From: jprocter <Jim Procter>
Date: Sat, 29 Sep 2007 13:53:23 +0000 (+0000)
Subject: always update PDBEntry list if DBRefEntries might have changed
X-Git-Tag: Release_2_4~257
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=inline;h=a1704bd1ca00e4c24f91a1d0cd4f502c84d0a9f2;p=jalview.git

always update PDBEntry list if DBRefEntries might have changed
---

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index 6c35fa4..8f26680 100644
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -1224,6 +1224,7 @@ public class VamsasAppDatastore
               new jalview.io.vamsas.Dbref(this, dbref[db], vdseq, dsseq);
 
             }
+            dsseq.updatePDBIds();
           }
         }
 
diff --git a/src/jalview/ws/ASequenceFetcher.java b/src/jalview/ws/ASequenceFetcher.java
index c6e167b..1e1f6f8 100644
--- a/src/jalview/ws/ASequenceFetcher.java
+++ b/src/jalview/ws/ASequenceFetcher.java
@@ -167,7 +167,14 @@ public class ASequenceFetcher
     if (rseqs.size() > 0)
     {
       ret = new SequenceI[rseqs.size()];
-      rseqs.copyInto(ret);
+      Enumeration sqs = rseqs.elements();
+      int si=0;
+      while (sqs.hasMoreElements())
+      {
+        SequenceI s = (SequenceI) sqs.nextElement();
+        ret[si++] = s;
+        s.updatePDBIds();
+      }
     }
     return ret;
   }