enum constants for Glyph types.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235 be28352e-c001-0410-b1a7-c7978e42abec

diff --git a/src/org/vamsas/objects/utils/GlyphDictionary.java b/src/org/vamsas/objects/utils/GlyphDictionary.java
new file mode 100644 (file)
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+++ b/src/org/vamsas/objects/utils/GlyphDictionary.java
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+package org.vamsas.objects.utils;\r
+\r
+/**\r
+ * dict attribute values for glyph symbol sets found in org.vamsas.objects.core.AnnotationElement\r
+ * TODO: add validators and multilength symbols.\r
+ * @author JimP\r
+ *\r
+ */\r
+public class GlyphDictionary {\r
+  /**\r
+   * standard H, E, or C three state secondary structure assignment.\r
+   */\r
+  static final public String PROTEIN_SS_3STATE="aasecstr_3"; // HE, blank or C\r
+  /**\r
+   * default glyph type attribute indicates a UTF8 character\r
+   */\r
+  static final public String DEFAULT="utf8";\r
+  /**\r
+   * kyte and doolittle hydrophobicity\r
+   * TODO: specify this glyph set.\r
+   */\r
+  static final public String PROTEIN_HD_HYDRO="kd_hydrophobicity";\r
+}\r