PROT-1 Rename website directory into webapp (standard maven dir name)

diff --git a/src/main/website/AllReports.jsp b/src/main/weapp/AllReports.jsp
similarity index 100%
rename from src/main/website/AllReports.jsp
rename to src/main/weapp/AllReports.jsp

diff --git a/src/main/website/Index.jsp b/src/main/weapp/Index.jsp
similarity index 100%
rename from src/main/website/Index.jsp
rename to src/main/weapp/Index.jsp

diff --git a/src/main/website/PrintResult.jsp b/src/main/weapp/PrintResult.jsp
similarity index 100%
rename from src/main/website/PrintResult.jsp
rename to src/main/weapp/PrintResult.jsp

diff --git a/src/main/website/QueryJobsByDate.jsp b/src/main/weapp/QueryJobsByDate.jsp
similarity index 100%
rename from src/main/website/QueryJobsByDate.jsp
rename to src/main/weapp/QueryJobsByDate.jsp

diff --git a/src/main/website/QueryLogInfo.jsp b/src/main/weapp/QueryLogInfo.jsp
similarity index 100%
rename from src/main/website/QueryLogInfo.jsp
rename to src/main/weapp/QueryLogInfo.jsp

diff --git a/src/main/website/QuerySequenceProtein.jsp b/src/main/weapp/QuerySequenceProtein.jsp
similarity index 100%
rename from src/main/website/QuerySequenceProtein.jsp
rename to src/main/weapp/QuerySequenceProtein.jsp

diff --git a/src/main/website/QueryTimeExecition.jsp b/src/main/weapp/QueryTimeExecition.jsp
similarity index 100%
rename from src/main/website/QueryTimeExecition.jsp
rename to src/main/weapp/QueryTimeExecition.jsp

diff --git a/src/main/website/ReportJobsByDate.jsp b/src/main/weapp/ReportJobsByDate.jsp
similarity index 100%
rename from src/main/website/ReportJobsByDate.jsp
rename to src/main/weapp/ReportJobsByDate.jsp

diff --git a/src/main/website/ReportLogInfo.jsp b/src/main/weapp/ReportLogInfo.jsp
similarity index 100%
rename from src/main/website/ReportLogInfo.jsp
rename to src/main/weapp/ReportLogInfo.jsp

diff --git a/src/main/website/ReportSequenceProtein.jsp b/src/main/weapp/ReportSequenceProtein.jsp
similarity index 100%
rename from src/main/website/ReportSequenceProtein.jsp
rename to src/main/weapp/ReportSequenceProtein.jsp

diff --git a/src/main/website/ReportTimeExecution.jsp b/src/main/weapp/ReportTimeExecution.jsp
similarity index 100%
rename from src/main/website/ReportTimeExecution.jsp
rename to src/main/weapp/ReportTimeExecution.jsp

diff --git a/src/main/website/StatisticsProtein.jsp b/src/main/weapp/StatisticsProtein.jsp
similarity index 100%
rename from src/main/website/StatisticsProtein.jsp
rename to src/main/weapp/StatisticsProtein.jsp

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNativeConnector.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraNewTableWriter.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraReader.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraReader.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraReader.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraReader.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/CassandraWriter.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraWriter.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/CassandraWriter.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/CassandraWriter.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/DataBase.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/DataBase.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/DataBase.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/DataBase.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader$1.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader$1.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader$1.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader$1.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaReader.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaReader.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/FastaSequence.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaSequence.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/FastaSequence.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/FastaSequence.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParser.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParser.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParser.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParser.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserHTTP.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/JpredParserLocalFile.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/Pair.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/Pair.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/Pair.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/Pair.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/StructureJobLog.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureJobLog.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/StructureJobLog.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureJobLog.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/StructureProteinPrediction.class

diff --git a/src/main/website/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class b/src/main/weapp/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class
rename to src/main/weapp/WEB-INF/classes/compbio/cassandra/readers/CassandraReaderExecutionTime.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/Job.class b/src/main/weapp/WEB-INF/classes/compbio/engine/Job.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/Job.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/Job.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/JpredJob.class b/src/main/weapp/WEB-INF/classes/compbio/engine/JpredJob.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/JpredJob.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/JpredJob.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class b/src/main/weapp/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/ProteoCachePropertyHelperManager.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/Archive.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/Archive.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/archive/Archive.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/Archive.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchiveManager.class

diff --git a/src/main/website/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class b/src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class
rename to src/main/weapp/WEB-INF/classes/compbio/engine/archive/ArchivedJob.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$1.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$1.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$1.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$1.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$2.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$2.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$2.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$2.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$3.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$3.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener$3.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener$3.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ContextListener.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ContextListener.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ContextListener.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/DetailList.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/DetailList.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/DetailList.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/DetailList.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletJobsByDate.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletLogInfo.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletLogInfo.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletLogInfo.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletLogInfo.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletSequenceProtein.class

diff --git a/src/main/website/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class b/src/main/weapp/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class
rename to src/main/weapp/WEB-INF/classes/compbio/listeners/ServletTimeExecution.class

diff --git a/src/main/website/WEB-INF/classes/compbio/statistic/CassandraRequester.class b/src/main/weapp/WEB-INF/classes/compbio/statistic/CassandraRequester.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/statistic/CassandraRequester.class
rename to src/main/weapp/WEB-INF/classes/compbio/statistic/CassandraRequester.class

diff --git a/src/main/website/WEB-INF/classes/compbio/statistic/StatisticsProt.class b/src/main/weapp/WEB-INF/classes/compbio/statistic/StatisticsProt.class
similarity index 100%
rename from src/main/website/WEB-INF/classes/compbio/statistic/StatisticsProt.class
rename to src/main/weapp/WEB-INF/classes/compbio/statistic/StatisticsProt.class

diff --git a/src/main/website/WEB-INF/classes/lib/testng-5.10-jdk15.jar b/src/main/weapp/WEB-INF/classes/lib/testng-5.10-jdk15.jar
similarity index 100%
rename from src/main/website/WEB-INF/classes/lib/testng-5.10-jdk15.jar
rename to src/main/weapp/WEB-INF/classes/lib/testng-5.10-jdk15.jar

diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar
rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-javadoc.jar

diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar
rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT-sources.jar

diff --git a/src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar b/src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar
rename to src/main/weapp/WEB-INF/lib/cassandra-driver-core-2.0.0-beta3-SNAPSHOT.jar

diff --git a/src/main/website/WEB-INF/lib/displaytag-1.2.jar b/src/main/weapp/WEB-INF/lib/displaytag-1.2.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/displaytag-1.2.jar
rename to src/main/weapp/WEB-INF/lib/displaytag-1.2.jar

diff --git a/src/main/website/WEB-INF/lib/guava-15.0.jar b/src/main/weapp/WEB-INF/lib/guava-15.0.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/guava-15.0.jar
rename to src/main/weapp/WEB-INF/lib/guava-15.0.jar

diff --git a/src/main/website/WEB-INF/lib/jabaws-core-2.1.0.jar b/src/main/weapp/WEB-INF/lib/jabaws-core-2.1.0.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/jabaws-core-2.1.0.jar
rename to src/main/weapp/WEB-INF/lib/jabaws-core-2.1.0.jar

diff --git a/src/main/website/WEB-INF/lib/jabaws-core-src-2.1.0.jar b/src/main/weapp/WEB-INF/lib/jabaws-core-src-2.1.0.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/jabaws-core-src-2.1.0.jar
rename to src/main/weapp/WEB-INF/lib/jabaws-core-src-2.1.0.jar

diff --git a/src/main/website/WEB-INF/lib/jackson-core-asl-1.9.13.jar b/src/main/weapp/WEB-INF/lib/jackson-core-asl-1.9.13.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/jackson-core-asl-1.9.13.jar
rename to src/main/weapp/WEB-INF/lib/jackson-core-asl-1.9.13.jar

diff --git a/src/main/website/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar b/src/main/weapp/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar
rename to src/main/weapp/WEB-INF/lib/jackson-mapper-asl-1.9.13.jar

diff --git a/src/main/website/WEB-INF/lib/jstl-1.2.jar b/src/main/weapp/WEB-INF/lib/jstl-1.2.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/jstl-1.2.jar
rename to src/main/weapp/WEB-INF/lib/jstl-1.2.jar

diff --git a/src/main/website/WEB-INF/lib/log4j-1.2.16.jar b/src/main/weapp/WEB-INF/lib/log4j-1.2.16.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/log4j-1.2.16.jar
rename to src/main/weapp/WEB-INF/lib/log4j-1.2.16.jar

diff --git a/src/main/website/WEB-INF/lib/lz4-1.2.0.jar b/src/main/weapp/WEB-INF/lib/lz4-1.2.0.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/lz4-1.2.0.jar
rename to src/main/weapp/WEB-INF/lib/lz4-1.2.0.jar

diff --git a/src/main/website/WEB-INF/lib/metrics-core-3.0.1.jar b/src/main/weapp/WEB-INF/lib/metrics-core-3.0.1.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/metrics-core-3.0.1.jar
rename to src/main/weapp/WEB-INF/lib/metrics-core-3.0.1.jar

diff --git a/src/main/website/WEB-INF/lib/netty-3.6.6.Final.jar b/src/main/weapp/WEB-INF/lib/netty-3.6.6.Final.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/netty-3.6.6.Final.jar
rename to src/main/weapp/WEB-INF/lib/netty-3.6.6.Final.jar

diff --git a/src/main/website/WEB-INF/lib/slf4j-api-1.7.5.jar b/src/main/weapp/WEB-INF/lib/slf4j-api-1.7.5.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/slf4j-api-1.7.5.jar
rename to src/main/weapp/WEB-INF/lib/slf4j-api-1.7.5.jar

diff --git a/src/main/website/WEB-INF/lib/slf4j-simple-1.7.5.jar b/src/main/weapp/WEB-INF/lib/slf4j-simple-1.7.5.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/slf4j-simple-1.7.5.jar
rename to src/main/weapp/WEB-INF/lib/slf4j-simple-1.7.5.jar

diff --git a/src/main/website/WEB-INF/lib/snappy-java-1.1.0.jar b/src/main/weapp/WEB-INF/lib/snappy-java-1.1.0.jar
similarity index 100%
rename from src/main/website/WEB-INF/lib/snappy-java-1.1.0.jar
rename to src/main/weapp/WEB-INF/lib/snappy-java-1.1.0.jar

diff --git a/src/main/website/WEB-INF/web.xml b/src/main/weapp/WEB-INF/web.xml
similarity index 100%
rename from src/main/website/WEB-INF/web.xml
rename to src/main/weapp/WEB-INF/web.xml

diff --git a/src/main/website/conf/Engine.properties b/src/main/weapp/conf/Engine.properties
similarity index 100%
rename from src/main/website/conf/Engine.properties
rename to src/main/weapp/conf/Engine.properties

diff --git a/src/main/website/conf/GA.properties b/src/main/weapp/conf/GA.properties
similarity index 100%
rename from src/main/website/conf/GA.properties
rename to src/main/weapp/conf/GA.properties

diff --git a/src/main/website/conf/Proteocache.properties b/src/main/weapp/conf/Proteocache.properties
similarity index 100%
rename from src/main/website/conf/Proteocache.properties
rename to src/main/weapp/conf/Proteocache.properties