From: hansonr <hansonr@STO24954W.ad.stolaf.edu>
Date: Tue, 6 Aug 2019 21:25:13 +0000 (-0500)
Subject: JAL-3383 JAL-3397 JAL-3253-applet IntervalStore options
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=0031ee4b6a42ad328e417cb65c7a840183e62e87;hp=0031ee4b6a42ad328e417cb65c7a840183e62e87;p=jalview.git

JAL-3383 JAL-3397 JAL-3253-applet IntervalStore options


In SequenceFeatures:

INTERVAL_STORE_NCLIST  (default for Java)
 - no changes from previous

 INTERVAL_STORE_NONCLIST (Java option)
 - uses intervalstore.nonc.IntervalStore
 - optional "lazy" just-in-time sorting
 - passes the following TestNG tests:

IntervalStoreJ.test.intervalstore.nonc...
NoNCListBuilderTest.java
NoNCListIntervalIteratorTest.java
NoNCListIntervalStoreTest.java
NoNCListIntervalTest.java
NoNCListLoadTest.java
NoNCListRandomisedTest.java
NoNCListTimingTests.java

test.jalview.datamodel.features...
FeatureStoreNoNCTest.java
FeatureStoreJSTest.java
SequenceFeaturesTest.java
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