From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 21 Nov 2016 13:24:10 +0000 (+0000)
Subject: JAL-2284 documentation for the new command-line option
X-Git-Tag: Release_2_10_1~10^2~8^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=inline;h=ac11d29a3ea51eb7ef40d73c2d953ca9567ec251;p=jalview.git

JAL-2284 documentation for the new command-line option
---

diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html
index 4b4aab9..e065494 100644
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -258,6 +258,14 @@
       <td><div align="left">Create Scalable Vector Graphics
           file FILE from alignment.</div></td>
     </tr>
+    <tr>
+      <td><div align="center">-biojsMSA FILE</div></td>
+      <td><div align="left">Write an HTML page to display
+          the alignment with the <a href="biojsmsa.html">
+          BioJS MSAviewer MSA</a>
+          </div>
+      </td>
+    </tr>
   </table>
 </body>
 </html>