From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 18 Sep 2016 11:43:51 +0000 (+0100)
Subject: JAL-1795 JAL-2206 prevent NPE when no data returned from Ensembl fetch
X-Git-Tag: Release_2_10_0~20^2~39
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=3e1026e9e2cf5e0be62113d34fc446e6dec5227b;p=jalview.git

JAL-1795 JAL-2206 prevent NPE when no data returned from Ensembl fetch
---

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 50e1032..0c20e12 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -118,7 +118,10 @@ public class EnsemblGene extends EnsemblSeqProxy
        * fetch the gene sequence(s) with features and xrefs
        */
       AlignmentI geneAlignment = super.getSequenceRecords(geneId);
-
+      if (geneAlignment == null)
+      {
+        continue;
+      }
       if (geneAlignment.getHeight() == 1)
       {
         getTranscripts(geneAlignment, geneId);