From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 1 Apr 2016 10:51:02 +0000 (+0100)
Subject: JAL-1705 tweak to MapList.toString for debugging
X-Git-Tag: Release_2_10_0~270^2~1^2~5
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=inline;h=d6eb02943c3388257841b208e1fb65bd4c0be3b7;p=jalview.git

JAL-1705 tweak to MapList.toString for debugging
---

diff --git a/src/jalview/util/MapList.java b/src/jalview/util/MapList.java
index 8a014c6..e51442c 100644
--- a/src/jalview/util/MapList.java
+++ b/src/jalview/util/MapList.java
@@ -972,7 +972,9 @@ public class MapList
     {
       sb.append(" ").append(Arrays.toString(shift));
     }
-    sb.append(" ] To [");
+    sb.append(" ] ");
+    sb.append(fromRatio).append(":").append(toRatio);
+    sb.append(" to [");
     for (int[] shift : toShifts)
     {
       sb.append(" ").append(Arrays.toString(shift));
diff --git a/test/jalview/datamodel/MappingTest.java b/test/jalview/datamodel/MappingTest.java
index cbecad5..3131ad7 100644
--- a/test/jalview/datamodel/MappingTest.java
+++ b/test/jalview/datamodel/MappingTest.java
@@ -66,13 +66,13 @@ public class MappingTest
     MapList fk = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
             3, 1);
     Mapping m = new Mapping(fk);
-    assertEquals("[ [1, 6] [8, 13] ] To [ [4, 7] ] ", m.toString());
+    assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] ", m.toString());
 
     /*
      * with a sequence
      */
     SequenceI seq = new Sequence("Seq1", "");
     m = new Mapping(seq, fk);
-    assertEquals("[ [1, 6] [8, 13] ] To [ [4, 7] ] Seq1", m.toString());
+    assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] Seq1", m.toString());
   }
 }
diff --git a/test/jalview/util/MapListTest.java b/test/jalview/util/MapListTest.java
index e9bcf24..d4ed0ea 100644
--- a/test/jalview/util/MapListTest.java
+++ b/test/jalview/util/MapListTest.java
@@ -535,7 +535,7 @@ public class MapListTest
     MapList ml = new MapList(new int[] { 1, 5, 10, 15, 25, 20 }, new int[] {
         51, 1 }, 1, 3);
     String s = ml.toString();
-    assertEquals("[ [1, 5] [10, 15] [25, 20] ] To [ [51, 1] ]",
+    assertEquals("[ [1, 5] [10, 15] [25, 20] ] 1:3 to [ [51, 1] ]",
             s);
   }
 
@@ -559,7 +559,7 @@ public class MapListTest
 
     String s = ml.toString();
     assertEquals(
-            "[ [11, 15] [20, 25] [35, 30] [2, 4] [37, 40] ] To [ [72, 22] [12, 17] [78, 83] [88, 96] ]",
+            "[ [11, 15] [20, 25] [35, 30] [2, 4] [37, 40] ] 1:3 to [ [72, 22] [12, 17] [78, 83] [88, 96] ]",
             s);
   }
 
@@ -572,7 +572,7 @@ public class MapListTest
     MapList ml2 = new MapList(new int[] { 15, 16 }, new int[] { 58, 53 },
             1, 3);
     ml.addMapList(ml2);
-    assertEquals("[ [11, 16] ] To [ [72, 53] ]", ml.toString());
+    assertEquals("[ [11, 16] ] 1:3 to [ [72, 53] ]", ml.toString());
   }
 
   @Test(groups = "Functional")