Revised exercise 1 - launching Jalview in line with 2.11.1.2 changes

diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex
index c8560c8..7907819 100644 (file)
--- a/TheJalviewTutorial.tex
+++ b/TheJalviewTutorial.tex
@@ -328,13 +328,13 @@ Preferences...} menu on the desktop. A `Preference'
 dialog box opens, untick the box adjacent to the `Open file' entry in the
 `Visual' preferences tab.
 Click {\sl OK} to save the preferences.}
-%%\exstep{Launch another Jalview workbench from the web site by clicking on the
-%%The example alignment should not be loaded as Jalview starts up.}
+%%\exstep{Quit Jalview and open it again to check that the
+%%The example alignment is not loaded wehn Jalview starts up.}
 \exstep{To reload the original demo file select the
 {\em File$\Rightarrow$ From URL} entry in the Desktop menu. Click on
 the URL history button (a downward arrow on the right hand side of the dialog
-box) to view the files, select exampleFile\_2\_7.jar
-(\url{http://www.jalview.org/examples/exampleFile_2_7.jar}) 
+box) to view the files, select exampleFile\_2\_7.jvp
+(shown as \url{https://www.jalview.org/examples/exampleFile_2_7.jvp}) 
 then click {\sl OK}.}
 \begin{list}{$\circ$}{\newline
   \newline {\bf
@@ -344,8 +344,6 @@ then click {\sl OK}.}
 to the {\sl Tools $\Rightarrow$
 Preferences...} menu on the desktop. Then tick the `Open file' entry of `Visual'
 preferences tab, type in the URL of the sequence you want to load.}
-%%\item {You may want to move the jalview.jnlp file from your {\bf downloads} to another folder.}
-%%\item {Opening Jalview via the jnlp file will also allow Jalview to be launched offline.}
 \end{list}
 
 {\bf See the video at: