0.11920292 0.04742587 0.01798621 0.26894142 0.04742587 0.01798621 0.98201379 0.88079708 0.26894142 0.01798621 0.04742587 0.04742587
-0.98201379 0.11920292 0.73105858 0.11920292 0.11920292 0.11920292 0.11920292 0.88079708 0.11920292 0.04742587 0.04742587 0.26894142 0.11920292 0.04742587 0.11920292 0.88079708 0.26894142 0.04742587 0.04742587 0.11920292
-0.26894142 0.04742587 0.11920292 0.11920292 0.04742587 0.11920292 0.11920292 0.04742587 0.04742587 0.04742587 0.04742587 0.11920292 0.04742587 0.01798621 0.99966465 0.26894142 0.11920292 0.01798621 0.04742587 0.04742587
-0.26894142 0.26894142 0.26894142 0.73105858 0.04742587 0.73105858 0.99330715 0.11920292 0.26894142 0.04742587 0.04742587 0.50000000 0.11920292 0.04742587 0.26894142 0.26894142 0.26894142 0.04742587 0.11920292 0.11920292
-0.26894142 0.26894142 0.26894142 0.73105858 0.11920292 0.73105858 0.98201379 0.11920292 0.26894142 0.11920292 0.11920292 0.50000000 0.11920292 0.11920292 0.26894142 0.26894142 0.26894142 0.11920292 0.11920292 0.11920292
-0.95257413 0.26894142 0.26894142 0.26894142 0.26894142 0.26894142 0.26894142 0.50000000 0.26894142 0.26894142 0.26894142 0.26894142 0.26894142 0.11920292 0.26894142 0.50000000 0.50000000 0.11920292 0.26894142 0.26894142
-0.50000000 0.11920292 0.26894142 0.26894142 0.11920292 0.26894142 0.11920292 0.98201379 0.11920292 0.11920292 0.11920292 0.26894142 0.11920292 0.11920292 0.11920292 0.26894142 0.26894142 0.11920292 0.11920292 0.11920292
-0.11920292 0.11920292 0.01798621 0.01798621 0.26894142 0.11920292 0.04742587 0.01798621 0.04742587 0.88079708 0.98201379 0.04742587 0.88079708 0.50000000 0.04742587 0.04742587 0.26894142 0.11920292 0.26894142 0.73105858
-0.98201379 0.11920292 0.11920292 0.11920292 0.50000000 0.26894142 0.26894142 0.50000000 0.11920292 0.26894142 0.11920292 0.26894142 0.26894142 0.11920292 0.26894142 0.73105858 0.50000000 0.04742587 0.11920292 0.50000000
-0.98201379 0.11920292 0.11920292 0.11920292 0.50000000 0.26894142 0.26894142 0.50000000 0.11920292 0.26894142 0.11920292 0.26894142 0.26894142 0.11920292 0.26894142 0.73105858 0.50000000 0.04742587 0.11920292 0.50000000
-0.26894142 0.11920292 0.11920292 0.11920292 0.04742587 0.26894142 0.26894142 0.11920292 0.11920292 0.04742587 0.04742587 0.26894142 0.04742587 0.01798621 0.99966465 0.26894142 0.26894142 0.01798621 0.04742587 0.04742587
-0.11920292 0.99752738 0.26894142 0.11920292 0.01798621 0.73105858 0.50000000 0.04742587 0.50000000 0.04742587 0.11920292 0.88079708 0.11920292 0.04742587 0.11920292 0.26894142 0.26894142 0.04742587 0.11920292 0.04742587
-0.11920292 0.11920292 0.01798621 0.01798621 0.26894142 0.11920292 0.04742587 0.01798621 0.04742587 0.88079708 0.98201379 0.04742587 0.88079708 0.50000000 0.04742587 0.04742587 0.26894142 0.11920292 0.26894142 0.73105858
-0.73105858 0.26894142 0.73105858 0.50000000 0.26894142 0.50000000 0.50000000 0.50000000 0.26894142 0.04742587 0.04742587 0.50000000 0.11920292 0.04742587 0.26894142 0.98201379 0.88079708 0.04742587 0.11920292 0.11920292
-0.11920292 0.04742587 0.04742587 0.01798621 0.04742587 0.01798621 0.01798621 0.04742587 0.26894142 0.50000000 0.50000000 0.04742587 0.50000000 0.99908895 0.01798621 0.04742587 0.11920292 0.73105858 0.95257413 0.26894142
-0.11920292 0.11920292 0.01798621 0.01798621 0.26894142 0.11920292 0.04742587 0.01798621 0.04742587 0.88079708 0.98201379 0.04742587 0.88079708 0.50000000 0.04742587 0.04742587 0.26894142 0.11920292 0.26894142 0.73105858
+++ /dev/null
->jnetpred
------------HHHHHHHHHH-------HHHHHHHHHHHHHHH-------------EE----HHHHHHHHH-
-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEEE---
-H-HHEE----EE----EEEE--------HHHHH--HHH-----EEEEE---------E----------HHHH
-HHHHHHHHHHHH------------------------------HHHHH---------------------
->JNETSOL25
---------B-BB-BBB--BB--B-B--B--BB-BB--B-BBBBBBBBBB--BBBBB-BBBBBB--BB-BB--
--BB---BBBB-B-B---B--BB-----B--BB--B--BB---B-BBB--BB-BBB-BBBBBB-BB---B---
-B--B-B------B--BB-BBB---BB-BBB-BBBBBBBBBBBBBBBBBBBBBBB-B-----BBBBB-B-B--
----B-BBBBBBBBBBBBBBB---BB-B--B--B-BBB--B-BBBBBB-BB------BB--B-B-B-BBBBBB
-BBBBBBBBBB-BBB-B--------B--BBBBB----BBBBBBBBBBB-BB---BB--B-BBB--B---
->JNETSOL5
---------------BB--B--------B--BB--B------BB-BB------B--B-BB------B---B--
----------B-----------------B--BB--B-------B------B--BB--BB-BBB--B---B---
------B----------B---B-------B--BB-BB-B---B-BB--BB--B---------BB--B-B----
----B-BBB-B-BB--BBB-B-------------------B-B-BB-B-B------------------B-B-B
--B---B---B-B-----------------------------B--BBB---------------------
->JNETSOL0
-------------------B-------------------------B--------------------B------
----------------------------------------------------------B-B----B-------
--------------------------------------B---B--B--B------------------------
------B-----------------------------------------------------------------B
---------------------------------------------------------------------
->JNETHMM
------------HHHHHHHHHH-------HHHHHHHHHHHHHHH--------HHH---E----HHHHHHHHH-
-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEEEEE---
----EEE----EE----EEEE--------HHHHH--HH------EEEEEEEE-----------------HHHH
-HHHHHHHHHHHH-----------------------------HHHHHH---------------------
->JNETPSSM
------------HHHHHHHHHH-------HHHHHHHHHH-----------------EEE----HHHHHHHHH-
-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEEE--H
-HHHHHHHE---EE---EEEE---------H----HHHHH----HHHHHH-------EEE----------HHH
-HHHHHHHHHHH-H-----------------------------HEEEE-----------------EE--
->QUERY
-SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDA
-YVPERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQL
-HRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLES
-WRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASG
-YFMVLIRAKLDSYSSFTTSPSEAVMREHAYSRAPTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL
->UniRef90_Q00028
------PPKATSPTALYQRLQAELGFPEGQAMLFAMEKWNEDMFSAIPVHVDLYTEIALLSTSVNEVVKAGLD
-SLPIPTEVDLNAHGSEPFPEVPALEDELETYVISAQRFYLSELRAREEHYSRLLRGYCVALLHYLYGSAKRQ
-LRGA---GSDSALMHKFKQVVRDRYYRETANLARLLYLHLYISVTREVSWRLHASQVVNQGIFVSLHYTWPQ
-RRKFECLFHPVLFNHGVVILENDPLEFNDLQRINYRRRELGLPLIRAGLIEEENLPLESEPTFSGKLPRTIG
-FLTHQIRTKMEAYSNAHPSTPLFPLAEHSYSRIDGRLSYGTTAEAMMDPPSPSA--------------
->UniRef90_Q8B635
------PIKASSPSSLIKNLLDELNFPEGPSLLSSMEKWNEDLFSCIPRFLEIYIENSILSTSVDEVIKNLDN
-SLNYDDVIDFQVHGPETFPKTPLLEEELENYVTSVQKYFLSELKAREVTYSFLLTKYCKALLLYLRYNTKSS
-IKG------NKDINQKFKQNVRERYYREVANIARLLYLHLYLSVTREVSWKLHADQVLLQSVFVSLSYSWSH
-RRQFECIFHPILFNHGIVNLENNPLTFKELQKINYRRHILGLPLIRAGLVEEDNQPLMIPPEFSSKLPRTIG
-FLTQQIRAKMEAYSDNHPVTPKFPRIEHSYAKPIDPINYGTTIEAMMDPPSPSA--------------
->UniRef90_Q9E205
------PPRVASPAVLYQQLINDLHFSEGPRIIALLETCNEDIFSCFPLNEDLYTDTIVFSTNPSDIIELETS
-ETPE--PINLITKG-CDLPSLPSTYTELPMYVENVQNTFFTELRVREKAYLRLLILYCKSLLRHLQGISRRS
-SVGARSQDCEHKYITQFKQSIRLRYYREVAKLARLLYLHLYITVTRQFSWRLFAQQSKYPDVFAAMKFMWLE
-NRQFTCAFHPILCNHGIVLLEGKPLSSQRLREVNYRRRQLGLPLVRCALIEEKGVPLVQRPEFSAHMPRSLG
-FLTHHIKAKLDVYSSKHSQEPGNVRVDHPYARNVNNINYGSSVEAMIVSPPSPS--------------
->UniRef90_Q88530
---LPSPE-AASPNLLYDRLILELDFAEGPSLLAKLERVNVDLFSCLPLNSHLYKHAKILSTCPREVLDAVYE
-NTWQYTALNLNEHGKSSIPPVPASKDDLPAYVTAVQEFYLEELEAREQIYAKLFFGYCRALIMHIIKSV--L
-NESRGVRVSDDYVQNKARWYISNNYYRDAVRIAKLLYLHLYLSTTEIVSQRLEAMQTSLQDLFVYLRCEWGQ
-GRQFWCIFQPMIYNHGVPMIEGRALTSLELGSSNYIRSELGLPLIRCELLEELESPVVFPPTFTATAPRSSG
-YLFHNIRAKMELYSNIHPSPQLSGLSDHTYVRTHVPVNYGTTVEVLLDASDPDS--------------
->UniRef90_B4XS08
-------------------------FPEASTILSTFELMNMDLFSCLPRNEDLYRNAALLSGSVTEVIEA--S
-EIPIDGEIDLNAHGSKQLPIPPSNEWEIPNYVEAVQQFFLSELRAREESYLKLFLGYCRAIVNYIKSAATRG
-VRGCRIMDRKSEANKRMRRMIADRYYREAARLAKVLYLHLYLSVAREISSRLCATQMQVQNVFVYMRYEWQQ
-YRQFTCLFHPIMFNHGVVLLNGEPLQAQKLREVNYIRFKLGLPVIRCGLVEEHDKPLVEEPRFYGNLPRSSG
-FLTELIRSKMEAYSELRPTSPSSISNDHTYAKQLDKVNFGSTREAILDTIDTEGP-------------
->UniRef90_P09265
----PSPPWVASPKILYQQLIRDLDFSEGPRLLSCLETWNEDLFSCFPINEDLYSDMMVLSPDPDDVI----S
-TVSTKDHVNLTTRGSVRLPSPPKQPTGLPAYVQEVQDSFTVELRAREEAYTKLLVTYCKSIIRYLQGTAKRT
-TIGLNIQNPDQKAYTQLRQSILLRYYREVASLARLLYLHLYLTVTREFSWRLYASQSAHPDVFAALKFTWTE
-RRQFTCAFHPVLCNHGIVLLEGKPLTASALREINYRRRELGLPLVRCGLVEENKSPLVQQPSFSVHLPRSVG
-FLTHHIKRKLDAYAVKHPQEPRHVRADHPYAKVVENRNYGSSIEAMILAP--PSPSE-----------
->UniRef90_Q2QBC8
-------------AALYNRLLEDLGFGDGPALCTILDSWNEDLFSGLPANPDLYRECRFLSTLPGDVVVWGDA
-HAPDRGPIDIRAHGSAPFPSLPARREGLPAYCEALTRFFHSELRAREESYRRVLANFCSALYRYLRASTRQL
-HRQAALKGRPRDLQEMLRAAVAERYYRETARLARVLFLHLYLFLVREILWAVYAEQVMRQDLFEGLRCDLEQ
-ARQLSCLFQPLLFVHGALSVGGEPVSPARLRELNHVRERLNLPLIRSAATEEPGAALTAAPALQTQRARSSG
-YFMTLIRVKLDAYSEWSAGSEGAVLREHAYSRRRERTNYGSSIEGLLEL-------------------
->UniRef90_Q90603
----------------YTRLLHELDFVEGPSILARLEKINVDLFSCFPHNKHLYEHAKILSVSPSEVLEELSK
-NTWTYTALNLNEHGEVALPMPPTTKADLPSYVDDIQNFYLGELEAREKSYATMFYGYCRALAEYIRQSAIKD
-LRDA--RVEDKNIGACSKARQYIAERYYREAFANVLYVHLYLSTTRDVSQRLEASQMGRQNIFVYLKCEWLQ
-ERHFHCLFQPVIFNHGVVIVEGRVLTAPELRAQNYIRSEFGLPLIRCKLVEEPDMPLISPPPFSGDAPRASV
-YLLQCIRSKLEVYSSHPPNPQLHVHKEHVHQKLESPPNYGTTVEALLMDSSD----------------
->UniRef90_O89246
---------------------HELDFTEGPSLLSRLEKLNVDLFSCFPINGHLYEHATLLSVSPSEVLDAASE
-EKWAYTAINLNEHCGMEVPRPPLTKDGLPVYVTEIQKFFSMELEAREKSYVTLLCGYCRALACYLRQGANEP
-SRCDMCVGGS----ETPRRSIAGAYYREAARFARLLYMHLYLSVTRDVSRRLEASQRKRQNLFAHLRCDWHQ
-LRHFQCLFQPVIFNHGVVIVEGRALTAAELRTQNYVRSELGLPVMRCELVEERGMPLTAPPAFLANAPRASA
-YLFQCIKSKLEVYSLMHPPRPRSSARGESGRAGKAGPSHGTIVKAMLRDSTHPGPAIADIAAAR----
->UniRef90_Q5PP87
-----------SPDALYQRLISDLAFDEGPALLGAMERWNEDLFSCLPGNEDLYARLVMLSASADEVAAQVRA
-PTADAS-VDLGVPGAEPMPRVPAVEEELPAYVAAVERFFVSTLRAREERYARLLDAYCRAVLRYLHAQARRD
--------------EGKLRQLVRGRYYRDVARLAPWLFLHLYVATARELSWRLHADQVVAQDVFMSLRYEWDQ
-ARQLTCLFHPVLFNHGVVLLSGAPVPAAQLRAVNHRRRELGLPLVRAGLIEEDGADLVEEPPFSAALPRAAG
-YLSHQVRIKMEAYS--------REYRDHTYCRPPSPVSYG----------------------------
->UniRef90_Q65819
-----------------ERMQAELGFPDGPALLRAMERWNEDLFSCLPTNADLYADAALLSADADAVVGAMYL
-AVPDAERLDLNAHANQPLPAPPASEEGLPEYVAGVQAHFLAELRAREERYAGLFLGYCRALLQHLRA----T
-AARGRGAAGAGAQADRLRQLVAARYYREASRLARLAFAHMYVATAREVSWRLHSQQSQAQGVFVSLYYAWPQ
-RRQFTCLFHPVLFNHGVVALEDGFLDAAELRRLNYRRRELGLPLVRAGLVEVEVGPLVEEPPFSGSLPRALG
-FLNYQVRAKMGAPAE--AGGRLAPEREHSYARPRGAINYGTTPEAMLRPPSPS---------------
->UniRef90_O56869
--RNPGPPALVSASFLAKNALTELQFADWDKIQHVLKTINIDIFSCVPVGENGLCNMDWFSLDTEKIWTLMDS
-GTPNVSPNLLITPGPP--PECIKTPEEAPAYFEAISNYFESVLAAREAEYAKLLAEYAKSLAKYIRHKSQKV
-GR--GLRALELDTEEAKKRLMKSEYYKGIEKLLIIFLVHLVLNACRDVARIIWVQQRDSSSVLQKVTYRWES
--QQLHCIFQPLLVSPGPVFLDNDPLPLQTLQHVNYVRYLLGVPVLRFSMIEESPSAQYIP----YDKTAPSA
-YDVLATIAR----TCLTSSGCSRASHDHTYARDNEKPNYSSSRIVLLADSALDTP-------------
+++ /dev/null
->jnetpred
------------HHHHHHHHHH-------HHHHHHHHHHHHHHH-------------EE----HHHHHHHHH-
-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEEE---
-H-HHEE----EE----EEEE--------HHHHH--HHH-----EEEEE---------E----------HHHH
-HHHHHHHHHHHH------------------------------HHHHH---------------------
->JNETSOL25
---------B-BB-BBB--BB--B-B--B--BB-BB--B-BBBBBBBBBB--BBBBB-BBBBBB--BB-BB--
--BB---BBBB-B-B---B--BB-----B--BB--B--BB---B-BBB--BB-BBB-BBBBBB-BB---B---
-B--B-B------B--BB-BBB---BB-BBB-BBBBBBBBBBBBBBBBBBBBBBB-B-----BBBBB-B-B--
----B-BBBBBBBBBBBBBBB---BB-B--B--B-BBB--B-BBBBBB-BB------BB--B-B-B-BBBBBB
-BBBBBBBBBB-BBB-B--------B--BBBBB----BBBBBBBBBBB-BB---BB--B-BBB--B---
->JNETSOL5
---------------BB--B--------B--BB--B------BB-BB------B--B-BB------B---B--
----------B-----------------B--BB--B-------B------B--BB--BB-BBB--B---B---
------B----------B---B-------B--BB-BB-B---B-BB--BB--B---------BB--B-B----
----B-BBB-B-BB--BBB-B-------------------B-B-BB-B-B------------------B-B-B
--B---B---B-B-----------------------------B--BBB---------------------
->JNETSOL0
-------------------B-------------------------B--------------------B------
----------------------------------------------------------B-B----B-------
--------------------------------------B---B--B--B------------------------
------B-----------------------------------------------------------------B
---------------------------------------------------------------------
->JNETHMM
------------HHHHHHHHHH-------HHHHHHHHHHHHHHH--------HHH---E----HHHHHHHHH-
-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEEEEE---
----EEE----EE----EEEE--------HHHHH--HH------EEEEEEEE-----------------HHHH
-HHHHHHHHHHHH-----------------------------HHHHHH---------------------
->JNETPSSM
------------HHHHHHHHHH-------HHHHHHHHHH-----------------EEE----HHHHHHHHH-
-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEEE--H
-HHHHHHHE---EE---EEEE---------H----HHHHH----HHHHHH-------EEE----------HHH
-HHHHHHHHHHH-H-----------------------------HEEEE-----------------EE--
->QUERY
-SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDA
-YVPERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQL
-HRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLES
-WRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASG
-YFMVLIRAKLDSYSSFTTSPSEAVMREHAYSRAPTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL
->UniRef90_Q00028
------PPKATSPTALYQRLQAELGFPEGQAMLFAMEKWNEDMFSAIPVHVDLYTEIALLSTSVNEVVKAGLD
-SLPIPTEVDLNAHGSEPFPEVPALEDELETYVISAQRFYLSELRAREEHYSRLLRGYCVALLHYLYGSAKRQ
-LRGA---GSDSALMHKFKQVVRDRYYRETANLARLLYLHLYISVTREVSWRLHASQVVNQGIFVSLHYTWPQ
-RRKFECLFHPVLFNHGVVILENDPLEFNDLQRINYRRRELGLPLIRAGLIEEENLPLESEPTFSGKLPRTIG
-FLTHQIRTKMEAYSNAHPSTPLFPLAEHSYSRIDGRLSYGTTAEAMMDPPSPSA--------------
->UniRef90_Q8B635
------PIKASSPSSLIKNLLDELNFPEGPSLLSSMEKWNEDLFSCIPRFLEIYIENSILSTSVDEVIKNLDN
-SLNYDDVIDFQVHGPETFPKTPLLEEELENYVTSVQKYFLSELKAREVTYSFLLTKYCKALLLYLRYNTKSS
-IKG------NKDINQKFKQNVRERYYREVANIARLLYLHLYLSVTREVSWKLHADQVLLQSVFVSLSYSWSH
-RRQFECIFHPILFNHGIVNLENNPLTFKELQKINYRRHILGLPLIRAGLVEEDNQPLMIPPEFSSKLPRTIG
-FLTQQIRAKMEAYSDNHPVTPKFPRIEHSYAKPIDPINYGTTIEAMMDPPSPSA--------------
->UniRef90_Q9E205
------PPRVASPAVLYQQLINDLHFSEGPRIIALLETCNEDIFSCFPLNEDLYTDTIVFSTNPSDIIELETS
-ETPE--PINLITKG-CDLPSLPSTYTELPMYVENVQNTFFTELRVREKAYLRLLILYCKSLLRHLQGISRRS
-SVGARSQDCEHKYITQFKQSIRLRYYREVAKLARLLYLHLYITVTRQFSWRLFAQQSKYPDVFAAMKFMWLE
-NRQFTCAFHPILCNHGIVLLEGKPLSSQRLREVNYRRRQLGLPLVRCALIEEKGVPLVQRPEFSAHMPRSLG
-FLTHHIKAKLDVYSSKHSQEPGNVRVDHPYARNVNNINYGSSVEAMIVSPPSPS--------------
->UniRef90_Q88530
---LPSPE-AASPNLLYDRLILELDFAEGPSLLAKLERVNVDLFSCLPLNSHLYKHAKILSTCPREVLDAVYE
-NTWQYTALNLNEHGKSSIPPVPASKDDLPAYVTAVQEFYLEELEAREQIYAKLFFGYCRALIMHIIKSV--L
-NESRGVRVSDDYVQNKARWYISNNYYRDAVRIAKLLYLHLYLSTTEIVSQRLEAMQTSLQDLFVYLRCEWGQ
-GRQFWCIFQPMIYNHGVPMIEGRALTSLELGSSNYIRSELGLPLIRCELLEELESPVVFPPTFTATAPRSSG
-YLFHNIRAKMELYSNIHPSPQLSGLSDHTYVRTHVPVNYGTTVEVLLDASDPDS--------------
->UniRef90_B4XS08
-------------------------FPEASTILSTFELMNMDLFSCLPRNEDLYRNAALLSGSVTEVIEA--S
-EIPIDGEIDLNAHGSKQLPIPPSNEWEIPNYVEAVQQFFLSELRAREESYLKLFLGYCRAIVNYIKSAATRG
-VRGCRIMDRKSEANKRMRRMIADRYYREAARLAKVLYLHLYLSVAREISSRLCATQMQVQNVFVYMRYEWQQ
-YRQFTCLFHPIMFNHGVVLLNGEPLQAQKLREVNYIRFKLGLPVIRCGLVEEHDKPLVEEPRFYGNLPRSSG
-FLTELIRSKMEAYSELRPTSPSSISNDHTYAKQLDKVNFGSTREAILDTIDTEGP-------------
->UniRef90_P09265
----PSPPWVASPKILYQQLIRDLDFSEGPRLLSCLETWNEDLFSCFPINEDLYSDMMVLSPDPDDVI----S
-TVSTKDHVNLTTRGSVRLPSPPKQPTGLPAYVQEVQDSFTVELRAREEAYTKLLVTYCKSIIRYLQGTAKRT
-TIGLNIQNPDQKAYTQLRQSILLRYYREVASLARLLYLHLYLTVTREFSWRLYASQSAHPDVFAALKFTWTE
-RRQFTCAFHPVLCNHGIVLLEGKPLTASALREINYRRRELGLPLVRCGLVEENKSPLVQQPSFSVHLPRSVG
-FLTHHIKRKLDAYAVKHPQEPRHVRADHPYAKVVENRNYGSSIEAMILAP--PSPSE-----------
->UniRef90_Q2QBC8
-------------AALYNRLLEDLGFGDGPALCTILDSWNEDLFSGLPANPDLYRECRFLSTLPGDVVVWGDA
-HAPDRGPIDIRAHGSAPFPSLPARREGLPAYCEALTRFFHSELRAREESYRRVLANFCSALYRYLRASTRQL
-HRQAALKGRPRDLQEMLRAAVAERYYRETARLARVLFLHLYLFLVREILWAVYAEQVMRQDLFEGLRCDLEQ
-ARQLSCLFQPLLFVHGALSVGGEPVSPARLRELNHVRERLNLPLIRSAATEEPGAALTAAPALQTQRARSSG
-YFMTLIRVKLDAYSEWSAGSEGAVLREHAYSRRRERTNYGSSIEGLLEL-------------------
->UniRef90_Q90603
----------------YTRLLHELDFVEGPSILARLEKINVDLFSCFPHNKHLYEHAKILSVSPSEVLEELSK
-NTWTYTALNLNEHGEVALPMPPTTKADLPSYVDDIQNFYLGELEAREKSYATMFYGYCRALAEYIRQSAIKD
-LRDA--RVEDKNIGACSKARQYIAERYYREAFANVLYVHLYLSTTRDVSQRLEASQMGRQNIFVYLKCEWLQ
-ERHFHCLFQPVIFNHGVVIVEGRVLTAPELRAQNYIRSEFGLPLIRCKLVEEPDMPLISPPPFSGDAPRASV
-YLLQCIRSKLEVYSSHPPNPQLHVHKEHVHQKLESPPNYGTTVEALLMDSSD----------------
->UniRef90_O89246
---------------------HELDFTEGPSLLSRLEKLNVDLFSCFPINGHLYEHATLLSVSPSEVLDAASE
-EKWAYTAINLNEHCGMEVPRPPLTKDGLPVYVTEIQKFFSMELEAREKSYVTLLCGYCRALACYLRQGANEP
-SRCDMCVGGS----ETPRRSIAGAYYREAARFARLLYMHLYLSVTRDVSRRLEASQRKRQNLFAHLRCDWHQ
-LRHFQCLFQPVIFNHGVVIVEGRALTAAELRTQNYVRSELGLPVMRCELVEERGMPLTAPPAFLANAPRASA
-YLFQCIKSKLEVYSLMHPPRPRSSARGESGRAGKAGPSHGTIVKAMLRDSTHPGPAIADIAAAR----
->UniRef90_Q5PP87
-----------SPDALYQRLISDLAFDEGPALLGAMERWNEDLFSCLPGNEDLYARLVMLSASADEVAAQVRA
-PTADAS-VDLGVPGAEPMPRVPAVEEELPAYVAAVERFFVSTLRAREERYARLLDAYCRAVLRYLHAQARRD
--------------EGKLRQLVRGRYYRDVARLAPWLFLHLYVATARELSWRLHADQVVAQDVFMSLRYEWDQ
-ARQLTCLFHPVLFNHGVVLLSGAPVPAAQLRAVNHRRRELGLPLVRAGLIEEDGADLVEEPPFSAALPRAAG
-YLSHQVRIKMEAYS--------REYRDHTYCRPPSPVSYG----------------------------
->UniRef90_Q65819
-----------------ERMQAELGFPDGPALLRAMERWNEDLFSCLPTNADLYADAALLSADADAVVGAMYL
-AVPDAERLDLNAHANQPLPAPPASEEGLPEYVAGVQAHFLAELRAREERYAGLFLGYCRALLQHLRA----T
-AARGRGAAGAGAQADRLRQLVAARYYREASRLARLAFAHMYVATAREVSWRLHSQQSQAQGVFVSLYYAWPQ
-RRQFTCLFHPVLFNHGVVALEDGFLDAAELRRLNYRRRELGLPLVRAGLVEVEVGPLVEEPPFSGSLPRALG
-FLNYQVRAKMGAPAE--AGGRLAPEREHSYARPRGAINYGTTPEAMLRPPSPS---------------
->UniRef90_O56869
--RNPGPPALVSASFLAKNALTELQFADWDKIQHVLKTINIDIFSCVPVGENGLCNMDWFSLDTEKIWTLMDS
-GTPNVSPNLLITPGPP--PECIKTPEEAPAYFEAISNYFESVLAAREAEYAKLLAEYAKSLAKYIRHKSQKV
-GR--GLRALELDTEEAKKRLMKSEYYKGIEKLLIIFLVHLVLNACRDVARIIWVQQRDSSSVLQKVTYRWES
--QQLHCIFQPLLVSPGPVFLDNDPLPLQTLQHVNYVRYLLGVPVLRFSMIEESPSAQYIP----YDKTAPSA
-YDVLATIAR----TCLTSSGCSRASHDHTYARDNEKPNYSSSRIVLLADSALDTP-------------
####################################################################################################
-../jpred.pl -seq d16vpa_.fas -o res_d16vpa_ -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
-../jpred.pl -seq SCOP175B_nr.seq -o res_SCOP175B_nr -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
-../jpred.pl -seq T-state1.fas -o res_T-state1.res -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
-../jpred.pl -seq T-state2.fas -o res_T-state2.res -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -seq -in d16vpa_.fas -outfile d16vpa_.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -seq -in d1b3aa_.fas -outfile d1b3aa_.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -seq -in T-state1.fas -outfile res_T-state1.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -seq -in T-state2.fas -outfile res_T-state2.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
-./webscripts/fasta2concise < d16vpa_.res.align > d16vpa_.res.align.csv
+../jpred.pl -in alignment.msf -outfile alignment_from_msf.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -in alignment.blc -outfile alignment_from_blc.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
+../jpred.pl -in alignment.fasta -outfile alignment_from_fasta.res.fasta -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug