public class phylo2graphics {
- public static void main(final String[] args) {
- try {
- Configuration config = new Configuration();
- // Could also read a configuration file with:
- // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
- config.putDisplayColors(TreeColorSet.BACKGROUND, new Color(255, 255, 255));
- config.putDisplayColors(TreeColorSet.BRANCH, new Color(0, 0, 0));
- config.putDisplayColors(TreeColorSet.TAXONOMY, new Color(0, 0, 0));
- config.setPhylogenyGraphicsType(
- Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR);
-
- AptxUtil.writePhylogenyToGraphicsFile(new File("my_tree.xml"),
- new File("my_tree.png"),
- 800, // width
- 1000, // height
- GraphicsExportType.PNG,
- config);
-
-
- // If the tree 'phy' already exists, can also use this:
- // AptxUtil.writePhylogenyToGraphicsFile(phy,
- // new File("out.png"),
- // 800,
- // 1000,
- // GraphicsExportType.PNG,
- // config);
-
+ public static void main( final String[] args ) {
+ try {
+ final Configuration config = new Configuration();
+ // Could also read a configuration file with:
+ // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
+ config.putDisplayColors( TreeColorSet.BACKGROUND, new Color( 255, 255, 255 ) );
+ config.putDisplayColors( TreeColorSet.BRANCH, new Color( 0, 0, 0 ) );
+ config.putDisplayColors( TreeColorSet.TAXONOMY, new Color( 0, 0, 0 ) );
+ config.setPhylogenyGraphicsType( Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR );
+ AptxUtil.writePhylogenyToGraphicsFile( new File( "/home/czmasek/tol_117_TEST.xml" ),
+ new File( "/home/czmasek/tol_117_TEST_.png" ),
+ 1000,
+ 1000,
+ GraphicsExportType.PNG,
+ config );
+ // If the tree 'phy' already exists, can also use this:
+ AptxUtil.writePhylogenyToGraphicsFile( phy,
+ new File( "/home/czmasek/tol_117_TEST_.png" ),
+ 1000,
+ 1000,
+ GraphicsExportType.PNG,
+ config );
}
- catch (IOException e) {
- e.printStackTrace();
+ catch ( final IOException e ) {
+ e.printStackTrace();
}
}
}