conf/Executable.properties and compilebin.sh updated for linux.

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
old mode 100644 (file)
new mode 100755 (executable)
index 441cdb0..87ce823
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -84,3 +84,12 @@ make
 echo "DONE"
 cd ..
 
+echo "Compiling Vienna ..."
+cd ViennaRNA
+chmod +x ./configure
+./configure
+make clean
+make
+echo "DONE"
+cd ..
+

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 9641fb9..333477e 100644 (file)
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -197,7 +197,7 @@ aacon.presets.file=conf/settings/AAConPresets.xml
 #aacon.cluster.settings=-q 64bit-pri.q -pe smp 4 -l ram=1700M -l h_cpu=24:00:00\r
 \r
 #####                                  RNAALIFOLD CONFIGURATION                         ######\r
-# just the windows binary at the moment\r
 local.rnaalifold.bin.windows=binaries/windows/ViennaRNA/RNAalifold.exe\r
+local.rnaalifold.bin=binaries/src/ViennaRNA/Progs/RNAalifold\r
 rnaalifold.parameters.file=conf/settings/RNAalifoldParameters.xml\r
 \r